Protein ID | Ophun1|4742 |
Gene name | |
Location | Contig_444:5744..6238 |
Strand | + |
Gene length (bp) | 494 |
Transcript length (bp) | 333 |
Coding sequence length (bp) | 333 |
Protein length (aa) | 111 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00428 | Ribosomal_60s | 60s Acidic ribosomal protein | 6.1E-26 | 22 | 109 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P49148|RLA1_ALTAL | 60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1 | 3 | 110 | 9.0E-36 |
sp|P50344|RLA1_DAVTA | 60S acidic ribosomal protein P1 OS=Davidiella tassiana GN=CLAH12 PE=1 SV=1 | 3 | 110 | 3.0E-31 |
sp|Q9HGV0|RLA1_ASPFU | 60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G06830 PE=3 SV=1 | 3 | 110 | 2.0E-28 |
sp|P17476|RLA1_SCHPO | 60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp101 PE=3 SV=1 | 3 | 110 | 4.0E-25 |
sp|P17477|RLA3_SCHPO | 60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp102 PE=3 SV=1 | 3 | 110 | 5.0E-25 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P49148|RLA1_ALTAL | 60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1 | 3 | 110 | 9.0E-36 |
sp|P50344|RLA1_DAVTA | 60S acidic ribosomal protein P1 OS=Davidiella tassiana GN=CLAH12 PE=1 SV=1 | 3 | 110 | 3.0E-31 |
sp|Q9HGV0|RLA1_ASPFU | 60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G06830 PE=3 SV=1 | 3 | 110 | 2.0E-28 |
sp|P17476|RLA1_SCHPO | 60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp101 PE=3 SV=1 | 3 | 110 | 4.0E-25 |
sp|P17477|RLA3_SCHPO | 60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp102 PE=3 SV=1 | 3 | 110 | 5.0E-25 |
sp|Q9UU78|RLA5_SCHPO | 60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp103 PE=1 SV=1 | 3 | 110 | 8.0E-24 |
sp|P08570|RLA1_DROME | 60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2 | 1 | 110 | 2.0E-19 |
sp|O23095|RLA12_ARATH | 60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2 | 1 | 110 | 5.0E-17 |
sp|Q9HFQ7|RLA1_CANAL | 60S acidic ribosomal protein P1-A OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPP1A PE=3 SV=1 | 5 | 110 | 2.0E-16 |
sp|O01359|RLA1_OSCTI | 60S acidic ribosomal protein P1 OS=Oscheius tipulae GN=rpl-21 PE=3 SV=1 | 1 | 110 | 3.0E-16 |
sp|P05318|RLA1_YEAST | 60S acidic ribosomal protein P1-alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP1A PE=1 SV=4 | 5 | 110 | 1.0E-15 |
sp|Q8LCW9|RLA11_ARATH | 60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2 | 1 | 110 | 4.0E-15 |
sp|Q8LEQ0|RLA13_ARATH | 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2 | 1 | 110 | 5.0E-15 |
sp|P91913|RLA1_CAEEL | 60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=3 SV=2 | 1 | 110 | 2.0E-14 |
sp|P18660|RLA1_CHICK | 60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1 | 1 | 110 | 3.0E-13 |
sp|P10622|RLA3_YEAST | 60S acidic ribosomal protein P1-beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP1B PE=1 SV=3 | 10 | 110 | 5.0E-13 |
sp|P52855|RLA1_MAIZE | 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1 | 6 | 110 | 7.0E-13 |
sp|P05386|RLA1_HUMAN | 60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1 | 1 | 110 | 8.0E-13 |
sp|Q56K14|RLA1_BOVIN | 60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1 | 1 | 110 | 8.0E-13 |
sp|P19944|RLA1_RAT | 60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1 | 1 | 110 | 9.0E-12 |
sp|A1XQU7|RLA1_PIG | 60S acidic ribosomal protein P1 OS=Sus scrofa GN=RPLP1 PE=3 SV=1 | 1 | 110 | 1.0E-11 |
sp|P47955|RLA1_MOUSE | 60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1 | 1 | 110 | 1.0E-11 |
sp|Q9HFQ6|RLA3_CANAX | 60S acidic ribosomal protein P1-B OS=Candida albicans GN=RPP1B PE=1 SV=1 | 6 | 110 | 2.0E-11 |
sp|P29763|RLA1_CHLRE | 60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1 | 3 | 110 | 1.0E-10 |
sp|P02402|RLA1_ARTSA | 60S acidic ribosomal protein P1 OS=Artemia salina PE=1 SV=2 | 1 | 68 | 1.0E-10 |
sp|P22684|RLA1_DICDI | 60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1 | 6 | 110 | 6.0E-08 |
sp|P27464|RLA1_POLPE | 60S acidic ribosomal protein P1 OS=Polyorchis penicillatus PE=3 SV=1 | 2 | 110 | 5.0E-07 |
sp|O46313|RLA1_LEIPE | 60S acidic ribosomal protein P1 OS=Leishmania peruviana PE=3 SV=1 | 8 | 110 | 8.0E-06 |
Orthofinder run ID | 4 |
Orthogroup | 3833 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophun1|4742 MSSHAEQASSYAALILADEGAEITADKLQALIKAAKVEEVEPIWTSIFAKALSGKDVKELLVNVGSGGGAAPAAG GAAPAGGDAAAPAAEEKKEEEKDESDEDMGFGLFD* |
Coding | >Ophun1|4742 ATGTCTTCCCACGCTGAGCAAGCCTCGTCCTACGCGGCGCTGATTCTCGCCGATGAGGGCGCTGAGATTACCGCC GACAAGCTCCAGGCCCTGATCAAGGCTGCCAAGGTCGAGGAGGTCGAGCCCATCTGGACCAGCATCTTCGCCAAG GCGCTGTCTGGCAAGGACGTCAAGGAGCTGCTCGTCAACGTCGGCTCTGGAGGCGGTGCTGCCCCGGCTGCCGGA GGTGCTGCCCCTGCAGGCGGTGACGCTGCCGCTCCCGCCGCGGAAGAAAAGAAGGAAGAGGAGAAAGACGAGTCG GACGAGGACATGGGCTTCGGTCTGTTTGACTAA |
Transcript | >Ophun1|4742 ATGTCTTCCCACGCTGAGCAAGCCTCGTCCTACGCGGCGCTGATTCTCGCCGATGAGGGCGCTGAGATTACCGCC GACAAGCTCCAGGCCCTGATCAAGGCTGCCAAGGTCGAGGAGGTCGAGCCCATCTGGACCAGCATCTTCGCCAAG GCGCTGTCTGGCAAGGACGTCAAGGAGCTGCTCGTCAACGTCGGCTCTGGAGGCGGTGCTGCCCCGGCTGCCGGA GGTGCTGCCCCTGCAGGCGGTGACGCTGCCGCTCCCGCCGCGGAAGAAAAGAAGGAAGAGGAGAAAGACGAGTCG GACGAGGACATGGGCTTCGGTCTGTTTGACTAA |
Gene | >Ophun1|4742 ATGTCTTCCCACGCTGAGCAAGCCTCGTCCTACGCGGCGCTGATTCTCGCCGATGAGGGCGCTGAGATTACCGTT TGTCGCTCCCTATCGCGACGCATCGTCCGCTAACTTGTGCAGGCCGACAAGCTCCAGGCCCTGATCAAGGCTGCC AAGGTCGAGGAGGTCGAGCCCATCTGGACCAGCATCTTCGCCAAGGTACGATTGCTGTCGAGAACGAACGGAACG TCGACGAGACTCGAGGCGGCTGGCTGACTCTGGCGCAGGCGCTGTCTGGCAAGGACGTCAAGGAGCTGCTCGTCA ACGTCGGCTCTGGAGGCGGTGCTGCCCCGGCTGCCGGAGGTGCTGCCCCTGCAGGCGGTGACGCTGCCGCTCCCG CCGCGGAAGAAAAGAAGGAAGAGGGTGCGTTATGATCCCAGTCCAGGTCTTTTCCCGCTGACACTGCTGCAGAGA AAGACGAGTCGGACGAGGACATGGGCTTCGGTCTGTTTGACTAA |