Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|4742
Gene name
LocationContig_444:5744..6238
Strand+
Gene length (bp)494
Transcript length (bp)333
Coding sequence length (bp)333
Protein length (aa) 111

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00428 Ribosomal_60s 60s Acidic ribosomal protein 6.1E-26 22 109

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P49148|RLA1_ALTAL 60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1 3 110 9.0E-36
sp|P50344|RLA1_DAVTA 60S acidic ribosomal protein P1 OS=Davidiella tassiana GN=CLAH12 PE=1 SV=1 3 110 3.0E-31
sp|Q9HGV0|RLA1_ASPFU 60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G06830 PE=3 SV=1 3 110 2.0E-28
sp|P17476|RLA1_SCHPO 60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp101 PE=3 SV=1 3 110 4.0E-25
sp|P17477|RLA3_SCHPO 60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp102 PE=3 SV=1 3 110 5.0E-25
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P49148|RLA1_ALTAL 60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1 3 110 9.0E-36
sp|P50344|RLA1_DAVTA 60S acidic ribosomal protein P1 OS=Davidiella tassiana GN=CLAH12 PE=1 SV=1 3 110 3.0E-31
sp|Q9HGV0|RLA1_ASPFU 60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G06830 PE=3 SV=1 3 110 2.0E-28
sp|P17476|RLA1_SCHPO 60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp101 PE=3 SV=1 3 110 4.0E-25
sp|P17477|RLA3_SCHPO 60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp102 PE=3 SV=1 3 110 5.0E-25
sp|Q9UU78|RLA5_SCHPO 60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp103 PE=1 SV=1 3 110 8.0E-24
sp|P08570|RLA1_DROME 60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2 1 110 2.0E-19
sp|O23095|RLA12_ARATH 60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2 1 110 5.0E-17
sp|Q9HFQ7|RLA1_CANAL 60S acidic ribosomal protein P1-A OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPP1A PE=3 SV=1 5 110 2.0E-16
sp|O01359|RLA1_OSCTI 60S acidic ribosomal protein P1 OS=Oscheius tipulae GN=rpl-21 PE=3 SV=1 1 110 3.0E-16
sp|P05318|RLA1_YEAST 60S acidic ribosomal protein P1-alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP1A PE=1 SV=4 5 110 1.0E-15
sp|Q8LCW9|RLA11_ARATH 60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2 1 110 4.0E-15
sp|Q8LEQ0|RLA13_ARATH 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2 1 110 5.0E-15
sp|P91913|RLA1_CAEEL 60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=3 SV=2 1 110 2.0E-14
sp|P18660|RLA1_CHICK 60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1 1 110 3.0E-13
sp|P10622|RLA3_YEAST 60S acidic ribosomal protein P1-beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP1B PE=1 SV=3 10 110 5.0E-13
sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1 6 110 7.0E-13
sp|P05386|RLA1_HUMAN 60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1 1 110 8.0E-13
sp|Q56K14|RLA1_BOVIN 60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1 1 110 8.0E-13
sp|P19944|RLA1_RAT 60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1 1 110 9.0E-12
sp|A1XQU7|RLA1_PIG 60S acidic ribosomal protein P1 OS=Sus scrofa GN=RPLP1 PE=3 SV=1 1 110 1.0E-11
sp|P47955|RLA1_MOUSE 60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1 1 110 1.0E-11
sp|Q9HFQ6|RLA3_CANAX 60S acidic ribosomal protein P1-B OS=Candida albicans GN=RPP1B PE=1 SV=1 6 110 2.0E-11
sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1 3 110 1.0E-10
sp|P02402|RLA1_ARTSA 60S acidic ribosomal protein P1 OS=Artemia salina PE=1 SV=2 1 68 1.0E-10
sp|P22684|RLA1_DICDI 60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1 6 110 6.0E-08
sp|P27464|RLA1_POLPE 60S acidic ribosomal protein P1 OS=Polyorchis penicillatus PE=3 SV=1 2 110 5.0E-07
sp|O46313|RLA1_LEIPE 60S acidic ribosomal protein P1 OS=Leishmania peruviana PE=3 SV=1 8 110 8.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|4742
MSSHAEQASSYAALILADEGAEITADKLQALIKAAKVEEVEPIWTSIFAKALSGKDVKELLVNVGSGGGAAPAAG
GAAPAGGDAAAPAAEEKKEEEKDESDEDMGFGLFD*
Coding >Ophun1|4742
ATGTCTTCCCACGCTGAGCAAGCCTCGTCCTACGCGGCGCTGATTCTCGCCGATGAGGGCGCTGAGATTACCGCC
GACAAGCTCCAGGCCCTGATCAAGGCTGCCAAGGTCGAGGAGGTCGAGCCCATCTGGACCAGCATCTTCGCCAAG
GCGCTGTCTGGCAAGGACGTCAAGGAGCTGCTCGTCAACGTCGGCTCTGGAGGCGGTGCTGCCCCGGCTGCCGGA
GGTGCTGCCCCTGCAGGCGGTGACGCTGCCGCTCCCGCCGCGGAAGAAAAGAAGGAAGAGGAGAAAGACGAGTCG
GACGAGGACATGGGCTTCGGTCTGTTTGACTAA
Transcript >Ophun1|4742
ATGTCTTCCCACGCTGAGCAAGCCTCGTCCTACGCGGCGCTGATTCTCGCCGATGAGGGCGCTGAGATTACCGCC
GACAAGCTCCAGGCCCTGATCAAGGCTGCCAAGGTCGAGGAGGTCGAGCCCATCTGGACCAGCATCTTCGCCAAG
GCGCTGTCTGGCAAGGACGTCAAGGAGCTGCTCGTCAACGTCGGCTCTGGAGGCGGTGCTGCCCCGGCTGCCGGA
GGTGCTGCCCCTGCAGGCGGTGACGCTGCCGCTCCCGCCGCGGAAGAAAAGAAGGAAGAGGAGAAAGACGAGTCG
GACGAGGACATGGGCTTCGGTCTGTTTGACTAA
Gene >Ophun1|4742
ATGTCTTCCCACGCTGAGCAAGCCTCGTCCTACGCGGCGCTGATTCTCGCCGATGAGGGCGCTGAGATTACCGTT
TGTCGCTCCCTATCGCGACGCATCGTCCGCTAACTTGTGCAGGCCGACAAGCTCCAGGCCCTGATCAAGGCTGCC
AAGGTCGAGGAGGTCGAGCCCATCTGGACCAGCATCTTCGCCAAGGTACGATTGCTGTCGAGAACGAACGGAACG
TCGACGAGACTCGAGGCGGCTGGCTGACTCTGGCGCAGGCGCTGTCTGGCAAGGACGTCAAGGAGCTGCTCGTCA
ACGTCGGCTCTGGAGGCGGTGCTGCCCCGGCTGCCGGAGGTGCTGCCCCTGCAGGCGGTGACGCTGCCGCTCCCG
CCGCGGAAGAAAAGAAGGAAGAGGGTGCGTTATGATCCCAGTCCAGGTCTTTTCCCGCTGACACTGCTGCAGAGA
AAGACGAGTCGGACGAGGACATGGGCTTCGGTCTGTTTGACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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