Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|4675
Gene name
LocationContig_437:3321..4310
Strand-
Gene length (bp)989
Transcript length (bp)921
Coding sequence length (bp)921
Protein length (aa) 307

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04321 RmlD_sub_bind RmlD substrate binding domain 2.1E-11 21 277
PF01370 Epimerase NAD dependent epimerase/dehydratase family 4.5E-11 22 164
PF02719 Polysacc_synt_2 Polysaccharide biosynthesis protein 2.5E-04 51 117

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9LQ04|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1 21 281 1.0E-95
sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1 1 281 9.0E-86
sp|Q9LH76|RHM3_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1 51 281 1.0E-75
sp|Q9LPG6|RHM2_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1 51 281 2.0E-75
sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1 20 301 2.0E-69
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9LQ04|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1 21 281 1.0E-95
sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1 1 281 9.0E-86
sp|Q9LH76|RHM3_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1 51 281 1.0E-75
sp|Q9LPG6|RHM2_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1 51 281 2.0E-75
sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1 20 301 2.0E-69
sp|Q9FIE8|UXS3_ARATH UDP-glucuronic acid decarboxylase 3 OS=Arabidopsis thaliana GN=UXS3 PE=1 SV=1 20 250 9.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 41 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|4675
MDTPSSCSAPKKAPDTTVRRYLIWGGKGWIAGHLVELLRAKDEQVFTTTVRMEDQHAVLSELISMDPTHVINAAG
CTGRPNIDWCEENKHETLRSNAIGTLNLADCCAKAGVHCTVLATGCIFSYDDDHPIGGPGFTETDEPNFEGSFYS
HVKGLVEPMLIAYNCLILRLRMPVSDDLHPRSFLTKIMGYERVVNVPNSHSILHDLLPAVIAMAQHSETGVYNFV
NPGAISHNEVLDLFRDVVRPSLTYKNFSLEEQAKVLKAGRSNCKLDTTKLENKLREYEMEVPEIHEAYKRCFARM
KEAGIS*
Coding >Ophun1|4675
ATGGACACGCCCAGCAGCTGCAGTGCCCCCAAGAAAGCCCCGGATACCACCGTCCGCCGCTACCTCATCTGGGGC
GGCAAGGGCTGGATCGCCGGCCATCTTGTGGAGCTCCTCCGGGCAAAGGACGAACAGGTCTTCACTACCACGGTC
CGCATGGAGGACCAACATGCCGTCTTGTCGGAGCTCATCTCCATGGACCCTACGCACGTCATCAACGCCGCCGGC
TGCACCGGGAGACCCAACATCGACTGGTGCGAGGAGAACAAGCACGAGACACTGCGGTCCAACGCCATCGGCACT
TTGAACCTGGCTGACTGCTGCGCAAAAGCCGGCGTTCACTGCACCGTTCTCGCCACGGGCTGCATTTTTAGCTAC
GATGACGACCATCCCATCGGCGGCCCCGGCTTCACGGAAACCGACGAACCCAACTTTGAAGGGAGTTTCTATTCC
CACGTCAAGGGCCTTGTCGAGCCTATGCTCATAGCCTATAACTGCCTGATTCTTCGTCTTCGCATGCCGGTCAGC
GACGATCTTCATCCGCGCAGCTTTCTCACCAAGATCATGGGTTATGAGCGCGTTGTCAACGTGCCCAATAGCCAC
TCCATTCTCCACGATCTCTTGCCCGCCGTAATAGCCATGGCCCAGCACTCGGAGACGGGCGTGTACAACTTTGTC
AATCCCGGCGCCATCTCCCACAACGAGGTGCTTGACCTCTTCAGGGACGTTGTGCGGCCCAGCTTGACGTACAAG
AACTTTAGCCTGGAGGAACAGGCCAAGGTGCTCAAGGCAGGACGAAGCAACTGCAAGCTGGACACGACGAAGCTT
GAGAACAAGCTCAGGGAGTACGAGATGGAGGTGCCCGAGATACACGAGGCCTACAAGCGGTGCTTTGCACGGATG
AAGGAGGCCGGGATTTCCTGA
Transcript >Ophun1|4675
ATGGACACGCCCAGCAGCTGCAGTGCCCCCAAGAAAGCCCCGGATACCACCGTCCGCCGCTACCTCATCTGGGGC
GGCAAGGGCTGGATCGCCGGCCATCTTGTGGAGCTCCTCCGGGCAAAGGACGAACAGGTCTTCACTACCACGGTC
CGCATGGAGGACCAACATGCCGTCTTGTCGGAGCTCATCTCCATGGACCCTACGCACGTCATCAACGCCGCCGGC
TGCACCGGGAGACCCAACATCGACTGGTGCGAGGAGAACAAGCACGAGACACTGCGGTCCAACGCCATCGGCACT
TTGAACCTGGCTGACTGCTGCGCAAAAGCCGGCGTTCACTGCACCGTTCTCGCCACGGGCTGCATTTTTAGCTAC
GATGACGACCATCCCATCGGCGGCCCCGGCTTCACGGAAACCGACGAACCCAACTTTGAAGGGAGTTTCTATTCC
CACGTCAAGGGCCTTGTCGAGCCTATGCTCATAGCCTATAACTGCCTGATTCTTCGTCTTCGCATGCCGGTCAGC
GACGATCTTCATCCGCGCAGCTTTCTCACCAAGATCATGGGTTATGAGCGCGTTGTCAACGTGCCCAATAGCCAC
TCCATTCTCCACGATCTCTTGCCCGCCGTAATAGCCATGGCCCAGCACTCGGAGACGGGCGTGTACAACTTTGTC
AATCCCGGCGCCATCTCCCACAACGAGGTGCTTGACCTCTTCAGGGACGTTGTGCGGCCCAGCTTGACGTACAAG
AACTTTAGCCTGGAGGAACAGGCCAAGGTGCTCAAGGCAGGACGAAGCAACTGCAAGCTGGACACGACGAAGCTT
GAGAACAAGCTCAGGGAGTACGAGATGGAGGTGCCCGAGATACACGAGGCCTACAAGCGGTGCTTTGCACGGATG
AAGGAGGCCGGGATTTCCTGA
Gene >Ophun1|4675
ATGGACACGCCCAGCAGCTGCAGTGCCCCCAAGAAAGCCCCGGATACCACCGTCCGCCGCTACCTCATCTGGGGC
GGCAAGGGCTGGATCGCCGGCCATCTTGTGGAGCTCCTCCGGGCAAAGGACGAACAGGTCTTCACTACCACGGTC
CGCATGGAGGACCAACATGCCGTCTTGTCGGAGCTCATCTCCATGGACCCTACGCACGTCATCAACGCCGCCGGC
TGCACCGGGAGACCCAACATCGACTGGTGCGAGGAGAACAAGCACGAGACACTGCGGTCCAACGCCATCGGCACT
TTGAACCTGGCTGACTGCTGCGCAAAAGCCGGCGTTCACTGCACCGTTCTCGCCACGGGCTGCATTTTTAGCTAC
GATGACGACCATCCCATCGGCGGCCCCGGCTTCACGGAAACCGACGAACCCAACTTTGAAGGGAGTTTCTATTCC
CACGTCAAGGGCCTTGTCGAGCCTGTAAGTGCTCCATCCCGTACAGTCCTTGACGTCTGCGGCTGCTACAGCTCT
GGTTTGACTTTTCACAGATGCTCATAGCCTATAACTGCCTGATTCTTCGTCTTCGCATGCCGGTCAGCGACGATC
TTCATCCGCGCAGCTTTCTCACCAAGATCATGGGTTATGAGCGCGTTGTCAACGTGCCCAATAGCCACTCCATTC
TCCACGATCTCTTGCCCGCCGTAATAGCCATGGCCCAGCACTCGGAGACGGGCGTGTACAACTTTGTCAATCCCG
GCGCCATCTCCCACAACGAGGTGCTTGACCTCTTCAGGGACGTTGTGCGGCCCAGCTTGACGTACAAGAACTTTA
GCCTGGAGGAACAGGCCAAGGTGCTCAAGGCAGGACGAAGCAACTGCAAGCTGGACACGACGAAGCTTGAGAACA
AGCTCAGGGAGTACGAGATGGAGGTGCCCGAGATACACGAGGCCTACAAGCGGTGCTTTGCACGGATGAAGGAGG
CCGGGATTTCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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