© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4650 |
| Gene name | |
| Location | Contig_433:7113..8094 |
| Strand | - |
| Gene length (bp) | 981 |
| Transcript length (bp) | 981 |
| Coding sequence length (bp) | 981 |
| Protein length (aa) | 327 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12906 | RINGv | RING-variant domain | 2.5E-08 | 94 | 134 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0P496|MARH4_DANRE | E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2 SV=1 | 53 | 174 | 9.0E-08 |
| sp|Q9P2E8|MARH4_HUMAN | E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2 SV=2 | 58 | 171 | 3.0E-07 |
| sp|Q86YJ5|MARH9_HUMAN | E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1 SV=2 | 91 | 174 | 3.0E-07 |
| sp|Q3TZ87|MARH9_MOUSE | E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2 SV=1 | 91 | 174 | 4.0E-07 |
| sp|Q80TE3|MARH4_MOUSE | E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2 SV=3 | 91 | 171 | 5.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0P496|MARH4_DANRE | E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2 SV=1 | 53 | 174 | 9.0E-08 |
| sp|Q9P2E8|MARH4_HUMAN | E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2 SV=2 | 58 | 171 | 3.0E-07 |
| sp|Q86YJ5|MARH9_HUMAN | E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1 SV=2 | 91 | 174 | 3.0E-07 |
| sp|Q3TZ87|MARH9_MOUSE | E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2 SV=1 | 91 | 174 | 4.0E-07 |
| sp|Q80TE3|MARH4_MOUSE | E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2 SV=3 | 91 | 171 | 5.0E-07 |
| sp|A6P320|MARHB_RAT | E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11 PE=1 SV=1 | 92 | 173 | 8.0E-07 |
| sp|Q8CBH7|MARHB_MOUSE | E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2 SV=2 | 92 | 173 | 8.0E-07 |
| sp|A6NNE9|MARHB_HUMAN | E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2 SV=3 | 92 | 173 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046914 | transition metal ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 156 | 178 | 22 |
| 2 | 222 | 244 | 22 |
| 3 | 265 | 287 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4650 MNAQPTWDWDSLSGHPADEPAHRDTHQQPPEGEPVEEPKTSQANSRQRARYGPRTCRICLDSEEPKFPTETTSTL GISSASSRPSYVSDDPELGRLLSPCKCKGSQKYVHEGCLNSWRLANPMADRNYWQCPTCKFNYRLARLHWASMLS SKWAQVALTLVVVIVGLFILGFVADPILDLWFDPVGTISDTVTSVVSDVEAMKPRLSETSDSWTEHFVKGFFSLG FVGFLKSLVAMGPWQWMNLRTSGLLGSGRRRGGTGRARMDNFNLVFVLIGAFTFLMAIWRGVRTVSARVLNKVSD KVLDVGGDDPDEDVDDGTEAETKKDQ* |
| Coding | >Ophun1|4650 ATGAACGCTCAACCGACGTGGGACTGGGACTCTCTGTCCGGCCACCCGGCGGATGAGCCGGCCCATCGAGACACA CACCAACAACCGCCGGAAGGCGAGCCGGTCGAGGAGCCAAAGACTTCCCAAGCCAATTCAAGACAGCGCGCTCGC TACGGGCCCAGGACGTGTCGTATATGTCTGGACTCGGAGGAACCCAAGTTCCCGACCGAGACGACGTCGACTCTG GGCATCTCGTCGGCCTCATCTCGTCCCTCGTACGTGTCGGACGATCCCGAACTTGGCAGATTGCTATCGCCATGC AAATGTAAGGGATCGCAGAAATACGTGCACGAAGGCTGCCTCAACTCGTGGCGGTTGGCGAATCCCATGGCCGAT AGGAATTACTGGCAATGTCCAACTTGCAAATTCAACTACCGACTGGCGCGGCTGCACTGGGCCTCGATGCTGAGC AGCAAGTGGGCGCAGGTGGCGCTGACGCTCGTCGTCGTCATTGTCGGGCTCTTTATCCTCGGCTTCGTCGCAGAT CCCATACTGGACCTGTGGTTCGACCCAGTGGGCACCATCAGTGACACCGTCACCAGCGTCGTTTCCGACGTCGAG GCCATGAAGCCCCGGCTCTCCGAAACGTCCGACTCGTGGACGGAGCATTTCGTCAAGGGTTTCTTCTCCCTCGGT TTCGTCGGCTTCCTCAAGTCGCTGGTCGCCATGGGCCCCTGGCAGTGGATGAACCTCCGGACCAGTGGACTGCTG GGCTCCGGTCGTCGACGCGGCGGGACCGGTAGGGCAAGGATGGATAACTTTAATCTCGTCTTTGTTCTCATCGGT GCCTTTACCTTTCTCATGGCCATCTGGAGAGGCGTCCGGACGGTAAGCGCACGCGTCCTCAACAAAGTGAGCGAC AAGGTGCTCGACGTTGGCGGAGACGATCCCGACGAGGACGTTGACGACGGAACTGAAGCGGAGACTAAAAAGGAT CAATAA |
| Transcript | >Ophun1|4650 ATGAACGCTCAACCGACGTGGGACTGGGACTCTCTGTCCGGCCACCCGGCGGATGAGCCGGCCCATCGAGACACA CACCAACAACCGCCGGAAGGCGAGCCGGTCGAGGAGCCAAAGACTTCCCAAGCCAATTCAAGACAGCGCGCTCGC TACGGGCCCAGGACGTGTCGTATATGTCTGGACTCGGAGGAACCCAAGTTCCCGACCGAGACGACGTCGACTCTG GGCATCTCGTCGGCCTCATCTCGTCCCTCGTACGTGTCGGACGATCCCGAACTTGGCAGATTGCTATCGCCATGC AAATGTAAGGGATCGCAGAAATACGTGCACGAAGGCTGCCTCAACTCGTGGCGGTTGGCGAATCCCATGGCCGAT AGGAATTACTGGCAATGTCCAACTTGCAAATTCAACTACCGACTGGCGCGGCTGCACTGGGCCTCGATGCTGAGC AGCAAGTGGGCGCAGGTGGCGCTGACGCTCGTCGTCGTCATTGTCGGGCTCTTTATCCTCGGCTTCGTCGCAGAT CCCATACTGGACCTGTGGTTCGACCCAGTGGGCACCATCAGTGACACCGTCACCAGCGTCGTTTCCGACGTCGAG GCCATGAAGCCCCGGCTCTCCGAAACGTCCGACTCGTGGACGGAGCATTTCGTCAAGGGTTTCTTCTCCCTCGGT TTCGTCGGCTTCCTCAAGTCGCTGGTCGCCATGGGCCCCTGGCAGTGGATGAACCTCCGGACCAGTGGACTGCTG GGCTCCGGTCGTCGACGCGGCGGGACCGGTAGGGCAAGGATGGATAACTTTAATCTCGTCTTTGTTCTCATCGGT GCCTTTACCTTTCTCATGGCCATCTGGAGAGGCGTCCGGACGGTAAGCGCACGCGTCCTCAACAAAGTGAGCGAC AAGGTGCTCGACGTTGGCGGAGACGATCCCGACGAGGACGTTGACGACGGAACTGAAGCGGAGACTAAAAAGGAT CAATAA |
| Gene | >Ophun1|4650 ATGAACGCTCAACCGACGTGGGACTGGGACTCTCTGTCCGGCCACCCGGCGGATGAGCCGGCCCATCGAGACACA CACCAACAACCGCCGGAAGGCGAGCCGGTCGAGGAGCCAAAGACTTCCCAAGCCAATTCAAGACAGCGCGCTCGC TACGGGCCCAGGACGTGTCGTATATGTCTGGACTCGGAGGAACCCAAGTTCCCGACCGAGACGACGTCGACTCTG GGCATCTCGTCGGCCTCATCTCGTCCCTCGTACGTGTCGGACGATCCCGAACTTGGCAGATTGCTATCGCCATGC AAATGTAAGGGATCGCAGAAATACGTGCACGAAGGCTGCCTCAACTCGTGGCGGTTGGCGAATCCCATGGCCGAT AGGAATTACTGGCAATGTCCAACTTGCAAATTCAACTACCGACTGGCGCGGCTGCACTGGGCCTCGATGCTGAGC AGCAAGTGGGCGCAGGTGGCGCTGACGCTCGTCGTCGTCATTGTCGGGCTCTTTATCCTCGGCTTCGTCGCAGAT CCCATACTGGACCTGTGGTTCGACCCAGTGGGCACCATCAGTGACACCGTCACCAGCGTCGTTTCCGACGTCGAG GCCATGAAGCCCCGGCTCTCCGAAACGTCCGACTCGTGGACGGAGCATTTCGTCAAGGGTTTCTTCTCCCTCGGT TTCGTCGGCTTCCTCAAGTCGCTGGTCGCCATGGGCCCCTGGCAGTGGATGAACCTCCGGACCAGTGGACTGCTG GGCTCCGGTCGTCGACGCGGCGGGACCGGTAGGGCAAGGATGGATAACTTTAATCTCGTCTTTGTTCTCATCGGT GCCTTTACCTTTCTCATGGCCATCTGGAGAGGCGTCCGGACGGTAAGCGCACGCGTCCTCAACAAAGTGAGCGAC AAGGTGCTCGACGTTGGCGGAGACGATCCCGACGAGGACGTTGACGACGGAACTGAAGCGGAGACTAAAAAGGAT CAATAA |