© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4615 |
| Gene name | |
| Location | Contig_43:19835..20694 |
| Strand | + |
| Gene length (bp) | 859 |
| Transcript length (bp) | 633 |
| Coding sequence length (bp) | 633 |
| Protein length (aa) | 211 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00736 | EF1_GNE | EF-1 guanine nucleotide exchange domain | 1.0E-32 | 127 | 210 |
| PF10587 | EF-1_beta_acid | Eukaryotic elongation factor 1 beta central acidic region | 2.8E-14 | 88 | 115 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P30151|EF1B_XENLA | Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3 | 1 | 210 | 5.0E-65 |
| sp|O74173|EF1B_SCHPO | Elongation factor 1-beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef5 PE=2 SV=1 | 1 | 210 | 1.0E-62 |
| sp|P12262|EF1B_ARTSA | Elongation factor 1-beta OS=Artemia salina PE=1 SV=3 | 14 | 210 | 3.0E-59 |
| sp|Q6DET9|EF1B_XENTR | Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3 | 1 | 210 | 4.0E-59 |
| sp|P24534|EF1B_HUMAN | Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3 | 1 | 210 | 2.0E-56 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P30151|EF1B_XENLA | Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3 | 1 | 210 | 5.0E-65 |
| sp|O74173|EF1B_SCHPO | Elongation factor 1-beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef5 PE=2 SV=1 | 1 | 210 | 1.0E-62 |
| sp|P12262|EF1B_ARTSA | Elongation factor 1-beta OS=Artemia salina PE=1 SV=3 | 14 | 210 | 3.0E-59 |
| sp|Q6DET9|EF1B_XENTR | Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3 | 1 | 210 | 4.0E-59 |
| sp|P24534|EF1B_HUMAN | Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3 | 1 | 210 | 2.0E-56 |
| sp|Q9YGQ1|EF1B_CHICK | Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3 | 1 | 210 | 6.0E-56 |
| sp|P34826|EF1B_RABIT | Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2 | 1 | 210 | 2.0E-55 |
| sp|Q5E983|EF1B_BOVIN | Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3 | 1 | 210 | 5.0E-55 |
| sp|O70251|EF1B_MOUSE | Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5 | 1 | 210 | 2.0E-54 |
| sp|P32192|EF1D_ARTSA | Elongation factor 1-delta OS=Artemia salina PE=1 SV=2 | 75 | 210 | 7.0E-53 |
| sp|P29693|EF1D_XENLA | Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1 | 54 | 210 | 1.0E-52 |
| sp|Q4R3D4|EF1D_MACFA | Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2 | 72 | 210 | 2.0E-52 |
| sp|P29692|EF1D_HUMAN | Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5 | 72 | 210 | 3.0E-52 |
| sp|A5D989|EF1D_BOVIN | Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2 | 86 | 210 | 3.0E-50 |
| sp|Q68FR9|EF1D_RAT | Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2 | 72 | 210 | 5.0E-50 |
| sp|P53787|EF1D_RABIT | Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1 | 88 | 210 | 4.0E-49 |
| sp|P57776|EF1D_MOUSE | Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3 | 72 | 210 | 8.0E-49 |
| sp|Q9GRF8|EF1B_DICDI | Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1 | 14 | 210 | 3.0E-48 |
| sp|P34460|EF1B1_CAEEL | Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=eef-1B.1 PE=1 SV=1 | 17 | 210 | 2.0E-45 |
| sp|P29522|EF1B2_BOMMO | Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2 | 14 | 210 | 3.0E-45 |
| sp|P78590|EF1B_CANAW | Elongation factor 1-beta OS=Candida albicans (strain WO-1) GN=EFB1 PE=3 SV=1 | 1 | 210 | 3.0E-43 |
| sp|O96827|EF1B_DROME | Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3 | 14 | 210 | 4.0E-42 |
| sp|Q9VL18|EF1D_DROME | Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1 | 88 | 210 | 1.0E-41 |
| sp|Q717R8|EF1D_SHEEP | Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1 | 86 | 210 | 6.0E-41 |
| sp|P93447|EF1D_PIMBR | Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3 | 25 | 210 | 1.0E-38 |
| sp|P32471|EF1B_YEAST | Elongation factor 1-beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EFB1 PE=1 SV=4 | 14 | 210 | 1.0E-36 |
| sp|P29412|EF1B_PIG | Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE=1 SV=1 | 2 | 210 | 2.0E-33 |
| sp|Q9U2H9|EF1B2_CAEEL | Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=eef-1B.2 PE=1 SV=4 | 83 | 210 | 1.0E-32 |
| sp|Q40682|EF1D2_ORYSJ | Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3 | 14 | 210 | 2.0E-31 |
| sp|Q9SI20|EF1D2_ARATH | Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=1 SV=1 | 14 | 210 | 2.0E-30 |
| sp|P29545|EF1B_ORYSJ | Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3 | 14 | 210 | 7.0E-30 |
| sp|P48006|EF1D1_ARATH | Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=1 SV=2 | 14 | 210 | 3.0E-29 |
| sp|P34827|EF1B_TRYCR | 25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1 | 36 | 210 | 7.0E-28 |
| sp|Q84WM9|EF1B1_ARATH | Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2 | 14 | 210 | 9.0E-28 |
| sp|Q40680|EF1D1_ORYSJ | Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3 | 14 | 210 | 4.0E-27 |
| sp|Q9SCX3|EF1B2_ARATH | Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1 | 14 | 210 | 2.0E-25 |
| sp|O81918|EF1D_BETVU | Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3 | 122 | 210 | 1.0E-24 |
| sp|P29546|EF1B_WHEAT | Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2 | 6 | 210 | 2.0E-24 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006414 | translational elongation | Yes |
| GO:0003746 | translation elongation factor activity | Yes |
| GO:0090079 | translation regulator activity, nucleic acid binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0045182 | translation regulator activity | No |
| GO:0008135 | translation factor activity, RNA binding | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4615 MGFADFLSDAGLTNVACFKALKSTPDGEKYPHAARWYRHLATFEDEFGGLAGDASKPYTVYGPEVAAVTLNPAKA PAAAAEEDDDVDLFGSDDEEEDEEAARIREERLAEYRKKKEAKPKVAAKSVVTLDVKPWDDETDMAALESSVRSI QKDGLVWGASKLVTVGFGIRKLQINLVVEDDKISLDELQEEIQDFEDYVQSTDVVAMQKL* |
| Coding | >Ophun1|4615 ATGGGTTTCGCGGACTTTCTTTCTGATGCTGGGCTGACGAACGTCGCCTGCTTCAAAGCCCTCAAGTCGACGCCC GACGGGGAGAAGTACCCGCACGCGGCGCGCTGGTACCGCCACCTGGCCACCTTTGAGGACGAGTTTGGCGGGCTG GCGGGGGATGCCTCCAAGCCGTACACCGTGTACGGACCCGAGGTTGCGGCCGTGACGCTCAATCCTGCAAAGGCT CCTGCTGCGGCGGCGGAGGAGGATGATGATGTGGATTTGTTTGGGAGTGATGATGAGGAGGAGGATGAGGAGGCG GCGAGGATTCGGGAGGAGCGTTTGGCTGAGTATCGGAAGAAGAAGGAGGCTAAGCCCAAGGTTGCGGCCAAGTCT GTCGTCACTCTCGACGTCAAACCCTGGGACGACGAGACCGACATGGCCGCCCTGGAATCCTCCGTCCGCAGCATC CAAAAGGACGGTCTCGTATGGGGAGCCTCCAAGCTGGTAACGGTCGGCTTCGGCATCAGGAAGCTGCAGATCAAC CTGGTGGTCGAGGACGACAAGATTTCCCTGGATGAGCTGCAGGAGGAGATTCAGGACTTTGAGGATTACGTTCAG TCTACCGATGTTGTGGCCATGCAGAAGCTCTAA |
| Transcript | >Ophun1|4615 ATGGGTTTCGCGGACTTTCTTTCTGATGCTGGGCTGACGAACGTCGCCTGCTTCAAAGCCCTCAAGTCGACGCCC GACGGGGAGAAGTACCCGCACGCGGCGCGCTGGTACCGCCACCTGGCCACCTTTGAGGACGAGTTTGGCGGGCTG GCGGGGGATGCCTCCAAGCCGTACACCGTGTACGGACCCGAGGTTGCGGCCGTGACGCTCAATCCTGCAAAGGCT CCTGCTGCGGCGGCGGAGGAGGATGATGATGTGGATTTGTTTGGGAGTGATGATGAGGAGGAGGATGAGGAGGCG GCGAGGATTCGGGAGGAGCGTTTGGCTGAGTATCGGAAGAAGAAGGAGGCTAAGCCCAAGGTTGCGGCCAAGTCT GTCGTCACTCTCGACGTCAAACCCTGGGACGACGAGACCGACATGGCCGCCCTGGAATCCTCCGTCCGCAGCATC CAAAAGGACGGTCTCGTATGGGGAGCCTCCAAGCTGGTAACGGTCGGCTTCGGCATCAGGAAGCTGCAGATCAAC CTGGTGGTCGAGGACGACAAGATTTCCCTGGATGAGCTGCAGGAGGAGATTCAGGACTTTGAGGATTACGTTCAG TCTACCGATGTTGTGGCCATGCAGAAGCTCTAA |
| Gene | >Ophun1|4615 ATGGGTTTCGCGGACTTTCTTTCTGATGCTGGGCTGACGAGTGAGTCGTTCTCCCACTCCTCTTCCCCCCCGTTC CTCATAGATAATCCCCCCCCCCCCCCGAAACCGAAGCTGATGATGGAAAAAAAAAAAAAACAGTGCTCAACAACT GGCTCGTCACCCGCTCCTACATAGCAGGCCACTCCCCCTCGCAAGCAGACGTCGCCTGCTTCAAAGCCCTCAAGT CGACGCCCGACGGGGAGAAGTACCCGCACGCGGCGCGCTGGTACCGCCACCTGGCCACCTTTGAGGACGAGTTTG GCGGGCTGGCGGGGGATGCCTCCAAGCCGTACACCGTGTACGGACCCGAGGTTGCGGCCGTGACGCTCAATCCTG CAAAGGCTCCTGCTGCGGCGGCGGAGGAGGATGATGATGTGGATTTGTTTGGGAGTGATGATGAGGAGGAGGATG AGGAGGCGGCGAGGATTCGGGAGGAGCGTTTGGCTGAGTATCGGAAGAAGAAGGAGGCTAAGCCCAAGGTTGCGG CCAAGTCTGTCGTCACTCTCGACGTCAAACCCTGGGGTAAAACCATCCCCCCAAGCCTCTTACGTCCCCAACACA ACCGCTAACGAAGAGAAAAAAACCCCCAGACGACGAGACCGACATGGCCGCCCTGGAATCCTCCGTCCGCAGCAT CCAAAAGGACGGTCTCGTATGGGGAGCCTCCAAGCTGGTAACGGTCGGCTTCGGCATCAGGAAGCTGCAGATCAA CCTGGTGGTCGAGGACGACAAGATTTCCCTGGATGAGCTGCAGGAGGAGATTCAGGACTTTGAGGATTACGTTCA GTCTACCGATGTTGTGGCCATGCAGAAGCTCTAA |