Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|4614
Gene name
LocationContig_43:18013..19383
Strand+
Gene length (bp)1370
Transcript length (bp)1317
Coding sequence length (bp)1317
Protein length (aa) 439

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain 9.5E-81 67 297
PF00278 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain 6.0E-26 113 404

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P27121|DCOR_NEUCR Ornithine decarboxylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-1 PE=2 SV=1 1 436 0.0E+00
sp|Q9UQW9|DCOR_SCHPO Ornithine decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spe1 PE=2 SV=1 33 426 2.0E-142
sp|P08432|DCOR_YEAST Ornithine decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPE1 PE=1 SV=1 31 429 4.0E-137
sp|P00860|DCOR_MOUSE Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=2 58 438 2.0E-124
sp|P27119|DCOR_MUSPA Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1 58 435 3.0E-124
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Swissprot ID Swissprot Description Start End E-value
sp|P27121|DCOR_NEUCR Ornithine decarboxylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-1 PE=2 SV=1 1 436 0.0E+00
sp|Q9UQW9|DCOR_SCHPO Ornithine decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spe1 PE=2 SV=1 33 426 2.0E-142
sp|P08432|DCOR_YEAST Ornithine decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPE1 PE=1 SV=1 31 429 4.0E-137
sp|P00860|DCOR_MOUSE Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=2 58 438 2.0E-124
sp|P27119|DCOR_MUSPA Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1 58 435 3.0E-124
sp|P09057|DCOR_RAT Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1 58 438 1.0E-122
sp|P27118|DCOR_CHICK Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1 58 438 4.0E-122
sp|P11926|DCOR_HUMAN Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2 58 438 4.0E-122
sp|P78599|DCOR_CANAL Ornithine decarboxylase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPE1 PE=3 SV=1 34 428 1.0E-121
sp|Q9I8S4|AZIN2_XENLA Antizyme inhibitor 2 OS=Xenopus laevis GN=azin2 PE=2 SV=1 58 420 4.0E-121
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc1-a PE=2 SV=1 58 435 1.0E-120
sp|P27117|DCOR_BOVIN Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1 58 438 1.0E-120
sp|P07805|DCOR_TRYBB Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2 48 428 1.0E-117
sp|P14019|DCOR_CRIGR Ornithine decarboxylase OS=Cricetulus griseus GN=ODC1 PE=2 SV=3 42 438 3.0E-113
sp|P41931|DCOR_CAEEL Ornithine decarboxylase OS=Caenorhabditis elegans GN=odc-1 PE=3 SV=2 58 429 2.0E-106
sp|Q54UF3|DCOR_DICDI Probable ornithine decarboxylase OS=Dictyostelium discoideum GN=odc PE=3 SV=1 58 417 5.0E-101
sp|Q96A70|AZIN2_HUMAN Antizyme inhibitor 2 OS=Homo sapiens GN=AZIN2 PE=1 SV=1 62 438 9.0E-98
sp|Q8BVM4|AZIN2_MOUSE Antizyme inhibitor 2 OS=Mus musculus GN=Azin2 PE=1 SV=1 57 438 1.0E-97
sp|P40807|DCOR1_DROME Ornithine decarboxylase 1 OS=Drosophila melanogaster GN=Odc1 PE=2 SV=3 64 418 1.0E-95
sp|P49725|DCOR_PANRE Ornithine decarboxylase OS=Panagrellus redivivus GN=ODC PE=2 SV=1 57 417 4.0E-95
sp|Q5R7K3|AZIN1_PONAB Antizyme inhibitor 1 OS=Pongo abelii GN=AZIN1 PE=2 SV=1 59 418 5.0E-90
sp|O14977|AZIN1_HUMAN Antizyme inhibitor 1 OS=Homo sapiens GN=AZIN1 PE=1 SV=2 59 418 1.0E-89
sp|O35484|AZIN1_MOUSE Antizyme inhibitor 1 OS=Mus musculus GN=Azin1 PE=1 SV=1 59 418 4.0E-87
sp|Q63764|AZIN1_RAT Antizyme inhibitor 1 OS=Rattus norvegicus GN=Azin1 PE=1 SV=1 59 405 3.0E-85
sp|P27116|DCOR_LEIDO Ornithine decarboxylase OS=Leishmania donovani PE=3 SV=1 59 417 1.0E-84
sp|P50134|DCOR_DATST Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1 58 426 7.0E-84
sp|Q8S3N2|DCOR_CAPAN Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1 27 426 7.0E-84
sp|P40808|DCOR2_DROME Ornithine decarboxylase 2 OS=Drosophila melanogaster GN=Odc2 PE=3 SV=2 64 417 8.0E-84
sp|O22616|DCOR_SOLLC Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2 58 426 2.0E-83
sp|O50657|DCLO_SELRU Lysine/ornithine decarboxylase OS=Selenomonas ruminantium GN=ldc PE=1 SV=1 62 425 5.0E-64
sp|D4A693|AZIN2_RAT Antizyme inhibitor 2 OS=Rattus norvegicus GN=Azin2 PE=1 SV=2 57 438 7.0E-64
sp|Q92445|DCOR_PARBR Ornithine decarboxylase (Fragment) OS=Paracoccidioides brasiliensis GN=ODC PE=3 SV=1 215 293 1.0E-21
sp|P19572|DCDA_PSEAE Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lysA PE=3 SV=2 88 424 1.0E-20
sp|O05321|DCDA_PSEFL Diaminopimelate decarboxylase OS=Pseudomonas fluorescens GN=lysA PE=3 SV=1 88 415 1.0E-20
sp|Q9PII5|DCDA_CAMJE Diaminopimelate decarboxylase OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) GN=lysA PE=3 SV=1 62 310 4.0E-19
sp|Q9KVL7|DCDA_VIBCH Diaminopimelate decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=lysA PE=1 SV=1 88 415 9.0E-19
sp|Q9ZME5|DCDA_HELPJ Diaminopimelate decarboxylase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=lysA PE=3 SV=1 62 415 1.0E-18
sp|P56129|DCDA_HELPY Diaminopimelate decarboxylase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=lysA PE=3 SV=1 62 415 2.0E-18
sp|B4XMC6|DCDA_HELPX Diaminopimelate decarboxylase OS=Helicobacter pylori GN=lysA PE=1 SV=1 62 415 5.0E-18
sp|O27390|DCDA_METTH Diaminopimelate decarboxylase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=lysA PE=3 SV=1 72 415 2.0E-17
sp|P44316|DCDA_HAEIN Diaminopimelate decarboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=lysA PE=3 SV=1 88 415 7.0E-17
sp|Q9Z661|DCDA_ZYMMO Diaminopimelate decarboxylase OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=lysA PE=3 SV=1 88 415 6.0E-16
sp|Q9JXM2|DCDA_NEIMB Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B (strain MC58) GN=lysA PE=3 SV=1 88 424 9.0E-16
sp|Q9JWA6|DCDA_NEIMA Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=lysA PE=3 SV=1 88 424 3.0E-15
sp|O29458|DCDA_ARCFU Diaminopimelate decarboxylase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=lysA PE=3 SV=1 45 416 4.0E-15
sp|Q9RTK2|DCDA_DEIRA Diaminopimelate decarboxylase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=lysA PE=3 SV=1 87 406 2.0E-14
sp|O67262|DCDA_AQUAE Diaminopimelate decarboxylase OS=Aquifex aeolicus (strain VF5) GN=lysA PE=1 SV=1 62 424 8.0E-14
sp|Q9ZBH5|DCDA_STRCO Diaminopimelate decarboxylase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=lysA PE=3 SV=1 88 415 6.0E-13
sp|Q9HK20|DCDA_THEAC Diaminopimelate decarboxylase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=lysA PE=3 SV=2 83 416 1.0E-11
sp|Q58497|DCDA_METJA Diaminopimelate decarboxylase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=lysA PE=1 SV=1 88 415 3.0E-10
sp|Q8A800|DCDA_BACTN Diaminopimelate decarboxylase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=lysA PE=3 SV=1 82 415 1.0E-09
sp|P31851|TABA_PSEAJ Protein TabA OS=Pseudomonas amygdali pv. tabaci GN=tabA PE=3 SV=1 85 416 2.0E-09
sp|Q9X1K5|DCDA_THEMA Diaminopimelate decarboxylase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=lysA PE=1 SV=1 86 415 2.0E-09
sp|Q2L4H3|BTRK_BACCI L-glutamyl-[BtrI acyl-carrier protein] decarboxylase OS=Bacillus circulans GN=btrK PE=1 SV=2 59 325 3.0E-09
sp|Q5HG20|DCDA_STAAC Diaminopimelate decarboxylase OS=Staphylococcus aureus (strain COL) GN=lysA PE=3 SV=1 72 419 9.0E-09
sp|Q8K9C4|DCDA_BUCAP Diaminopimelate decarboxylase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=lysA PE=3 SV=1 70 415 1.0E-08
sp|O69203|DCDA_ACTPA Diaminopimelate decarboxylase OS=Actinosynnema pretiosum subsp. auranticum GN=lysA PE=3 SV=1 64 415 4.0E-08
sp|Q2A5D5|DCDA_FRATH Diaminopimelate decarboxylase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=lysA PE=3 SV=1 79 415 9.0E-08
sp|Q9KCM5|DCDA_BACHD Diaminopimelate decarboxylase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=lysA PE=3 SV=1 98 319 2.0E-07
sp|P55709|Y4YA_RHISN Uncharacterized protein y4yA OS=Rhizobium sp. (strain NGR234) GN=NGR_a00720 PE=4 SV=1 87 260 4.0E-06
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GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|4614
MVMATAVVETAVNHVPSTLVKSPLVTVPRDHDAAKQLIGEALHRRVASIDHDSCAPGDEDTFYVADLGDVYRQHL
CWKKHLPRVKPFFAVKCNPDPHVLRLLAALGTGFDCASKTEIEQVLGLGVAADRIIYAQPCKTTSYLRFVRSAGV
RQMTFDNSDELYKVAKVFPEAELFLRIATDDRSSLCRLSMKFGADMDTTADLLTLARDLGLKVVGVSFHVGSGAS
DPQAFYKAVRDAHTVFQQGRALGFSMRTLDVGGGFCGDTFPVMAGALADALDDFFPGSDVDVMAEPGRYYVSSAF
TLACNVIARRTVDNGKGYMVYINDGVYGNFSSIMFDHQQPIPRILRTAGRTVYDTATSGPLRAGMGIEYSVWGPT
CDGIDRISESVRFNSVLDVGDWLYFEDMGAYTRCSATQFNGFRNAHDVVYVCSEPGAQALLEQ*
Coding >Ophun1|4614
ATGGTTATGGCAACGGCTGTTGTTGAGACAGCTGTCAATCATGTTCCATCGACTCTTGTCAAAAGCCCGCTAGTC
ACTGTCCCACGGGATCACGATGCCGCCAAGCAGCTGATTGGCGAGGCCCTGCATCGCCGCGTGGCCTCGATCGAT
CATGACTCGTGCGCGCCCGGTGACGAGGACACCTTCTATGTGGCCGACCTGGGCGACGTCTACAGGCAGCATCTC
TGCTGGAAGAAGCATCTGCCTCGGGTCAAGCCCTTCTTTGCCGTCAAATGCAATCCGGATCCGCACGTGCTCCGG
CTTCTGGCCGCGCTCGGCACCGGCTTCGACTGCGCGTCCAAGACGGAGATTGAGCAGGTCTTGGGCCTCGGCGTG
GCGGCGGACCGCATCATCTACGCGCAGCCGTGCAAGACGACGTCGTACCTACGCTTCGTCCGCTCGGCCGGCGTC
CGGCAGATGACCTTTGACAATAGCGACGAGCTCTACAAGGTGGCCAAGGTCTTTCCCGAGGCCGAGCTGTTCCTG
CGCATCGCGACCGACGACAGATCCAGCCTGTGCCGTCTTAGCATGAAGTTTGGGGCCGACATGGACACGACGGCC
GACCTCCTGACTCTGGCCCGCGACCTGGGCCTCAAGGTAGTCGGCGTCAGCTTCCACGTTGGATCCGGGGCATCG
GACCCGCAGGCATTCTACAAGGCCGTTCGCGACGCCCACACCGTCTTCCAGCAGGGACGGGCGCTGGGCTTCAGC
ATGCGCACCCTAGACGTCGGCGGCGGCTTCTGCGGCGACACGTTCCCCGTCATGGCCGGCGCTCTGGCCGACGCT
CTCGACGACTTCTTTCCCGGCAGCGACGTCGACGTCATGGCCGAGCCCGGGCGTTACTACGTATCGTCGGCCTTT
ACGTTGGCCTGCAACGTCATCGCGCGCCGAACCGTTGACAACGGCAAGGGCTACATGGTCTACATCAACGACGGC
GTCTACGGCAACTTCTCCAGCATCATGTTCGATCACCAGCAGCCGATCCCGCGTATCCTTCGTACGGCGGGCCGC
ACCGTCTACGACACGGCGACGTCGGGTCCGCTCCGAGCCGGCATGGGCATCGAGTACTCGGTATGGGGCCCAACG
TGCGACGGCATCGACCGCATCAGCGAGAGCGTTCGCTTCAACTCTGTTCTCGATGTCGGCGACTGGCTCTACTTT
GAGGACATGGGTGCTTATACGCGCTGCTCGGCCACGCAGTTTAATGGTTTCCGTAACGCTCATGATGTTGTTTAC
GTCTGTAGCGAGCCGGGGGCGCAGGCGTTGTTGGAGCAGTGA
Transcript >Ophun1|4614
ATGGTTATGGCAACGGCTGTTGTTGAGACAGCTGTCAATCATGTTCCATCGACTCTTGTCAAAAGCCCGCTAGTC
ACTGTCCCACGGGATCACGATGCCGCCAAGCAGCTGATTGGCGAGGCCCTGCATCGCCGCGTGGCCTCGATCGAT
CATGACTCGTGCGCGCCCGGTGACGAGGACACCTTCTATGTGGCCGACCTGGGCGACGTCTACAGGCAGCATCTC
TGCTGGAAGAAGCATCTGCCTCGGGTCAAGCCCTTCTTTGCCGTCAAATGCAATCCGGATCCGCACGTGCTCCGG
CTTCTGGCCGCGCTCGGCACCGGCTTCGACTGCGCGTCCAAGACGGAGATTGAGCAGGTCTTGGGCCTCGGCGTG
GCGGCGGACCGCATCATCTACGCGCAGCCGTGCAAGACGACGTCGTACCTACGCTTCGTCCGCTCGGCCGGCGTC
CGGCAGATGACCTTTGACAATAGCGACGAGCTCTACAAGGTGGCCAAGGTCTTTCCCGAGGCCGAGCTGTTCCTG
CGCATCGCGACCGACGACAGATCCAGCCTGTGCCGTCTTAGCATGAAGTTTGGGGCCGACATGGACACGACGGCC
GACCTCCTGACTCTGGCCCGCGACCTGGGCCTCAAGGTAGTCGGCGTCAGCTTCCACGTTGGATCCGGGGCATCG
GACCCGCAGGCATTCTACAAGGCCGTTCGCGACGCCCACACCGTCTTCCAGCAGGGACGGGCGCTGGGCTTCAGC
ATGCGCACCCTAGACGTCGGCGGCGGCTTCTGCGGCGACACGTTCCCCGTCATGGCCGGCGCTCTGGCCGACGCT
CTCGACGACTTCTTTCCCGGCAGCGACGTCGACGTCATGGCCGAGCCCGGGCGTTACTACGTATCGTCGGCCTTT
ACGTTGGCCTGCAACGTCATCGCGCGCCGAACCGTTGACAACGGCAAGGGCTACATGGTCTACATCAACGACGGC
GTCTACGGCAACTTCTCCAGCATCATGTTCGATCACCAGCAGCCGATCCCGCGTATCCTTCGTACGGCGGGCCGC
ACCGTCTACGACACGGCGACGTCGGGTCCGCTCCGAGCCGGCATGGGCATCGAGTACTCGGTATGGGGCCCAACG
TGCGACGGCATCGACCGCATCAGCGAGAGCGTTCGCTTCAACTCTGTTCTCGATGTCGGCGACTGGCTCTACTTT
GAGGACATGGGTGCTTATACGCGCTGCTCGGCCACGCAGTTTAATGGTTTCCGTAACGCTCATGATGTTGTTTAC
GTCTGTAGCGAGCCGGGGGCGCAGGCGTTGTTGGAGCAGTGA
Gene >Ophun1|4614
ATGGTTATGGCAACGGCTGTTGTTGAGACAGCTGTCAATCATGTTCCATCGACTCTTGTCAAAAGCCCGCTAGTC
ACTGTCCCACGGGATCACGATGCCGCCAAGCAGCTGATTGGCGAGGCCCTGCATCGCCGCGTGGCCTCGATCGAT
CATGACTCGTGCGCGCCCGGTGACGAGGACACCTTCTATGTGGCCGACCTGGGCGACGTCTACAGGCAGCATCTC
TGCTGGAAGAAGCATCTGCCTCGGGTCAAGCCCTTCTTTGGTGAGTCTGACGTCGTCTATTTGCTGGGCATGACT
CTGACTCGAGAGCGTCAGCCGTCAAATGCAATCCGGATCCGCACGTGCTCCGGCTTCTGGCCGCGCTCGGCACCG
GCTTCGACTGCGCGTCCAAGACGGAGATTGAGCAGGTCTTGGGCCTCGGCGTGGCGGCGGACCGCATCATCTACG
CGCAGCCGTGCAAGACGACGTCGTACCTACGCTTCGTCCGCTCGGCCGGCGTCCGGCAGATGACCTTTGACAATA
GCGACGAGCTCTACAAGGTGGCCAAGGTCTTTCCCGAGGCCGAGCTGTTCCTGCGCATCGCGACCGACGACAGAT
CCAGCCTGTGCCGTCTTAGCATGAAGTTTGGGGCCGACATGGACACGACGGCCGACCTCCTGACTCTGGCCCGCG
ACCTGGGCCTCAAGGTAGTCGGCGTCAGCTTCCACGTTGGATCCGGGGCATCGGACCCGCAGGCATTCTACAAGG
CCGTTCGCGACGCCCACACCGTCTTCCAGCAGGGACGGGCGCTGGGCTTCAGCATGCGCACCCTAGACGTCGGCG
GCGGCTTCTGCGGCGACACGTTCCCCGTCATGGCCGGCGCTCTGGCCGACGCTCTCGACGACTTCTTTCCCGGCA
GCGACGTCGACGTCATGGCCGAGCCCGGGCGTTACTACGTATCGTCGGCCTTTACGTTGGCCTGCAACGTCATCG
CGCGCCGAACCGTTGACAACGGCAAGGGCTACATGGTCTACATCAACGACGGCGTCTACGGCAACTTCTCCAGCA
TCATGTTCGATCACCAGCAGCCGATCCCGCGTATCCTTCGTACGGCGGGCCGCACCGTCTACGACACGGCGACGT
CGGGTCCGCTCCGAGCCGGCATGGGCATCGAGTACTCGGTATGGGGCCCAACGTGCGACGGCATCGACCGCATCA
GCGAGAGCGTTCGCTTCAACTCTGTTCTCGATGTCGGCGACTGGCTCTACTTTGAGGACATGGGTGCTTATACGC
GCTGCTCGGCCACGCAGTTTAATGGTTTCCGTAACGCTCATGATGTTGTTTACGTCTGTAGCGAGCCGGGGGCGC
AGGCGTTGTTGGAGCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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