© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4568 |
| Gene name | |
| Location | Contig_424:2209..4171 |
| Strand | - |
| Gene length (bp) | 1962 |
| Transcript length (bp) | 1767 |
| Coding sequence length (bp) | 1767 |
| Protein length (aa) | 589 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03467 | Smg4_UPF3 | Smg-4/UPF3 family | 5.1E-47 | 59 | 229 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.9E-06 | 479 | 522 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FVW4|RENT3_ARATH | Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1 | 55 | 229 | 2.0E-14 |
| sp|O94260|G3BP_SCHPO | Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 | 431 | 564 | 2.0E-08 |
| sp|Q10267|UPF3_SCHPO | Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=upf3 PE=3 SV=1 | 52 | 228 | 3.0E-08 |
| sp|Q9H1J1|REN3A_HUMAN | Regulator of nonsense transcripts 3A OS=Homo sapiens GN=UPF3A PE=1 SV=1 | 62 | 233 | 2.0E-07 |
| sp|B0S733|REN3A_DANRE | Regulator of nonsense transcripts 3A OS=Danio rerio GN=upf3a PE=2 SV=2 | 62 | 231 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003676 | nucleic acid binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4568 MSASPALSRRTDGPLPPDKGKSSHHVHPQRPSRGAEKASDSVKSSGEPSKRTKSRSPSQGEKLIIRRLPPGMTEA EFVAILGSDWEVNKGKVDWFSFCPGKVSVDPSKQSRPGRAYLHLTRKDDMMALSQVVRAATWEDAKLTFTSPALV GPPSLEFATYKKIPSTRRRGDPRQGTIDQDPEFMAFLEGLANPVPYKESVDVEDADDGNKDDGKITTTPLIEYLR EKKANKGKETAKNAKGKAAAREDDKKKTRDAKGDKSVKTAAKEPVKILMKKAAAEPAPEVVASPVPPVSAVADAP KGRRAGIAAAARILQRDLGLSPGSAHRRARHDAAKAEAASSKEAVGEAAPPPSTTEAASSKITVATKQPQAPGRR VRSGKAAERGKAAEGQQTTATTPVTATVSNPPVMLRKRGDEEVPLATTTIRPATSKPAANGKATGPSASNTNKGG KATGGQQKKAPTVTAGATRAFVKHANASQGVTEASLRQALEAFGAVTQVEVDKRKGFAYVDFADHDGLVKAMGAG TVQVAQSAVQVVERRDKKPATGGGPEKGAGRGRRGRGGGGGGGGAKANGTAPAAVAATTGGSG* |
| Coding | >Ophun1|4568 ATGTCCGCGTCACCGGCGCTGTCCCGTAGGACCGATGGTCCGCTCCCTCCGGACAAGGGAAAGTCGTCTCACCAT GTCCATCCGCAGCGACCGTCTCGTGGGGCGGAAAAGGCTTCGGATTCTGTCAAGAGCTCCGGTGAGCCGTCGAAA CGAACAAAGTCTAGATCTCCCAGTCAGGGAGAAAAACTCATCATCCGCCGCCTGCCCCCGGGCATGACCGAGGCC GAATTCGTCGCTATTCTCGGCTCCGACTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTTTTGCCCCGGA AAAGTCTCTGTCGATCCTTCGAAGCAGTCTCGCCCGGGCAGGGCCTATCTTCATCTCACGCGAAAAGACGACATG ATGGCTCTCAGCCAGGTCGTGCGCGCCGCCACGTGGGAAGACGCCAAGTTGACGTTTACGAGCCCCGCGCTCGTT GGCCCGCCAAGCCTCGAGTTTGCGACGTACAAGAAGATACCCAGCACCCGCCGGCGAGGCGACCCTCGTCAGGGC ACCATCGATCAAGACCCCGAGTTCATGGCTTTCCTCGAAGGCCTCGCAAACCCGGTCCCTTACAAGGAGAGCGTT GATGTTGAAGACGCCGACGACGGAAACAAGGATGACGGCAAGATAACAACGACGCCGCTCATCGAGTATCTCCGT GAGAAAAAGGCCAACAAGGGCAAGGAGACTGCCAAAAACGCCAAGGGCAAGGCAGCTGCTAGAGAAGACGACAAG AAGAAGACGAGAGACGCAAAAGGCGACAAATCGGTCAAGACGGCAGCCAAAGAGCCCGTCAAGATTTTGATGAAG AAGGCCGCAGCTGAGCCAGCCCCCGAGGTGGTGGCCAGTCCAGTGCCGCCTGTCAGCGCCGTAGCCGACGCTCCC AAAGGTCGTCGCGCCGGCATAGCGGCCGCCGCGCGCATCCTGCAGCGCGACCTCGGCTTGAGCCCGGGCAGCGCC CACCGACGAGCAAGACACGACGCCGCCAAAGCAGAGGCAGCTTCGAGCAAGGAAGCTGTCGGAGAAGCTGCACCG CCACCGTCGACGACGGAAGCCGCCAGCAGCAAAATTACAGTCGCGACCAAGCAGCCGCAGGCGCCGGGCCGTAGG GTTCGCAGCGGCAAGGCAGCCGAAAGGGGCAAGGCAGCCGAAGGCCAGCAGACGACAGCGACGACGCCTGTGACG GCAACGGTCAGCAACCCGCCGGTGATGCTCAGGAAGAGAGGCGACGAGGAGGTACCGCTTGCGACGACGACGATC CGGCCGGCCACGAGCAAACCGGCCGCCAATGGAAAGGCTACTGGGCCGTCTGCGAGCAACACCAACAAGGGCGGC AAGGCCACGGGTGGTCAGCAGAAGAAGGCGCCGACGGTGACGGCGGGTGCGACTCGAGCCTTTGTCAAGCACGCC AACGCATCGCAGGGGGTAACGGAAGCATCGCTGCGGCAGGCACTGGAGGCGTTTGGGGCGGTGACGCAGGTCGAG GTGGACAAGCGCAAGGGCTTCGCCTACGTCGACTTTGCCGATCACGACGGGCTCGTCAAGGCCATGGGCGCGGGA ACCGTGCAGGTGGCCCAGAGCGCGGTGCAGGTGGTGGAGCGGCGGGACAAGAAGCCGGCGACGGGAGGCGGGCCG GAGAAGGGAGCGGGACGGGGCCGGCGCGGGCGTGGAGGCGGAGGCGGAGGCGGAGGTGCCAAGGCCAACGGCACG GCTCCGGCGGCGGTGGCAGCGACTACGGGGGGATCCGGATGA |
| Transcript | >Ophun1|4568 ATGTCCGCGTCACCGGCGCTGTCCCGTAGGACCGATGGTCCGCTCCCTCCGGACAAGGGAAAGTCGTCTCACCAT GTCCATCCGCAGCGACCGTCTCGTGGGGCGGAAAAGGCTTCGGATTCTGTCAAGAGCTCCGGTGAGCCGTCGAAA CGAACAAAGTCTAGATCTCCCAGTCAGGGAGAAAAACTCATCATCCGCCGCCTGCCCCCGGGCATGACCGAGGCC GAATTCGTCGCTATTCTCGGCTCCGACTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTTTTGCCCCGGA AAAGTCTCTGTCGATCCTTCGAAGCAGTCTCGCCCGGGCAGGGCCTATCTTCATCTCACGCGAAAAGACGACATG ATGGCTCTCAGCCAGGTCGTGCGCGCCGCCACGTGGGAAGACGCCAAGTTGACGTTTACGAGCCCCGCGCTCGTT GGCCCGCCAAGCCTCGAGTTTGCGACGTACAAGAAGATACCCAGCACCCGCCGGCGAGGCGACCCTCGTCAGGGC ACCATCGATCAAGACCCCGAGTTCATGGCTTTCCTCGAAGGCCTCGCAAACCCGGTCCCTTACAAGGAGAGCGTT GATGTTGAAGACGCCGACGACGGAAACAAGGATGACGGCAAGATAACAACGACGCCGCTCATCGAGTATCTCCGT GAGAAAAAGGCCAACAAGGGCAAGGAGACTGCCAAAAACGCCAAGGGCAAGGCAGCTGCTAGAGAAGACGACAAG AAGAAGACGAGAGACGCAAAAGGCGACAAATCGGTCAAGACGGCAGCCAAAGAGCCCGTCAAGATTTTGATGAAG AAGGCCGCAGCTGAGCCAGCCCCCGAGGTGGTGGCCAGTCCAGTGCCGCCTGTCAGCGCCGTAGCCGACGCTCCC AAAGGTCGTCGCGCCGGCATAGCGGCCGCCGCGCGCATCCTGCAGCGCGACCTCGGCTTGAGCCCGGGCAGCGCC CACCGACGAGCAAGACACGACGCCGCCAAAGCAGAGGCAGCTTCGAGCAAGGAAGCTGTCGGAGAAGCTGCACCG CCACCGTCGACGACGGAAGCCGCCAGCAGCAAAATTACAGTCGCGACCAAGCAGCCGCAGGCGCCGGGCCGTAGG GTTCGCAGCGGCAAGGCAGCCGAAAGGGGCAAGGCAGCCGAAGGCCAGCAGACGACAGCGACGACGCCTGTGACG GCAACGGTCAGCAACCCGCCGGTGATGCTCAGGAAGAGAGGCGACGAGGAGGTACCGCTTGCGACGACGACGATC CGGCCGGCCACGAGCAAACCGGCCGCCAATGGAAAGGCTACTGGGCCGTCTGCGAGCAACACCAACAAGGGCGGC AAGGCCACGGGTGGTCAGCAGAAGAAGGCGCCGACGGTGACGGCGGGTGCGACTCGAGCCTTTGTCAAGCACGCC AACGCATCGCAGGGGGTAACGGAAGCATCGCTGCGGCAGGCACTGGAGGCGTTTGGGGCGGTGACGCAGGTCGAG GTGGACAAGCGCAAGGGCTTCGCCTACGTCGACTTTGCCGATCACGACGGGCTCGTCAAGGCCATGGGCGCGGGA ACCGTGCAGGTGGCCCAGAGCGCGGTGCAGGTGGTGGAGCGGCGGGACAAGAAGCCGGCGACGGGAGGCGGGCCG GAGAAGGGAGCGGGACGGGGCCGGCGCGGGCGTGGAGGCGGAGGCGGAGGCGGAGGTGCCAAGGCCAACGGCACG GCTCCGGCGGCGGTGGCAGCGACTACGGGGGGATCCGGATGA |
| Gene | >Ophun1|4568 ATGTCCGCGTCACCGGCGCTGTCCCGTAGGACCGATGGTCCGCTCCCTCCGGACAAGGTGAGAGAGGCACAACTT GACAAGGCAGCGCGCCGCCTCGCTTTTTCTGACGGCCATGTCTCCAGGGAAAGTCGTCTCACCATGTCCATCCGC AGCGACCGTCTCGTGGGGCGGAAAAGGCTTCGGATTCTGTCAAGGTGAGCTCGCGGTTGCTTCCATCTGCCCGTG TCTGGGCTGACGCCTCGGTGTGCAGAGCTCCGGTGAGCCGTCGAAACGAACAAAGTCTAGATCTCCCAGTCAGGG AGAAAAACTCATCATCCGCCGCCTGCCCCCGGGCATGACCGAGGCCGAATTCGTCGCTATTCTCGGCTCCGACTG GGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTTTTGCCCCGGAAAAGTCTCTGTCGAGTTCGTCCTCGTGCG CCCCGTGCTGCTGATGGTGCCAAGGCACGAGCACCCGGCACTGACGATTCTCGCCCCAGTCCTTCGAAGCAGTCT CGCCCGGGCAGGGCCTATCTTCATCTCACGCGAAAAGACGACATGATGGCTCTCAGCCAGGTCGTGCGCGCCGCC ACGTGGGAAGACGCCAAGTTGACGTTTACGAGCCCCGCGCTCGTTGGCCCGCCAAGCCTCGAGTTTGCGACGTAC AAGAAGATACCCAGCACCCGCCGGCGAGGCGACCCTCGTCAGGGCACCATCGATCAAGACCCCGAGTTCATGGCT TTCCTCGAAGGCCTCGCAAACCCGGTCCCTTACAAGGAGAGCGTTGATGTTGAAGACGCCGACGACGGAAACAAG GATGACGGCAAGATAACAACGACGCCGCTCATCGAGTATCTCCGTGAGAAAAAGGCCAACAAGGGCAAGGAGACT GCCAAAAACGCCAAGGGCAAGGCAGCTGCTAGAGAAGACGACAAGAAGAAGACGAGAGACGCAAAAGGCGACAAA TCGGTCAAGACGGCAGCCAAAGAGCCCGTCAAGATTTTGATGAAGAAGGCCGCAGCTGAGCCAGCCCCCGAGGTG GTGGCCAGTCCAGTGCCGCCTGTCAGCGCCGTAGCCGACGCTCCCAAAGGTCGTCGCGCCGGCATAGCGGCCGCC GCGCGCATCCTGCAGCGCGACCTCGGCTTGAGCCCGGGCAGCGCCCACCGACGAGCAAGACACGACGCCGCCAAA GCAGAGGCAGCTTCGAGCAAGGAAGCTGTCGGAGAAGCTGCACCGCCACCGTCGACGACGGAAGCCGCCAGCAGC AAAATTACAGTCGCGACCAAGCAGCCGCAGGCGCCGGGCCGTAGGGTTCGCAGCGGCAAGGCAGCCGAAAGGGGC AAGGCAGCCGAAGGCCAGCAGACGACAGCGACGACGCCTGTGACGGCAACGGTCAGCAACCCGCCGGTGATGCTC AGGAAGAGAGGCGACGAGGAGGTACCGCTTGCGACGACGACGATCCGGCCGGCCACGAGCAAACCGGCCGCCAAT GGAAAGGCTACTGGGCCGTCTGCGAGCAACACCAACAAGGGCGGCAAGGCCACGGGTGGTCAGCAGAAGAAGGCG CCGACGGTGACGGCGGGTGCGACTCGAGCCTTTGTCAAGCACGCCAACGCATCGCAGGGGGTAACGGAAGCATCG CTGCGGCAGGCACTGGAGGCGTTTGGGGCGGTGACGCAGGTCGAGGTGGACAAGCGCAAGGGCTTCGCCTACGTC GACTTTGCCGATCACGACGGGCTCGTCAAGGCCATGGGCGCGGGAACCGTGCAGGTGGCCCAGAGCGCGGTGCAG GTGGTGGAGCGGCGGGACAAGAAGCCGGCGACGGGAGGCGGGCCGGAGAAGGGAGCGGGACGGGGCCGGCGCGGG CGTGGAGGCGGAGGCGGAGGCGGAGGTGCCAAGGCCAACGGCACGGCTCCGGCGGCGGTGGCAGCGACTACGGGG GGATCCGGATGA |