© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4403 |
| Gene name | |
| Location | Contig_405:7072..7789 |
| Strand | - |
| Gene length (bp) | 717 |
| Transcript length (bp) | 717 |
| Coding sequence length (bp) | 717 |
| Protein length (aa) | 239 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01868 | RNase_P-MRP_p29 | Ribonuclease P/MRP, subunit p29 | 7.1E-27 | 137 | 228 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O95707|RPP29_HUMAN | Ribonuclease P protein subunit p29 OS=Homo sapiens GN=POP4 PE=1 SV=2 | 86 | 238 | 1.0E-24 |
| sp|Q5R7B0|RPP29_PONAB | Ribonuclease P protein subunit p29 OS=Pongo abelii GN=POP4 PE=2 SV=1 | 86 | 238 | 2.0E-24 |
| sp|Q5M882|RPP29_RAT | Ribonuclease P protein subunit p29 OS=Rattus norvegicus GN=Pop4 PE=2 SV=1 | 86 | 238 | 3.0E-24 |
| sp|Q9CR08|RPP29_MOUSE | Ribonuclease P protein subunit p29 OS=Mus musculus GN=Pop4 PE=2 SV=1 | 78 | 231 | 6.0E-24 |
| sp|Q2KIB9|RPP29_BOVIN | Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1 | 86 | 238 | 8.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O95707|RPP29_HUMAN | Ribonuclease P protein subunit p29 OS=Homo sapiens GN=POP4 PE=1 SV=2 | 86 | 238 | 1.0E-24 |
| sp|Q5R7B0|RPP29_PONAB | Ribonuclease P protein subunit p29 OS=Pongo abelii GN=POP4 PE=2 SV=1 | 86 | 238 | 2.0E-24 |
| sp|Q5M882|RPP29_RAT | Ribonuclease P protein subunit p29 OS=Rattus norvegicus GN=Pop4 PE=2 SV=1 | 86 | 238 | 3.0E-24 |
| sp|Q9CR08|RPP29_MOUSE | Ribonuclease P protein subunit p29 OS=Mus musculus GN=Pop4 PE=2 SV=1 | 78 | 231 | 6.0E-24 |
| sp|Q2KIB9|RPP29_BOVIN | Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1 | 86 | 238 | 8.0E-24 |
| sp|Q9P7W9|RNP1_SCHPO | Probable ribonuclease P protein subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.01c PE=3 SV=2 | 31 | 238 | 8.0E-18 |
| sp|P38336|POP4_YEAST | RNases MRP/P 32.9 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP4 PE=1 SV=1 | 105 | 238 | 4.0E-17 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0006396 | RNA processing | Yes |
| GO:0001682 | tRNA 5'-leader removal | Yes |
| GO:0030677 | ribonuclease P complex | Yes |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:1902555 | endoribonuclease complex | No |
| GO:0009987 | cellular process | No |
| GO:1902494 | catalytic complex | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0000966 | RNA 5'-end processing | No |
| GO:0008033 | tRNA processing | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0099116 | tRNA 5'-end processing | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4403 MASFEDQRYKQQQQQQQHADPQAAAVQDLLAKAHSPESARRIYATKIQHRTLHLRPSSPPPAVTNAREARRKARE STRKRGKPGPLSNRERRKLGLDDVPRRGHRYEIYEPLHQLWLGYMRETLGDDLYSGGPMAAAKLASAEFHGALTE VVRSRCPSRVGIKGIVVRDRKFVMEIVPRRGGLKVVPKEGTTFRFQVTPEQTTERGEPFAFEVLGDQLMVRSADR ANKKYKTHFLPDL* |
| Coding | >Ophun1|4403 ATGGCTAGCTTCGAGGACCAGAGATATAAGCAGCAGCAGCAGCAGCAGCAGCACGCTGATCCGCAAGCTGCCGCC GTTCAGGACCTCCTCGCAAAAGCCCATTCGCCCGAGAGCGCAAGGCGCATCTACGCTACCAAGATCCAGCATCGA ACTCTTCACCTACGACCCTCGTCGCCGCCGCCAGCCGTCACCAACGCCCGCGAGGCCCGAAGAAAGGCCCGCGAG AGCACTAGGAAACGTGGCAAGCCCGGCCCCTTGTCGAATCGCGAGCGGCGCAAACTCGGCCTCGACGACGTGCCC CGGCGCGGCCACCGTTACGAGATATACGAGCCGCTTCATCAGCTCTGGCTGGGCTACATGCGCGAAACGCTGGGC GACGACTTGTATAGCGGTGGACCCATGGCCGCTGCCAAGCTGGCCAGCGCCGAGTTCCACGGGGCTCTGACCGAG GTGGTCCGGAGTCGATGTCCGAGCCGGGTGGGGATAAAGGGCATCGTCGTCCGCGATCGCAAGTTTGTCATGGAG ATTGTCCCCAGAAGGGGAGGCCTCAAGGTGGTGCCCAAGGAGGGTACCACGTTCCGCTTCCAAGTCACGCCGGAG CAGACGACGGAGCGAGGCGAACCGTTTGCTTTCGAAGTTCTCGGCGACCAGCTGATGGTCAGGTCGGCGGACCGG GCGAACAAGAAGTACAAGACTCACTTTCTCCCTGATCTTTGA |
| Transcript | >Ophun1|4403 ATGGCTAGCTTCGAGGACCAGAGATATAAGCAGCAGCAGCAGCAGCAGCAGCACGCTGATCCGCAAGCTGCCGCC GTTCAGGACCTCCTCGCAAAAGCCCATTCGCCCGAGAGCGCAAGGCGCATCTACGCTACCAAGATCCAGCATCGA ACTCTTCACCTACGACCCTCGTCGCCGCCGCCAGCCGTCACCAACGCCCGCGAGGCCCGAAGAAAGGCCCGCGAG AGCACTAGGAAACGTGGCAAGCCCGGCCCCTTGTCGAATCGCGAGCGGCGCAAACTCGGCCTCGACGACGTGCCC CGGCGCGGCCACCGTTACGAGATATACGAGCCGCTTCATCAGCTCTGGCTGGGCTACATGCGCGAAACGCTGGGC GACGACTTGTATAGCGGTGGACCCATGGCCGCTGCCAAGCTGGCCAGCGCCGAGTTCCACGGGGCTCTGACCGAG GTGGTCCGGAGTCGATGTCCGAGCCGGGTGGGGATAAAGGGCATCGTCGTCCGCGATCGCAAGTTTGTCATGGAG ATTGTCCCCAGAAGGGGAGGCCTCAAGGTGGTGCCCAAGGAGGGTACCACGTTCCGCTTCCAAGTCACGCCGGAG CAGACGACGGAGCGAGGCGAACCGTTTGCTTTCGAAGTTCTCGGCGACCAGCTGATGGTCAGGTCGGCGGACCGG GCGAACAAGAAGTACAAGACTCACTTTCTCCCTGATCTTTGA |
| Gene | >Ophun1|4403 ATGGCTAGCTTCGAGGACCAGAGATATAAGCAGCAGCAGCAGCAGCAGCAGCACGCTGATCCGCAAGCTGCCGCC GTTCAGGACCTCCTCGCAAAAGCCCATTCGCCCGAGAGCGCAAGGCGCATCTACGCTACCAAGATCCAGCATCGA ACTCTTCACCTACGACCCTCGTCGCCGCCGCCAGCCGTCACCAACGCCCGCGAGGCCCGAAGAAAGGCCCGCGAG AGCACTAGGAAACGTGGCAAGCCCGGCCCCTTGTCGAATCGCGAGCGGCGCAAACTCGGCCTCGACGACGTGCCC CGGCGCGGCCACCGTTACGAGATATACGAGCCGCTTCATCAGCTCTGGCTGGGCTACATGCGCGAAACGCTGGGC GACGACTTGTATAGCGGTGGACCCATGGCCGCTGCCAAGCTGGCCAGCGCCGAGTTCCACGGGGCTCTGACCGAG GTGGTCCGGAGTCGATGTCCGAGCCGGGTGGGGATAAAGGGCATCGTCGTCCGCGATCGCAAGTTTGTCATGGAG ATTGTCCCCAGAAGGGGAGGCCTCAAGGTGGTGCCCAAGGAGGGTACCACGTTCCGCTTCCAAGTCACGCCGGAG CAGACGACGGAGCGAGGCGAACCGTTTGCTTTCGAAGTTCTCGGCGACCAGCTGATGGTCAGGTCGGCGGACCGG GCGAACAAGAAGTACAAGACTCACTTTCTCCCTGATCTTTGA |