© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4383 |
| Gene name | |
| Location | Contig_401:14006..15149 |
| Strand | - |
| Gene length (bp) | 1143 |
| Transcript length (bp) | 1086 |
| Coding sequence length (bp) | 1086 |
| Protein length (aa) | 362 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07970 | COPIIcoated_ERV | Endoplasmic reticulum vesicle transporter | 8.0E-89 | 74 | 343 |
| PF13850 | ERGIC_N | Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) | 1.6E-07 | 1 | 29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09895|YAI8_SCHPO | Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 | 1 | 355 | 9.0E-88 |
| sp|Q9Y282|ERGI3_HUMAN | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1 | 1 | 355 | 1.0E-70 |
| sp|Q6NVS2|ERGI3_XENTR | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 | 1 | 355 | 1.0E-70 |
| sp|Q5EAE0|ERGI3_BOVIN | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1 | 1 | 355 | 3.0E-70 |
| sp|Q5R8G3|ERGI3_PONAB | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1 | 1 | 355 | 4.0E-70 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09895|YAI8_SCHPO | Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 | 1 | 355 | 9.0E-88 |
| sp|Q9Y282|ERGI3_HUMAN | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1 | 1 | 355 | 1.0E-70 |
| sp|Q6NVS2|ERGI3_XENTR | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 | 1 | 355 | 1.0E-70 |
| sp|Q5EAE0|ERGI3_BOVIN | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1 | 1 | 355 | 3.0E-70 |
| sp|Q5R8G3|ERGI3_PONAB | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1 | 1 | 355 | 4.0E-70 |
| sp|Q803I2|ERGI3_DANRE | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1 | 1 | 355 | 5.0E-70 |
| sp|Q9CQE7|ERGI3_MOUSE | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=1 SV=1 | 1 | 355 | 6.0E-69 |
| sp|Q66KH2|ERGI3_XENLA | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1 | 1 | 355 | 2.0E-67 |
| sp|P39727|ERV46_YEAST | ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2 | 1 | 352 | 4.0E-67 |
| sp|Q54DW2|ERGI3_DICDI | Probable endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3 SV=1 | 1 | 355 | 4.0E-67 |
| sp|Q4R8X1|ERGI3_MACFA | Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1 | 1 | 355 | 7.0E-67 |
| sp|Q7T2D4|ERGI2_DANRE | Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Danio rerio GN=ergic2 PE=2 SV=1 | 127 | 337 | 1.0E-21 |
| sp|Q4R5C3|ERGI2_MACFA | Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1 | 126 | 337 | 2.0E-20 |
| sp|Q96RQ1|ERGI2_HUMAN | Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens GN=ERGIC2 PE=1 SV=2 | 126 | 337 | 5.0E-20 |
| sp|Q4V8Y6|ERGI1_DANRE | Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Danio rerio GN=ergic1 PE=2 SV=1 | 131 | 357 | 6.0E-20 |
| sp|Q5EHU7|ERGI2_GECJA | Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1 | 126 | 337 | 1.0E-19 |
| sp|Q9CR89|ERGI2_MOUSE | Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Mus musculus GN=Ergic2 PE=1 SV=1 | 130 | 337 | 3.0E-19 |
| sp|Q9DC16|ERGI1_MOUSE | Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1 | 123 | 357 | 2.0E-18 |
| sp|Q969X5|ERGI1_HUMAN | Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1 | 123 | 357 | 6.0E-18 |
| sp|Q6NS19|ERGI1_XENLA | Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Xenopus laevis GN=ergic1 PE=2 SV=1 | 123 | 357 | 1.0E-15 |
| sp|O94283|ERV41_SCHPO | ER-derived vesicles protein 41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv41 PE=1 SV=1 | 108 | 344 | 9.0E-15 |
| sp|Q9T042|PDI54_ARATH | Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1 | 131 | 356 | 6.0E-11 |
| sp|Q69SA9|PDI54_ORYSJ | Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1 | 123 | 355 | 2.0E-10 |
| sp|Q04651|ERV41_YEAST | ER-derived vesicles protein ERV41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV41 PE=1 SV=1 | 131 | 331 | 2.0E-07 |
| sp|Q9LJU2|PDI53_ARATH | Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1 | 131 | 355 | 8.0E-07 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 320 | 342 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3935 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4383 MEIHLNFTFPKMPCELLTLDVMDVSGEQQHGVAHGVSKVRLRPQSQGGGVIDIKSLALHDETADHLDPKYCGECY GASPPATAKKSGCCNTCDEVREAYSAQGWAFGRGEGVEQCEREHYAEKLDAQREEGCRIEGALQVNKVVGNFHMA PGRSFSNGNIHVHDLKNYWDTPDGKKHDFTHTIHQLRFGPQLPDHVKQKLGGSGAMPWTNHHLNPLDGSQHDTTD SNLNYMYFVKIVPTSYLPLGWEKKMQRLSGTLDGDGSVETHQYSVTSHKRSLSGGNDAAEGHAERQHSKGGIPGV FFSYDISPMKVVNREEQSKSFLGFLAGLCAIVGGTLTVAAAFDRGLFEGATRLKKMRSKDL* |
| Coding | >Ophun1|4383 ATGGAGATACACCTCAACTTTACCTTTCCCAAGATGCCCTGCGAGCTGCTCACGCTGGACGTCATGGACGTCTCG GGCGAGCAGCAGCATGGCGTCGCCCACGGCGTCAGCAAGGTCCGGCTGCGGCCTCAGTCTCAGGGCGGCGGCGTC ATCGATATCAAATCGCTGGCCCTCCATGACGAAACGGCCGATCACCTGGATCCCAAGTACTGTGGCGAGTGTTAC GGAGCCTCGCCCCCTGCCACGGCCAAGAAGTCGGGCTGCTGCAACACGTGCGACGAGGTCCGCGAGGCGTACTCC GCTCAGGGATGGGCCTTCGGAAGGGGAGAGGGCGTCGAGCAGTGCGAGCGTGAGCACTATGCCGAGAAGCTCGAT GCTCAGAGAGAGGAGGGCTGTCGTATCGAGGGAGCTCTGCAGGTTAACAAGGTGGTTGGTAACTTTCACATGGCG CCTGGACGCAGTTTTAGCAACGGCAATATCCACGTTCACGACCTCAAGAACTACTGGGACACGCCCGACGGGAAG AAGCACGACTTTACCCACACCATTCATCAGCTGCGTTTCGGCCCTCAGCTGCCGGACCATGTCAAGCAGAAGCTG GGTGGCTCCGGGGCCATGCCATGGACGAACCACCACCTCAATCCGCTGGATGGGTCTCAGCACGACACGACTGAT TCGAATCTCAACTACATGTACTTTGTCAAGATTGTGCCGACGTCGTATCTGCCTCTCGGCTGGGAGAAGAAGATG CAGCGGCTCTCGGGAACCCTGGACGGTGATGGTAGCGTCGAAACACACCAGTATTCCGTCACGAGTCACAAGCGA AGTCTCAGCGGCGGGAACGATGCGGCAGAGGGCCACGCTGAACGTCAGCACTCCAAGGGAGGCATCCCCGGCGTC TTCTTCTCCTACGACATCTCGCCGATGAAGGTGGTCAACCGCGAGGAGCAATCCAAATCATTCCTCGGTTTCCTC GCGGGTCTCTGTGCTATCGTGGGTGGCACGCTGACAGTGGCGGCTGCTTTTGACAGGGGGCTGTTTGAGGGCGCG ACGCGGCTGAAGAAGATGCGGTCCAAGGACCTGTGA |
| Transcript | >Ophun1|4383 ATGGAGATACACCTCAACTTTACCTTTCCCAAGATGCCCTGCGAGCTGCTCACGCTGGACGTCATGGACGTCTCG GGCGAGCAGCAGCATGGCGTCGCCCACGGCGTCAGCAAGGTCCGGCTGCGGCCTCAGTCTCAGGGCGGCGGCGTC ATCGATATCAAATCGCTGGCCCTCCATGACGAAACGGCCGATCACCTGGATCCCAAGTACTGTGGCGAGTGTTAC GGAGCCTCGCCCCCTGCCACGGCCAAGAAGTCGGGCTGCTGCAACACGTGCGACGAGGTCCGCGAGGCGTACTCC GCTCAGGGATGGGCCTTCGGAAGGGGAGAGGGCGTCGAGCAGTGCGAGCGTGAGCACTATGCCGAGAAGCTCGAT GCTCAGAGAGAGGAGGGCTGTCGTATCGAGGGAGCTCTGCAGGTTAACAAGGTGGTTGGTAACTTTCACATGGCG CCTGGACGCAGTTTTAGCAACGGCAATATCCACGTTCACGACCTCAAGAACTACTGGGACACGCCCGACGGGAAG AAGCACGACTTTACCCACACCATTCATCAGCTGCGTTTCGGCCCTCAGCTGCCGGACCATGTCAAGCAGAAGCTG GGTGGCTCCGGGGCCATGCCATGGACGAACCACCACCTCAATCCGCTGGATGGGTCTCAGCACGACACGACTGAT TCGAATCTCAACTACATGTACTTTGTCAAGATTGTGCCGACGTCGTATCTGCCTCTCGGCTGGGAGAAGAAGATG CAGCGGCTCTCGGGAACCCTGGACGGTGATGGTAGCGTCGAAACACACCAGTATTCCGTCACGAGTCACAAGCGA AGTCTCAGCGGCGGGAACGATGCGGCAGAGGGCCACGCTGAACGTCAGCACTCCAAGGGAGGCATCCCCGGCGTC TTCTTCTCCTACGACATCTCGCCGATGAAGGTGGTCAACCGCGAGGAGCAATCCAAATCATTCCTCGGTTTCCTC GCGGGTCTCTGTGCTATCGTGGGTGGCACGCTGACAGTGGCGGCTGCTTTTGACAGGGGGCTGTTTGAGGGCGCG ACGCGGCTGAAGAAGATGCGGTCCAAGGACCTGTGA |
| Gene | >Ophun1|4383 ATGGAGATACACCTCAACTTTACCTTTCCCAAGATGCCCTGCGAGCTGCTCACGCTGGACGTCATGGACGTCTCG GGCGAGCAGCAGCATGGCGTCGCCCACGGCGTCAGCAAGGTCCGGCTGCGGCCTCAGTCTCAGGGCGGCGGCGTC ATCGATATCAAATCGCTGGCCCTCCATGACGAAACGGCCGATCACCTGGATCCCAAGTACTGTGGCGAGTGTTAC GGAGCCTCGCCCCCTGCCACGGCCAAGAAGTCGGGCTGCTGCAACACGTGCGACGAGGTCCGCGAGGCGTACTCC GCTCAGGGATGGGCCTTCGGAAGGGGAGAGGGCGTCGAGCAGTGCGAGCGTGAGCACTATGCCGAGAAGCTCGAT GCTCAGAGAGAGGAGGGCTGTCGTATCGAGGGAGCTCTGCAGGTTAACAAGGTGGTTGGTAACTTTCACATGGCG CCTGGACGCAGTTTTAGCAACGGCAATATCCACGTTCACGACCTCAAGAACTACTGGGACACGCCCGACGGGAAG AAGCACGACTTTACCCACACCATTCATCAGCTGCGTTTCGGCCCTCAGCTGCCGGACCATGTCAAGCAGAAGCTG GGTGGCTCCGGGGCCATGCCATGGACGAACCACCACCTCAATCCGCTGGATGGGTCTCAGCACGACACGACTGAT TCGAATCTCAACTACATGTACTTTGTCAAGATTGTGCCGACGTCGTATCTGCCTCTCGGCTGGGAGAAGAAGATG CAGCGGCTCTCGGGAACCCTGGACGGTGATGGTAGCGTCGAAACACACCAGTATTCCGTCACGAGTCACAAGCGA AGTCTCAGCGGCGGGAACGATGCGGCAGAGGGCCACGCTGAACGTCAGCACTCCAAGGGAGGCATCCCCGGCGTC TTCTTCTCCTACGTGAGTTCTTCCTTGTTTGTATTCCTCATCTCATTGCAGTGCTAATAGCCGGCACAGGACATC TCGCCGATGAAGGTGGTCAACCGCGAGGAGCAATCCAAATCATTCCTCGGTTTCCTCGCGGGTCTCTGTGCTATC GTGGGTGGCACGCTGACAGTGGCGGCTGCTTTTGACAGGGGGCTGTTTGAGGGCGCGACGCGGCTGAAGAAGATG CGGTCCAAGGACCTGTGA |