Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|4340
Gene name
LocationContig_4:77714..78344
Strand+
Gene length (bp)630
Transcript length (bp)492
Coding sequence length (bp)492
Protein length (aa) 164

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01479 S4 S4 domain 7.6E-13 89 133

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP3 PE=1 SV=1 1 162 5.0E-66
sp|O13835|IMP3_SCHPO U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp3 PE=3 SV=1 2 163 8.0E-61
sp|Q01688|YS4L_PNECA Putative 37S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1 2 149 7.0E-48
sp|Q9NV31|IMP3_HUMAN U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1 1 162 1.0E-45
sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1 1 162 2.0E-44
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Swissprot ID Swissprot Description Start End E-value
sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP3 PE=1 SV=1 1 162 5.0E-66
sp|O13835|IMP3_SCHPO U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp3 PE=3 SV=1 2 163 8.0E-61
sp|Q01688|YS4L_PNECA Putative 37S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1 2 149 7.0E-48
sp|Q9NV31|IMP3_HUMAN U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1 1 162 1.0E-45
sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1 1 162 2.0E-44
sp|Q3T0M3|IMP3_BOVIN U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1 1 162 2.0E-44
sp|O01513|YS4L_CAEEL Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=3 SV=1 1 163 6.0E-41
sp|A3DMQ4|RS4_STAMF 30S ribosomal protein S4 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / JCM 9404 / F1) GN=rps4 PE=3 SV=1 55 150 7.0E-09
sp|O26142|RS4_METTH 30S ribosomal protein S4 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rps4 PE=3 SV=1 51 155 1.0E-08
sp|P39467|RS4_SULAC 30S ribosomal protein S4 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rps4 PE=3 SV=3 55 149 5.0E-08
sp|A1RWT8|RS4_THEPD 30S ribosomal protein S4 OS=Thermofilum pendens (strain Hrk 5) GN=rps4 PE=3 SV=1 53 144 5.0E-08
sp|Q96YV8|RS4_SULTO 30S ribosomal protein S4 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rps4 PE=3 SV=1 55 149 9.0E-08
sp|Q5JJF2|RS4_THEKO 30S ribosomal protein S4 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rps4 PE=3 SV=1 57 144 1.0E-07
sp|Q0W1V5|RS4_METAR 30S ribosomal protein S4 OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=rps4 PE=3 SV=1 41 156 2.0E-06
sp|A5UN53|RS4_METS3 30S ribosomal protein S4 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4 PE=3 SV=1 57 159 3.0E-06
sp|C5A251|RS4_THEGJ 30S ribosomal protein S4 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4 PE=3 SV=1 57 144 6.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No
GO:0003676 nucleic acid binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 50 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|4340
MVRKLKYHEQKLLRKTDFITYKQDKDHRDKLVARRYMIQKPEDYHRYNRICGKIETQLLDKLYDTGILSTRTKLS
SVEKGVTVSAFARRRLPVVMTRLRMAPTVQDATRLIEQGQVRVGTEPVTDPAYLVTRGREDFVTWVVGSGVKRNI
MKYRDQLDDFELL*
Coding >Ophun1|4340
ATGGTCCGCAAACTCAAATACCACGAGCAAAAGCTCCTGCGCAAAACAGACTTCATCACCTACAAGCAAGACAAG
GACCATCGCGACAAGTTGGTTGCGCGCCGGTACATGATTCAGAAGCCCGAGGACTACCATCGCTATAACCGTATC
TGCGGTAAGATCGAAACGCAGCTGCTGGACAAGCTCTACGACACGGGCATCCTGTCGACGCGCACGAAGCTATCG
TCGGTGGAAAAGGGCGTGACGGTCAGCGCCTTTGCCCGCCGCCGTCTGCCCGTCGTCATGACGAGGCTGAGGATG
GCGCCTACCGTCCAGGACGCTACGCGGTTGATTGAGCAGGGGCAGGTGCGCGTGGGCACGGAGCCCGTTACCGAT
CCGGCGTATTTGGTTACGAGGGGGAGGGAGGATTTCGTGACGTGGGTTGTTGGGAGTGGTGTCAAGAGGAATATT
ATGAAGTACCGGGATCAGTTGGATGATTTCGAGTTGCTTTAG
Transcript >Ophun1|4340
ATGGTCCGCAAACTCAAATACCACGAGCAAAAGCTCCTGCGCAAAACAGACTTCATCACCTACAAGCAAGACAAG
GACCATCGCGACAAGTTGGTTGCGCGCCGGTACATGATTCAGAAGCCCGAGGACTACCATCGCTATAACCGTATC
TGCGGTAAGATCGAAACGCAGCTGCTGGACAAGCTCTACGACACGGGCATCCTGTCGACGCGCACGAAGCTATCG
TCGGTGGAAAAGGGCGTGACGGTCAGCGCCTTTGCCCGCCGCCGTCTGCCCGTCGTCATGACGAGGCTGAGGATG
GCGCCTACCGTCCAGGACGCTACGCGGTTGATTGAGCAGGGGCAGGTGCGCGTGGGCACGGAGCCCGTTACCGAT
CCGGCGTATTTGGTTACGAGGGGGAGGGAGGATTTCGTGACGTGGGTTGTTGGGAGTGGTGTCAAGAGGAATATT
ATGAAGTACCGGGATCAGTTGGATGATTTCGAGTTGCTTTAG
Gene >Ophun1|4340
ATGGTCCGCAAACTCAAATACCACGAGCAAAAGCTCCTGCGCAAAACAGACTTCATCACCTACAAGCAAGACAAG
GACCATCGCGACAAGTTGGTTGCGCGCCGGTACATGATTCAGAAGCCCGAGGACTACCATCGCTATAACCGTATC
TGCGGTGTGCGTGCCACCTCTCCTTTCTTAACTTCTCCTCTGTTGCTGCAGGATGCATTGCTGACGGGGGGTTGA
TGGGAGTAGTCTCTTCGTCAAATAGCACATCGTCTCACCCTCCTCCCCCCCGACAACAAAACGCGCCAGAAGATC
GAAACGCAGCTGCTGGACAAGCTCTACGACACGGGCATCCTGTCGACGCGCACGAAGCTATCGTCGGTGGAAAAG
GGCGTGACGGTCAGCGCCTTTGCCCGCCGCCGTCTGCCCGTCGTCATGACGAGGCTGAGGATGGCGCCTACCGTC
CAGGACGCTACGCGGTTGATTGAGCAGGGGCAGGTGCGCGTGGGCACGGAGCCCGTTACCGATCCGGCGTATTTG
GTTACGAGGGGGAGGGAGGATTTCGTGACGTGGGTTGTTGGGAGTGGTGTCAAGAGGAATATTATGAAGTACCGG
GATCAGTTGGATGATTTCGAGTTGCTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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