Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|4286
Gene name
LocationContig_396:9000..9542
Strand+
Gene length (bp)542
Transcript length (bp)435
Coding sequence length (bp)435
Protein length (aa) 145

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06140 Ifi-6-16 Interferon-induced 6-16 family 1.2E-08 64 132

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0110165 cellular anatomical entity No
GO:0031224 intrinsic component of membrane No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.5

Transmembrane Domains

Domain # Start End Length
1 55 77 22
2 82 104 22
3 119 141 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|4286
MFLPPKLPDGVASIPWDGVRRGMGWLEGAFDSAWEWLKSSPFDPLVDWLSRSHAATSIIIWAATFSIVIFIIPWL
GFGPAGIVLGSLAAWFQSFMYGGFTPAGALFAQLTSIAMTGMLFPLALILAAVIATVVVIIVWICGGGR*
Coding >Ophun1|4286
ATGTTTCTGCCGCCCAAGCTGCCTGACGGTGTGGCATCTATCCCCTGGGATGGAGTGCGTCGTGGGATGGGATGG
CTCGAAGGCGCCTTCGACTCGGCTTGGGAGTGGCTGAAGAGCTCGCCATTTGACCCTCTGGTCGATTGGCTCTCT
CGATCTCACGCCGCGACGAGCATCATTATCTGGGCTGCCACATTCAGCATCGTCATCTTCATCATCCCATGGTTG
GGCTTCGGACCCGCGGGAATCGTTCTTGGATCCCTCGCCGCTTGGTTCCAGTCCTTCATGTACGGAGGCTTCACT
CCTGCTGGTGCACTTTTTGCGCAGTTGACATCCATTGCTATGACTGGCATGCTTTTCCCGTTGGCCTTGATTCTG
GCTGCGGTGATTGCCACGGTTGTCGTCATTATCGTCTGGATCTGCGGCGGAGGACGATAG
Transcript >Ophun1|4286
ATGTTTCTGCCGCCCAAGCTGCCTGACGGTGTGGCATCTATCCCCTGGGATGGAGTGCGTCGTGGGATGGGATGG
CTCGAAGGCGCCTTCGACTCGGCTTGGGAGTGGCTGAAGAGCTCGCCATTTGACCCTCTGGTCGATTGGCTCTCT
CGATCTCACGCCGCGACGAGCATCATTATCTGGGCTGCCACATTCAGCATCGTCATCTTCATCATCCCATGGTTG
GGCTTCGGACCCGCGGGAATCGTTCTTGGATCCCTCGCCGCTTGGTTCCAGTCCTTCATGTACGGAGGCTTCACT
CCTGCTGGTGCACTTTTTGCGCAGTTGACATCCATTGCTATGACTGGCATGCTTTTCCCGTTGGCCTTGATTCTG
GCTGCGGTGATTGCCACGGTTGTCGTCATTATCGTCTGGATCTGCGGCGGAGGACGATAG
Gene >Ophun1|4286
ATGTTTCTGCCGCCCAAGCTGCCTGACGGTGTGGCATCTATCCCCTGGGATGGAGTGCGTCGTGGGATGGGATGG
CTCGAAGGCGCCTTCGACTCGGCTTGGGAGTGGCTGAAGAGCTCGCCATTTGACCCTCTGGTCGATTGGCTCTCT
CGATCTCGTCGTTCCCTCTCTGCTGCTCGTCTTCCGCTCAAACTTGCTGACTAGCGGTAGACGCCGCGACGAGCA
TCATTATCTGGGCTGCCACATTCAGCATCGTCATCTTCATCATCCCATGGTTGGGCTTCGGACCCGCGGGAATCG
TTCTTGGTCAGTCCCATCATGTCAACTCAAAGAAGACGCAGGCCTGTTGACACTGAGTAGGATCCCTCGCCGCTT
GGTTCCAGTCCTTCATGTACGGAGGCTTCACTCCTGCTGGTGCACTTTTTGCGCAGTTGACATCCATTGCTATGA
CTGGCATGCTTTTCCCGTTGGCCTTGATTCTGGCTGCGGTGATTGCCACGGTTGTCGTCATTATCGTCTGGATCT
GCGGCGGAGGACGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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