© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4233 |
| Gene name | |
| Location | Contig_39:30764..32282 |
| Strand | + |
| Gene length (bp) | 1518 |
| Transcript length (bp) | 1518 |
| Coding sequence length (bp) | 1518 |
| Protein length (aa) | 506 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 7.6E-09 | 142 | 180 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.4E-08 | 142 | 180 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 2.8E-08 | 142 | 180 |
| PF02176 | zf-TRAF | TRAF-type zinc finger | 1.7E-06 | 278 | 334 |
| PF15227 | zf-C3HC4_4 | zinc finger of C3HC4-type, RING | 2.9E-07 | 142 | 180 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.7E-06 | 142 | 183 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 1.7E-06 | 141 | 186 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q28DL4|TRAF6_XENTR | TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6 PE=2 SV=1 | 142 | 442 | 6.0E-17 |
| sp|Q6DJN2|TRF6B_XENLA | TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b PE=2 SV=1 | 74 | 404 | 9.0E-17 |
| sp|Q6IWL4|TRAF6_DANRE | TNF receptor-associated factor 6 OS=Danio rerio GN=traf6 PE=2 SV=2 | 92 | 337 | 8.0E-16 |
| sp|P70196|TRAF6_MOUSE | TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2 | 142 | 337 | 1.0E-15 |
| sp|B6CJY4|TRAF6_CERAT | TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2 SV=1 | 142 | 412 | 1.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q28DL4|TRAF6_XENTR | TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6 PE=2 SV=1 | 142 | 442 | 6.0E-17 |
| sp|Q6DJN2|TRF6B_XENLA | TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b PE=2 SV=1 | 74 | 404 | 9.0E-17 |
| sp|Q6IWL4|TRAF6_DANRE | TNF receptor-associated factor 6 OS=Danio rerio GN=traf6 PE=2 SV=2 | 92 | 337 | 8.0E-16 |
| sp|P70196|TRAF6_MOUSE | TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2 | 142 | 337 | 1.0E-15 |
| sp|B6CJY4|TRAF6_CERAT | TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2 SV=1 | 142 | 412 | 1.0E-15 |
| sp|B6CJY5|TRAF6_MACMU | TNF receptor-associated factor 6 OS=Macaca mulatta GN=TRAF6 PE=2 SV=1 | 142 | 412 | 1.0E-15 |
| sp|Q9Y4K3|TRAF6_HUMAN | TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1 | 142 | 412 | 2.0E-15 |
| sp|B5DF45|TRAF6_RAT | TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2 SV=1 | 142 | 337 | 3.0E-15 |
| sp|Q3ZCC3|TRAF6_BOVIN | TNF receptor-associated factor 6 OS=Bos taurus GN=TRAF6 PE=2 SV=1 | 142 | 337 | 1.0E-14 |
| sp|Q3MV19|TRF6A_XENLA | TNF receptor-associated factor 6-A OS=Xenopus laevis GN=traf6-a PE=1 SV=1 | 120 | 337 | 3.0E-14 |
| sp|A7XUJ6|TRAF6_PIG | TNF receptor-associated factor 6 OS=Sus scrofa GN=TRAF6 PE=2 SV=1 | 94 | 412 | 4.0E-14 |
| sp|Q60803|TRAF3_MOUSE | TNF receptor-associated factor 3 OS=Mus musculus GN=Traf3 PE=1 SV=2 | 102 | 335 | 7.0E-13 |
| sp|Q8N448|LNX2_HUMAN | Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1 | 131 | 233 | 8.0E-13 |
| sp|Q91XL2|LNX2_MOUSE | Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2 | 131 | 233 | 5.0E-12 |
| sp|P70191|TRAF5_MOUSE | TNF receptor-associated factor 5 OS=Mus musculus GN=Traf5 PE=1 SV=1 | 142 | 455 | 3.0E-11 |
| sp|Q13114|TRAF3_HUMAN | TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2 | 118 | 335 | 2.0E-10 |
| sp|Q1ZXR0|Y8444_DICDI | TNF receptor-associated factor family protein DDB_G0268444 OS=Dictyostelium discoideum GN=DDB_G0268444 PE=2 SV=1 | 142 | 398 | 1.0E-09 |
| sp|O00463|TRAF5_HUMAN | TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2 | 142 | 444 | 3.0E-09 |
| sp|Q61382|TRAF4_MOUSE | TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1 SV=2 | 140 | 309 | 3.0E-09 |
| sp|Q9BUZ4|TRAF4_HUMAN | TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1 | 140 | 309 | 4.0E-09 |
| sp|Q69ZS0|PZRN3_MOUSE | E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1 SV=3 | 132 | 385 | 1.0E-08 |
| sp|Q7ZW16|RNF41_DANRE | E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1 | 132 | 228 | 2.0E-08 |
| sp|Q557K2|Y3435_DICDI | TNF receptor-associated factor family protein DDB_G0273435/DDB_G0273505 OS=Dictyostelium discoideum GN=DDB_G0273435 PE=3 SV=1 | 130 | 382 | 4.0E-08 |
| sp|O70263|LNX1_MOUSE | E3 ubiquitin-protein ligase LNX OS=Mus musculus GN=Lnx1 PE=1 SV=1 | 132 | 257 | 4.0E-08 |
| sp|Q9UPQ7|PZRN3_HUMAN | E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2 | 132 | 385 | 5.0E-08 |
| sp|Q54FC5|Y0965_DICDI | TNF receptor-associated factor family protein DDB_G0290965 OS=Dictyostelium discoideum GN=DDB_G0290965 PE=3 SV=1 | 142 | 410 | 7.0E-08 |
| sp|Q557K0|Y3509_DICDI | TNF receptor-associated factor family protein DDB_G0273433/DDB_G0273509 OS=Dictyostelium discoideum GN=DDB_G0273433 PE=3 SV=1 | 142 | 383 | 9.0E-08 |
| sp|Q8BH75|RNF41_MOUSE | E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1 SV=1 | 132 | 230 | 2.0E-07 |
| sp|Q5R7T5|RNF41_PONAB | E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2 SV=1 | 132 | 230 | 2.0E-07 |
| sp|Q9H4P4|RNF41_HUMAN | E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2 | 132 | 230 | 2.0E-07 |
| sp|Q8TBB1|LNX1_HUMAN | E3 ubiquitin-protein ligase LNX OS=Homo sapiens GN=LNX1 PE=1 SV=1 | 128 | 257 | 2.0E-07 |
| sp|P68907|PZRN3_RAT | E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3 PE=1 SV=1 | 132 | 356 | 3.0E-07 |
| sp|Q5FWL3|RNF41_XENLA | E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2 SV=1 | 132 | 230 | 3.0E-07 |
| sp|Q54FB9|Y0971_DICDI | TNF receptor-associated factor family protein DDB_G0290971 OS=Dictyostelium discoideum GN=DDB_G0290971 PE=3 SV=1 | 140 | 318 | 9.0E-07 |
| sp|Q86K46|Y7243_DICDI | TNF receptor-associated factor family protein DDB_G0277243 OS=Dictyostelium discoideum GN=DDB_G0277243 PE=3 SV=1 | 142 | 391 | 2.0E-06 |
| sp|Q9CQ29|RN151_MOUSE | RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1 | 128 | 246 | 2.0E-06 |
| sp|P11467|DG17_DICDI | RING finger protein DG17 OS=Dictyostelium discoideum GN=zfaA PE=2 SV=2 | 142 | 371 | 3.0E-06 |
| sp|P15919|RAG1_MOUSE | V(D)J recombination-activating protein 1 OS=Mus musculus GN=Rag1 PE=1 SV=2 | 127 | 237 | 5.0E-06 |
| sp|Q867B5|RAG1_PIG | V(D)J recombination-activating protein 1 OS=Sus scrofa GN=RAG1 PE=3 SV=1 | 127 | 237 | 5.0E-06 |
| sp|Q55GA0|Y7754_DICDI | TNF receptor-associated factor family protein DDB_G0267754 OS=Dictyostelium discoideum GN=DDB_G0267754 PE=3 SV=1 | 142 | 335 | 6.0E-06 |
| sp|P15918|RAG1_HUMAN | V(D)J recombination-activating protein 1 OS=Homo sapiens GN=RAG1 PE=1 SV=2 | 140 | 238 | 7.0E-06 |
| sp|Q55GA8|Y7744_DICDI | TNF receptor-associated factor family protein DDB_G0267744 OS=Dictyostelium discoideum GN=DDB_G0267744 PE=3 SV=1 | 133 | 335 | 7.0E-06 |
| sp|Q2KHN1|RN151_HUMAN | RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1 | 128 | 249 | 8.0E-06 |
| sp|Q54YP8|Y7813_DICDI | TNF receptor-associated factor family protein DDB_G0278133 OS=Dictyostelium discoideum GN=DDB_G0278133 PE=3 SV=1 | 142 | 335 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046914 | transition metal ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4233 MSERPPENGAARHSASDSSDEGLRMSPAAARRFARRNLHRTSATPDLVTSLVRPPSPDAFYVAPGVHARRRPPPR TSASAAYSSDLIPLRPSVAAAGSDRRSGPLAPPHPSSLDIPARHGGTAIFDLYSLNYVADSDPCLVCPICHDPLV DPVTTPCDHTFCYRCLRRSIASSPSGTTCPIDRDPFSWLDCFTAARLVRTQLNALIVRCPHSGRGCSRELRREVV ERHATTECRYKDFACPDAACTGRARTKGDTCPHAESNCSLCDAKVQGAEVDVHLLTCPKAKTRCQGCWQLICRSQ LDAHRTLECDGVEIACPHQDVGCPARALRGDMGAHARMCSFHPDTPPGIIIRAQRELLQSHDDLSAELRDLRARQ TETDARIDELMAAQRGIDPIVHDKRTMQDLDAGFEEVHQNLTQLEARQSMWTMNQVMPIREEVTELRNNINMIRM HVNWLLNRSREEGRIRAANNTGSSVPIRSVSSGDGGPALPERRRSSATDMDLPRL* |
| Coding | >Ophun1|4233 ATGTCCGAGCGACCGCCGGAGAACGGCGCCGCTCGGCACTCGGCTTCCGACTCCAGCGACGAAGGCCTCCGAATG AGTCCCGCCGCCGCCCGTCGGTTCGCTAGGCGTAATCTGCACCGCACCTCGGCTACTCCCGATCTCGTCACCAGC CTCGTCCGTCCACCTTCGCCCGACGCCTTTTACGTCGCACCTGGCGTTCACGCCCGGCGTCGTCCGCCCCCGAGA ACATCGGCTTCCGCCGCCTATTCTTCCGACCTCATCCCACTCCGCCCTTCCGTTGCCGCAGCCGGCTCCGACCGC CGCTCTGGACCGCTCGCACCACCTCACCCGTCGTCGCTCGATATCCCCGCGCGCCACGGCGGCACCGCCATCTTC GACTTGTACTCCCTGAACTACGTCGCCGATTCGGATCCCTGTCTTGTCTGTCCCATCTGCCACGATCCGCTTGTC GATCCCGTAACGACACCATGCGATCACACCTTTTGCTATCGCTGCTTGCGACGCAGCATCGCCTCGAGTCCCTCT GGCACCACCTGTCCCATTGATAGGGACCCCTTCTCCTGGCTGGACTGCTTCACCGCCGCCAGGCTGGTCCGCACC CAGCTCAACGCCCTCATCGTCAGGTGTCCCCACAGCGGCCGCGGGTGCTCCCGCGAACTGCGTCGCGAGGTCGTC GAGAGGCATGCCACGACCGAGTGTCGCTACAAGGACTTTGCCTGCCCTGATGCCGCCTGTACGGGACGGGCGCGA ACCAAGGGCGACACTTGTCCTCACGCCGAATCCAACTGCTCGCTGTGCGACGCAAAGGTCCAAGGCGCCGAGGTC GACGTCCACCTGCTGACGTGCCCCAAGGCCAAGACCCGGTGTCAGGGCTGTTGGCAGCTCATCTGTCGGTCTCAG CTTGATGCCCACCGCACGCTCGAGTGCGACGGAGTCGAGATCGCCTGTCCGCATCAAGACGTCGGTTGTCCTGCG CGGGCCTTGCGCGGCGACATGGGTGCTCACGCGCGCATGTGTTCCTTTCACCCAGACACTCCTCCGGGCATCATT ATCCGGGCCCAGCGCGAGCTGCTCCAGTCTCACGACGACTTGTCGGCCGAGCTTCGTGACCTGAGGGCCCGGCAG ACTGAGACGGACGCCCGTATCGACGAGCTGATGGCGGCGCAGCGCGGCATCGACCCCATAGTCCACGATAAGCGC ACGATGCAGGATCTCGATGCCGGCTTCGAGGAGGTTCATCAGAATCTGACGCAGCTCGAGGCGCGGCAGAGCATG TGGACCATGAACCAGGTGATGCCTATTCGAGAGGAGGTGACGGAGCTGCGCAACAACATCAACATGATTCGCATG CACGTCAACTGGCTGCTCAACAGGAGTCGAGAGGAGGGCCGCATCCGGGCTGCCAATAACACGGGATCGTCGGTT CCCATCCGTAGCGTCAGCTCCGGCGACGGCGGGCCTGCACTGCCGGAGAGGAGGCGGTCGTCGGCGACGGACATG GACCTGCCGCGGCTTTAA |
| Transcript | >Ophun1|4233 ATGTCCGAGCGACCGCCGGAGAACGGCGCCGCTCGGCACTCGGCTTCCGACTCCAGCGACGAAGGCCTCCGAATG AGTCCCGCCGCCGCCCGTCGGTTCGCTAGGCGTAATCTGCACCGCACCTCGGCTACTCCCGATCTCGTCACCAGC CTCGTCCGTCCACCTTCGCCCGACGCCTTTTACGTCGCACCTGGCGTTCACGCCCGGCGTCGTCCGCCCCCGAGA ACATCGGCTTCCGCCGCCTATTCTTCCGACCTCATCCCACTCCGCCCTTCCGTTGCCGCAGCCGGCTCCGACCGC CGCTCTGGACCGCTCGCACCACCTCACCCGTCGTCGCTCGATATCCCCGCGCGCCACGGCGGCACCGCCATCTTC GACTTGTACTCCCTGAACTACGTCGCCGATTCGGATCCCTGTCTTGTCTGTCCCATCTGCCACGATCCGCTTGTC GATCCCGTAACGACACCATGCGATCACACCTTTTGCTATCGCTGCTTGCGACGCAGCATCGCCTCGAGTCCCTCT GGCACCACCTGTCCCATTGATAGGGACCCCTTCTCCTGGCTGGACTGCTTCACCGCCGCCAGGCTGGTCCGCACC CAGCTCAACGCCCTCATCGTCAGGTGTCCCCACAGCGGCCGCGGGTGCTCCCGCGAACTGCGTCGCGAGGTCGTC GAGAGGCATGCCACGACCGAGTGTCGCTACAAGGACTTTGCCTGCCCTGATGCCGCCTGTACGGGACGGGCGCGA ACCAAGGGCGACACTTGTCCTCACGCCGAATCCAACTGCTCGCTGTGCGACGCAAAGGTCCAAGGCGCCGAGGTC GACGTCCACCTGCTGACGTGCCCCAAGGCCAAGACCCGGTGTCAGGGCTGTTGGCAGCTCATCTGTCGGTCTCAG CTTGATGCCCACCGCACGCTCGAGTGCGACGGAGTCGAGATCGCCTGTCCGCATCAAGACGTCGGTTGTCCTGCG CGGGCCTTGCGCGGCGACATGGGTGCTCACGCGCGCATGTGTTCCTTTCACCCAGACACTCCTCCGGGCATCATT ATCCGGGCCCAGCGCGAGCTGCTCCAGTCTCACGACGACTTGTCGGCCGAGCTTCGTGACCTGAGGGCCCGGCAG ACTGAGACGGACGCCCGTATCGACGAGCTGATGGCGGCGCAGCGCGGCATCGACCCCATAGTCCACGATAAGCGC ACGATGCAGGATCTCGATGCCGGCTTCGAGGAGGTTCATCAGAATCTGACGCAGCTCGAGGCGCGGCAGAGCATG TGGACCATGAACCAGGTGATGCCTATTCGAGAGGAGGTGACGGAGCTGCGCAACAACATCAACATGATTCGCATG CACGTCAACTGGCTGCTCAACAGGAGTCGAGAGGAGGGCCGCATCCGGGCTGCCAATAACACGGGATCGTCGGTT CCCATCCGTAGCGTCAGCTCCGGCGACGGCGGGCCTGCACTGCCGGAGAGGAGGCGGTCGTCGGCGACGGACATG GACCTGCCGCGGCTTTAA |
| Gene | >Ophun1|4233 ATGTCCGAGCGACCGCCGGAGAACGGCGCCGCTCGGCACTCGGCTTCCGACTCCAGCGACGAAGGCCTCCGAATG AGTCCCGCCGCCGCCCGTCGGTTCGCTAGGCGTAATCTGCACCGCACCTCGGCTACTCCCGATCTCGTCACCAGC CTCGTCCGTCCACCTTCGCCCGACGCCTTTTACGTCGCACCTGGCGTTCACGCCCGGCGTCGTCCGCCCCCGAGA ACATCGGCTTCCGCCGCCTATTCTTCCGACCTCATCCCACTCCGCCCTTCCGTTGCCGCAGCCGGCTCCGACCGC CGCTCTGGACCGCTCGCACCACCTCACCCGTCGTCGCTCGATATCCCCGCGCGCCACGGCGGCACCGCCATCTTC GACTTGTACTCCCTGAACTACGTCGCCGATTCGGATCCCTGTCTTGTCTGTCCCATCTGCCACGATCCGCTTGTC GATCCCGTAACGACACCATGCGATCACACCTTTTGCTATCGCTGCTTGCGACGCAGCATCGCCTCGAGTCCCTCT GGCACCACCTGTCCCATTGATAGGGACCCCTTCTCCTGGCTGGACTGCTTCACCGCCGCCAGGCTGGTCCGCACC CAGCTCAACGCCCTCATCGTCAGGTGTCCCCACAGCGGCCGCGGGTGCTCCCGCGAACTGCGTCGCGAGGTCGTC GAGAGGCATGCCACGACCGAGTGTCGCTACAAGGACTTTGCCTGCCCTGATGCCGCCTGTACGGGACGGGCGCGA ACCAAGGGCGACACTTGTCCTCACGCCGAATCCAACTGCTCGCTGTGCGACGCAAAGGTCCAAGGCGCCGAGGTC GACGTCCACCTGCTGACGTGCCCCAAGGCCAAGACCCGGTGTCAGGGCTGTTGGCAGCTCATCTGTCGGTCTCAG CTTGATGCCCACCGCACGCTCGAGTGCGACGGAGTCGAGATCGCCTGTCCGCATCAAGACGTCGGTTGTCCTGCG CGGGCCTTGCGCGGCGACATGGGTGCTCACGCGCGCATGTGTTCCTTTCACCCAGACACTCCTCCGGGCATCATT ATCCGGGCCCAGCGCGAGCTGCTCCAGTCTCACGACGACTTGTCGGCCGAGCTTCGTGACCTGAGGGCCCGGCAG ACTGAGACGGACGCCCGTATCGACGAGCTGATGGCGGCGCAGCGCGGCATCGACCCCATAGTCCACGATAAGCGC ACGATGCAGGATCTCGATGCCGGCTTCGAGGAGGTTCATCAGAATCTGACGCAGCTCGAGGCGCGGCAGAGCATG TGGACCATGAACCAGGTGATGCCTATTCGAGAGGAGGTGACGGAGCTGCGCAACAACATCAACATGATTCGCATG CACGTCAACTGGCTGCTCAACAGGAGTCGAGAGGAGGGCCGCATCCGGGCTGCCAATAACACGGGATCGTCGGTT CCCATCCGTAGCGTCAGCTCCGGCGACGGCGGGCCTGCACTGCCGGAGAGGAGGCGGTCGTCGGCGACGGACATG GACCTGCCGCGGCTTTAA |