© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|4227 |
| Gene name | |
| Location | Contig_39:19355..20480 |
| Strand | + |
| Gene length (bp) | 1125 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09451 | ATG27 | Autophagy-related protein 27 | 2.0E-95 | 17 | 332 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4B086|ATG27_ARTBC | Autophagy-related protein 27 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01857 PE=1 SV=1 | 24 | 282 | 3.0E-29 |
| sp|Q6CBS9|ATG27_YARLI | Autophagy-related protein 27 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG27 PE=3 SV=1 | 236 | 336 | 9.0E-22 |
| sp|A7KAK7|ATG27_PICAN | Autophagy-related protein 27 OS=Pichia angusta GN=ATG27 PE=3 SV=1 | 231 | 336 | 2.0E-13 |
| sp|Q5A5S7|ATG27_CANAL | Autophagy-related protein 27 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ATG27 PE=3 SV=1 | 15 | 336 | 9.0E-11 |
| sp|Q6BM18|ATG27_DEBHA | Autophagy-related protein 27 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG27 PE=3 SV=2 | 13 | 336 | 9.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 265 | 287 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4227 MHPPQLSTTTLALGLALAPLQGLAMLRCENVRVDGHSFDLSQLGGPHSVVTSRYESIPDAHHNTTYTLDICKPLK KSGTVKKTEECPNGTRVCAIQRFLQGEKNVVDKVVAIAGSLENVGGSQFEYEATRLKTSDSNSDSQKEGLRLVLK GGKDPLVGPVGERREQKAIVEFLCDPNKKGDEGEWEAGDKYDKRSPDDDKGNDGKDQSAIEHQLKKEGAALVWES YGREKDADVLRLTWHTKFACEKRDGGNKDGGGSTSSHWGFFTWFVVLVFLGIAAYLIFGSWLNYNRYGARGWDLL PHGDAIREIPYLMKDWMRRVLNTVQGTGSRGGYSAV* |
| Coding | >Ophun1|4227 ATGCATCCGCCGCAATTATCGACGACGACGCTGGCTCTCGGCTTGGCCTTGGCGCCTCTGCAGGGCCTCGCCATG TTGAGATGTGAGAATGTCCGGGTTGATGGCCACAGCTTTGACCTTTCGCAATTGGGCGGGCCGCATTCTGTCGTC ACCTCGCGATACGAGTCGATCCCGGACGCTCATCACAACACCACCTACACGCTGGATATCTGCAAGCCGCTGAAG AAGAGCGGAACGGTCAAGAAGACGGAGGAGTGTCCCAACGGAACGAGAGTCTGCGCCATCCAGCGCTTTCTCCAG GGCGAGAAGAACGTCGTCGACAAGGTGGTGGCCATCGCCGGCTCGCTCGAGAATGTCGGCGGTTCGCAGTTCGAA TACGAGGCTACGCGACTCAAGACGAGTGACTCCAACAGCGACTCACAAAAGGAAGGCCTTAGACTCGTGCTCAAG GGCGGTAAGGATCCCCTCGTCGGGCCCGTGGGGGAGCGTCGCGAACAAAAAGCCATCGTCGAGTTCCTGTGCGAC CCCAATAAGAAAGGGGACGAAGGCGAGTGGGAGGCCGGCGACAAGTACGACAAGCGGTCCCCCGACGACGACAAG GGCAACGACGGCAAGGACCAGTCTGCCATCGAACACCAGCTCAAGAAGGAGGGCGCCGCTCTCGTCTGGGAGAGC TACGGTCGGGAGAAGGACGCTGACGTACTGCGGCTAACGTGGCATACCAAGTTTGCGTGCGAGAAGCGAGACGGC GGCAACAAGGACGGTGGTGGGAGCACCAGCAGCCACTGGGGTTTCTTCACCTGGTTTGTCGTTCTCGTCTTCCTC GGCATCGCCGCCTACCTCATCTTCGGATCGTGGCTCAACTACAACCGCTACGGCGCGAGGGGCTGGGATCTGCTT CCCCATGGTGACGCCATCCGCGAGATACCATATTTGATGAAGGACTGGATGAGGCGGGTGCTAAACACGGTGCAG GGTACTGGCAGTCGGGGAGGATACAGCGCAGTCTGA |
| Transcript | >Ophun1|4227 ATGCATCCGCCGCAATTATCGACGACGACGCTGGCTCTCGGCTTGGCCTTGGCGCCTCTGCAGGGCCTCGCCATG TTGAGATGTGAGAATGTCCGGGTTGATGGCCACAGCTTTGACCTTTCGCAATTGGGCGGGCCGCATTCTGTCGTC ACCTCGCGATACGAGTCGATCCCGGACGCTCATCACAACACCACCTACACGCTGGATATCTGCAAGCCGCTGAAG AAGAGCGGAACGGTCAAGAAGACGGAGGAGTGTCCCAACGGAACGAGAGTCTGCGCCATCCAGCGCTTTCTCCAG GGCGAGAAGAACGTCGTCGACAAGGTGGTGGCCATCGCCGGCTCGCTCGAGAATGTCGGCGGTTCGCAGTTCGAA TACGAGGCTACGCGACTCAAGACGAGTGACTCCAACAGCGACTCACAAAAGGAAGGCCTTAGACTCGTGCTCAAG GGCGGTAAGGATCCCCTCGTCGGGCCCGTGGGGGAGCGTCGCGAACAAAAAGCCATCGTCGAGTTCCTGTGCGAC CCCAATAAGAAAGGGGACGAAGGCGAGTGGGAGGCCGGCGACAAGTACGACAAGCGGTCCCCCGACGACGACAAG GGCAACGACGGCAAGGACCAGTCTGCCATCGAACACCAGCTCAAGAAGGAGGGCGCCGCTCTCGTCTGGGAGAGC TACGGTCGGGAGAAGGACGCTGACGTACTGCGGCTAACGTGGCATACCAAGTTTGCGTGCGAGAAGCGAGACGGC GGCAACAAGGACGGTGGTGGGAGCACCAGCAGCCACTGGGGTTTCTTCACCTGGTTTGTCGTTCTCGTCTTCCTC GGCATCGCCGCCTACCTCATCTTCGGATCGTGGCTCAACTACAACCGCTACGGCGCGAGGGGCTGGGATCTGCTT CCCCATGGTGACGCCATCCGCGAGATACCATATTTGATGAAGGACTGGATGAGGCGGGTGCTAAACACGGTGCAG GGTACTGGCAGTCGGGGAGGATACAGCGCAGTCTGA |
| Gene | >Ophun1|4227 ATGCATCCGCCGCAATTATCGACGACGACGCTGGCTCTCGGCTTGGCCTTGGCGCCTCTGCAGGGCCTCGCCATG TTGAGATGTGAGAATGTCCGGGTTGATGGCCACAGCTTTGACCTTTCGCAATTGGGCGGGCCGCATTCTGTCGTC ACCTCGCGATACGAGTCGATCCCGGACGCTCATCACAACACCACCTACACGCTGGATATCTGCAAGCCGCTGAAG AAGAGCGGAACGGTCAAGAAGACGGAGGAGTGTCCCAACGGAACGAGAGGTGAGCCATCCATCCTCTTGACCATC CTCTTGACCTGCCAGAGATGCTGACAGCCGCCCAGTCTGCGCCATCCAGCGCTTTCTCCAGGGCGAGAAGAACGT CGTCGACAAGGTGGTGGCCATCGCCGGCTCGCTCGAGAATGTCGGCGGTTCGCAGTTCGAATACGAGGCTACGCG ACTCAAGACGAGTGACTCCAACAGCGACTCACAAAAGGAAGGCCTTAGACTCGTGCTCAAGGGCGGTAAGGATCC CCTCGTCGGGCCCGTGGGGGAGCGTCGCGAACAAAAAGCCATCGTCGAGTTCCTGTGCGACCCCAATAAGAAAGG GGACGAAGGCGAGTGGGAGGCCGGCGACAAGTACGACAAGCGGTCCCCCGACGACGACAAGGGCAACGACGGCAA GGACCAGTCTGCCATCGAACACCAGCTCAAGAAGGAGGGCGCCGCTCTCGTCTGGGAGAGCTACGGTCGGGAGAA GGACGCTGACGTACTGCGGCTAACGTGGCATACCAAGTTTGCGTGCGAGAAGCGAGACGGCGGCAACAAGGACGG TGGTGGGAGCACCAGCAGCCACTGGGGTTTCTTCACCTGGTTTGTCGTTCTGTAAGTCTCTTTCTGCTGTTGAGC GCGTCCCGTCTTGCTAACGGCCTGGTCAGCGTCTTCCTCGGCATCGCCGCCTACCTCATCTTCGGATCGTGGCTC AACTACAACCGCTACGGCGCGAGGGGCTGGGATCTGCTTCCCCATGGTGACGCCATCCGCGAGATACCATATTTG ATGAAGGACTGGATGAGGCGGGTGCTAAACACGGTGCAGGGTACTGGCAGTCGGGGAGGATACAGCGCAGTCTGA |