Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|4218
Gene name
LocationContig_389:8269..9406
Strand-
Gene length (bp)1137
Transcript length (bp)1026
Coding sequence length (bp)1026
Protein length (aa) 342

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O94531|UFE1_SCHPO Syntaxin ufe1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufe1 PE=1 SV=1 12 341 1.0E-12
sp|Q8VDS8|STX18_MOUSE Syntaxin-18 OS=Mus musculus GN=Stx18 PE=1 SV=2 41 337 3.0E-12
sp|Q9P2W9|STX18_HUMAN Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1 41 337 2.0E-11
sp|Q5REB4|STX18_PONAB Syntaxin-18 OS=Pongo abelii GN=STX18 PE=2 SV=1 41 337 2.0E-11
sp|Q68FW4|STX18_RAT Syntaxin-18 OS=Rattus norvegicus GN=Stx18 PE=2 SV=1 41 337 2.0E-11
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94531|UFE1_SCHPO Syntaxin ufe1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufe1 PE=1 SV=1 12 341 1.0E-12
sp|Q8VDS8|STX18_MOUSE Syntaxin-18 OS=Mus musculus GN=Stx18 PE=1 SV=2 41 337 3.0E-12
sp|Q9P2W9|STX18_HUMAN Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1 41 337 2.0E-11
sp|Q5REB4|STX18_PONAB Syntaxin-18 OS=Pongo abelii GN=STX18 PE=2 SV=1 41 337 2.0E-11
sp|Q68FW4|STX18_RAT Syntaxin-18 OS=Rattus norvegicus GN=Stx18 PE=2 SV=1 41 337 2.0E-11
sp|Q4VBI7|STX18_DANRE Syntaxin-18 OS=Danio rerio GN=stx18 PE=2 SV=1 169 337 2.0E-10
sp|P41834|UFE1_YEAST Syntaxin UFE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFE1 PE=1 SV=2 235 340 7.0E-08
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 318 340 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|4218
MAHAILPSADLTPEFNALLSKHGAPSVAGRKSLDADALEGFLSEAYRINAHIARLHRELRDVRQAYLSTEQPRRT
LSRSATGQARVLTDSEREDVDANAKQMIRELNAGIRALDEAEQLRRETETAVIRGKYAGGLSILSNWASGGGPAA
AKSAEYVAAEARARHMDLHRDAILWFLRQRLEMCCRTQQDMMETRLTRELEKSRVLLPPSLAEFSAPSPLATQMA
ADEAVAPRGLTAEQIQMFEEDNQDMMKHYESKLDKVRTAEKSLLEISELQSMLVNNLATQSAHIEQLVADSVSTT
DNVGGGNKQLKKATERRSTARYTFFAAGGLCAFLIVWDLLI*
Coding >Ophun1|4218
ATGGCGCACGCCATCTTGCCGTCGGCCGATCTGACCCCCGAGTTCAATGCTCTGCTCAGCAAGCATGGAGCTCCT
TCTGTCGCTGGGAGGAAGAGTCTCGATGCTGACGCGCTCGAGGGCTTCCTCAGCGAGGCCTACCGCATCAACGCG
CACATCGCCCGTCTGCATCGCGAGCTGAGAGATGTCAGACAGGCCTACTTGTCGACGGAGCAACCGCGTCGGACT
TTGAGCCGTTCGGCCACCGGCCAGGCGCGGGTGCTGACGGATAGCGAGCGCGAGGACGTCGACGCCAATGCCAAG
CAGATGATTCGCGAGCTCAACGCGGGGATACGCGCCCTCGATGAGGCAGAGCAGCTTCGCCGCGAGACGGAAACC
GCCGTCATCCGCGGCAAATACGCCGGCGGGCTCAGCATCCTTAGCAACTGGGCGTCCGGGGGAGGTCCGGCTGCT
GCCAAGTCGGCCGAGTATGTGGCGGCTGAGGCTCGCGCGCGACACATGGATCTTCATCGCGATGCTATTCTCTGG
TTCTTGCGACAGCGACTTGAGATGTGCTGTCGCACTCAGCAGGACATGATGGAGACGAGACTGACGCGAGAATTG
GAAAAGTCGCGCGTCCTCTTGCCGCCCTCTCTAGCCGAATTTTCTGCGCCGTCGCCACTAGCGACACAGATGGCA
GCAGACGAAGCTGTGGCGCCACGGGGTCTGACGGCGGAGCAGATCCAAATGTTTGAAGAGGACAATCAAGACATG
ATGAAGCACTACGAGAGCAAGCTGGACAAAGTCAGAACGGCGGAAAAGTCGCTTCTCGAGATATCCGAGCTACAG
TCGATGCTGGTGAATAACCTGGCAACACAGTCGGCGCACATCGAGCAGCTCGTCGCCGACTCGGTCTCGACAACA
GACAACGTCGGCGGCGGAAACAAGCAGCTCAAGAAAGCGACGGAGCGGCGCAGCACGGCTCGCTACACCTTTTTC
GCGGCCGGTGGACTTTGCGCCTTTTTGATCGTCTGGGACCTGCTCATCTGA
Transcript >Ophun1|4218
ATGGCGCACGCCATCTTGCCGTCGGCCGATCTGACCCCCGAGTTCAATGCTCTGCTCAGCAAGCATGGAGCTCCT
TCTGTCGCTGGGAGGAAGAGTCTCGATGCTGACGCGCTCGAGGGCTTCCTCAGCGAGGCCTACCGCATCAACGCG
CACATCGCCCGTCTGCATCGCGAGCTGAGAGATGTCAGACAGGCCTACTTGTCGACGGAGCAACCGCGTCGGACT
TTGAGCCGTTCGGCCACCGGCCAGGCGCGGGTGCTGACGGATAGCGAGCGCGAGGACGTCGACGCCAATGCCAAG
CAGATGATTCGCGAGCTCAACGCGGGGATACGCGCCCTCGATGAGGCAGAGCAGCTTCGCCGCGAGACGGAAACC
GCCGTCATCCGCGGCAAATACGCCGGCGGGCTCAGCATCCTTAGCAACTGGGCGTCCGGGGGAGGTCCGGCTGCT
GCCAAGTCGGCCGAGTATGTGGCGGCTGAGGCTCGCGCGCGACACATGGATCTTCATCGCGATGCTATTCTCTGG
TTCTTGCGACAGCGACTTGAGATGTGCTGTCGCACTCAGCAGGACATGATGGAGACGAGACTGACGCGAGAATTG
GAAAAGTCGCGCGTCCTCTTGCCGCCCTCTCTAGCCGAATTTTCTGCGCCGTCGCCACTAGCGACACAGATGGCA
GCAGACGAAGCTGTGGCGCCACGGGGTCTGACGGCGGAGCAGATCCAAATGTTTGAAGAGGACAATCAAGACATG
ATGAAGCACTACGAGAGCAAGCTGGACAAAGTCAGAACGGCGGAAAAGTCGCTTCTCGAGATATCCGAGCTACAG
TCGATGCTGGTGAATAACCTGGCAACACAGTCGGCGCACATCGAGCAGCTCGTCGCCGACTCGGTCTCGACAACA
GACAACGTCGGCGGCGGAAACAAGCAGCTCAAGAAAGCGACGGAGCGGCGCAGCACGGCTCGCTACACCTTTTTC
GCGGCCGGTGGACTTTGCGCCTTTTTGATCGTCTGGGACCTGCTCATCTGA
Gene >Ophun1|4218
ATGGCGCACGCCATCTTGCCGTCGGCCGATCTGACCCCCGAGTTCAATGCTCTGCTCAGCAAGCATGGAGCTCCT
TCTGTCGCTGGGAGGAAGAGTCTCGATGCTGACGCGCTCGAGGGCTTCCTCAGCGAGGCCTACCGCATCGTGAGT
CCGTCGTCTCATCTGGCCTTGTTCGTCTGCTAACACGTCACGAGTCTAGAACGCGCACATCGCCCGTCTGCATCG
CGAGCTGAGAGATGTCAGACAGGCCTACTTGTCGACGGAGCAACCGCGTCGGACTTTGAGCCGTTCGGCCACCGG
CCAGGCGCGGGTGCTGACGGATAGCGAGCGCGAGGACGTCGACGCCAATGCCAAGCAGATGATTCGCGAGCTCAA
CGCGGGGATACGCGCCCTCGATGAGGCAGAGCAGCTTCGCCGCGAGACGGAAACCGCCGTCATCCGCGGCAAATA
CGCCGGCGGGCTCAGCATCCTTAGCAACTGGGCGTCCGGGGGAGGTCCGGCTGCTGCCAAGTCGGCCGAGTATGT
GGCGGCTGAGGCTCGCGCGCGACACATGGATCTTCATCGCGATGCTATTCTCTGGTTCTTGCGACAGCGACTTGA
GATGTGCTGTCGCACTCAGCAGGACATGATGGAGACGAGACTGACGCGAGAATTGGAAAAGTCGCGCGTCCTCTT
GCCGCCCTCTCTAGCCGAATTTTCTGCGCCGTCGCCACTAGCGACACAGATGGCAGCAGACGAAGCTGTGGCGCC
ACGGGGTCTGACGGCGGAGCAGATCCAAATGTTTGAAGAGGACAATCAAGACATGATGAAGCACTACGAGAGCAA
GCTGGACAAAGTCAGGTACGAGATGAATATTCGAATGCTCAGACCCGTTGCAAAAGCTGACGGTCCGACAGAACG
GCGGAAAAGTCGCTTCTCGAGATATCCGAGCTACAGTCGATGCTGGTGAATAACCTGGCAACACAGTCGGCGCAC
ATCGAGCAGCTCGTCGCCGACTCGGTCTCGACAACAGACAACGTCGGCGGCGGAAACAAGCAGCTCAAGAAAGCG
ACGGAGCGGCGCAGCACGGCTCGCTACACCTTTTTCGCGGCCGGTGGACTTTGCGCCTTTTTGATCGTCTGGGAC
CTGCTCATCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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