© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|4197 |
| Gene name | |
| Location | Contig_386:4342..5135 |
| Strand | - |
| Gene length (bp) | 793 |
| Transcript length (bp) | 681 |
| Coding sequence length (bp) | 681 |
| Protein length (aa) | 227 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05837 | CENP-H | Centromere protein H (CENP-H) | 1.6E-28 | 100 | 218 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000776 | kinetochore | Yes |
| GO:0051382 | kinetochore assembly | Yes |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0009987 | cellular process | No |
| GO:0140694 | non-membrane-bounded organelle assembly | No |
| GO:0051383 | kinetochore organization | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0022607 | cellular component assembly | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0043229 | intracellular organelle | No |
| GO:0099080 | supramolecular complex | No |
| GO:0043226 | organelle | No |
| GO:0070925 | organelle assembly | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0051276 | chromosome organization | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0006996 | organelle organization | No |
| GO:0016043 | cellular component organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4197 MDKVDEEPQPQTALSLSSDEQRVLDLFDTIQQLRIEMAIVRALQTGNSGASEPLRDDLLEARAKLKLRNDAIEAV MMANPILRAVHNGTDASPIERHADLLPFVERRDEAAVAVAGQASDMESIRSQLTVIHSETVRVTRHNVELTAELC DLADQLRRRKVGSGLGSPGTRSAVTQLEQQVANRRKRWRAIKGVVSGVVCGSGIDWADDDELRGMVLDPEDEDER L* |
| Coding | >Ophun1|4197 ATGGACAAGGTCGACGAAGAGCCCCAGCCACAGACGGCTCTGTCTTTGTCTTCGGACGAGCAGCGAGTCCTCGAT CTCTTCGACACGATACAGCAGCTGAGAATCGAGATGGCCATCGTCAGGGCGCTGCAAACAGGGAACTCGGGCGCG TCAGAACCACTGCGGGATGATCTCCTCGAAGCGCGGGCCAAGCTCAAGCTGCGCAACGACGCCATCGAGGCCGTC ATGATGGCCAACCCGATCCTCAGGGCCGTCCACAACGGCACCGACGCGTCTCCCATAGAACGGCACGCAGATTTG CTTCCCTTTGTGGAGCGTAGGGATGAGGCTGCCGTCGCCGTCGCCGGACAGGCCTCAGACATGGAGTCGATCCGC AGCCAGCTGACCGTCATTCATTCGGAAACGGTGCGCGTCACTCGTCACAACGTCGAGCTTACAGCCGAGCTCTGC GACTTGGCGGATCAGTTGCGACGGCGGAAAGTCGGGTCCGGCCTCGGCTCGCCGGGGACGCGCAGTGCCGTCACG CAGCTCGAGCAGCAGGTCGCGAACCGCAGGAAGCGATGGAGGGCCATCAAGGGCGTCGTCAGCGGTGTCGTCTGC GGGAGCGGTATCGACTGGGCTGACGACGACGAGCTGCGCGGAATGGTGCTCGATCCCGAAGACGAAGACGAACGA CTGTGA |
| Transcript | >Ophun1|4197 ATGGACAAGGTCGACGAAGAGCCCCAGCCACAGACGGCTCTGTCTTTGTCTTCGGACGAGCAGCGAGTCCTCGAT CTCTTCGACACGATACAGCAGCTGAGAATCGAGATGGCCATCGTCAGGGCGCTGCAAACAGGGAACTCGGGCGCG TCAGAACCACTGCGGGATGATCTCCTCGAAGCGCGGGCCAAGCTCAAGCTGCGCAACGACGCCATCGAGGCCGTC ATGATGGCCAACCCGATCCTCAGGGCCGTCCACAACGGCACCGACGCGTCTCCCATAGAACGGCACGCAGATTTG CTTCCCTTTGTGGAGCGTAGGGATGAGGCTGCCGTCGCCGTCGCCGGACAGGCCTCAGACATGGAGTCGATCCGC AGCCAGCTGACCGTCATTCATTCGGAAACGGTGCGCGTCACTCGTCACAACGTCGAGCTTACAGCCGAGCTCTGC GACTTGGCGGATCAGTTGCGACGGCGGAAAGTCGGGTCCGGCCTCGGCTCGCCGGGGACGCGCAGTGCCGTCACG CAGCTCGAGCAGCAGGTCGCGAACCGCAGGAAGCGATGGAGGGCCATCAAGGGCGTCGTCAGCGGTGTCGTCTGC GGGAGCGGTATCGACTGGGCTGACGACGACGAGCTGCGCGGAATGGTGCTCGATCCCGAAGACGAAGACGAACGA CTGTGA |
| Gene | >Ophun1|4197 ATGGACAAGGTCGACGAAGAGCCCCAGCCACAGACGGCTCTGTCTTTGTCTTCGGACGAGCAGCGAGTCCTCGAT CTCTTCGACACGATACAGCAGCTGAGAATCGAGATGGCCATCGTCAGGGCGCTGCAAACAGGTGCGATATGCCAG ACGAGCAACGCCGGGCCCGAACCGCACTGAATCTCGGCTTTCGTGTCAGGGAACTCGGGCGCGTCAGAACCACTG CGGGATGATCTCCTCGAAGCGCGGGCCAAGCTCAAGCTGCGCAACGACGCCATCGAGGCCGTCATGATGGCCAAC CCGATCCTCAGGGCCGTCCACAACGGCACCGACGCGTCTCCCATAGAACGGCACGCGTGTCTCTCGATGAAAACG CGCTCCAAGTTCTAACGCTGCTATATATAGAGATTTGCTTCCCTTTGTGGAGCGTAGGGATGAGGCTGCCGTCGC CGTCGCCGGACAGGCCTCAGACATGGAGTCGATCCGCAGCCAGCTGACCGTCATTCATTCGGAAACGGTGCGCGT CACTCGTCACAACGTCGAGCTTACAGCCGAGCTCTGCGACTTGGCGGATCAGTTGCGACGGCGGAAAGTCGGGTC CGGCCTCGGCTCGCCGGGGACGCGCAGTGCCGTCACGCAGCTCGAGCAGCAGGTCGCGAACCGCAGGAAGCGATG GAGGGCCATCAAGGGCGTCGTCAGCGGTGTCGTCTGCGGGAGCGGTATCGACTGGGCTGACGACGACGAGCTGCG CGGAATGGTGCTCGATCCCGAAGACGAAGACGAACGACTGTGA |