© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|4163 |
| Gene name | |
| Location | Contig_381:3766..5960 |
| Strand | - |
| Gene length (bp) | 2194 |
| Transcript length (bp) | 1962 |
| Coding sequence length (bp) | 1962 |
| Protein length (aa) | 654 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04049 | ANAPC8 | Anaphase promoting complex subunit 8 / Cdc23 | 2.3E-36 | 21 | 169 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 1.5E-02 | 361 | 393 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 6.5E-05 | 395 | 425 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 7.3E-02 | 520 | 545 |
| PF13414 | TPR_11 | TPR repeat | 1.2E-06 | 401 | 440 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94556|APC8_SCHPO | Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2 | 18 | 643 | 1.0E-128 |
| sp|P16522|CDC23_YEAST | Anaphase-promoting complex subunit CDC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC23 PE=1 SV=1 | 60 | 639 | 5.0E-100 |
| sp|Q8BGZ4|CDC23_MOUSE | Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2 | 51 | 638 | 4.0E-83 |
| sp|A1A4R8|CDC23_BOVIN | Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1 | 51 | 638 | 2.0E-82 |
| sp|Q9STS3|CDC23_ARATH | Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1 | 46 | 639 | 5.0E-82 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94556|APC8_SCHPO | Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2 | 18 | 643 | 1.0E-128 |
| sp|P16522|CDC23_YEAST | Anaphase-promoting complex subunit CDC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC23 PE=1 SV=1 | 60 | 639 | 5.0E-100 |
| sp|Q8BGZ4|CDC23_MOUSE | Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2 | 51 | 638 | 4.0E-83 |
| sp|A1A4R8|CDC23_BOVIN | Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1 | 51 | 638 | 2.0E-82 |
| sp|Q9STS3|CDC23_ARATH | Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1 | 46 | 639 | 5.0E-82 |
| sp|Q9UJX2|CDC23_HUMAN | Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3 | 51 | 638 | 5.0E-82 |
| sp|Q86B11|CDC23_DICDI | Anaphase-promoting complex subunit 8 OS=Dictyostelium discoideum GN=anapc8 PE=3 SV=1 | 196 | 488 | 3.0E-76 |
| sp|Q19294|CDC23_CAEEL | Cell division cycle protein 23 homolog OS=Caenorhabditis elegans GN=mat-3 PE=1 SV=2 | 182 | 490 | 6.0E-36 |
| sp|P17885|BIMA_EMENI | Protein bimA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bimA PE=2 SV=1 | 311 | 488 | 3.0E-26 |
| sp|Q06AN9|CD27A_ARATH | Cell division cycle protein 27 homolog A OS=Arabidopsis thaliana GN=CDC27A PE=1 SV=2 | 303 | 493 | 5.0E-26 |
| sp|Q8LGU6|CD27B_ARATH | Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1 | 258 | 492 | 1.0E-25 |
| sp|Q54J83|APC3_DICDI | Anaphase-promoting complex subunit 3 OS=Dictyostelium discoideum GN=anapc3 PE=3 SV=1 | 302 | 489 | 5.0E-24 |
| sp|A7Z061|CDC27_BOVIN | Cell division cycle protein 27 homolog OS=Bos taurus GN=CDC27 PE=2 SV=1 | 303 | 492 | 2.0E-23 |
| sp|P30260|CDC27_HUMAN | Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27 PE=1 SV=2 | 303 | 492 | 2.0E-23 |
| sp|A2A6Q5|CDC27_MOUSE | Cell division cycle protein 27 homolog OS=Mus musculus GN=Cdc27 PE=1 SV=1 | 303 | 492 | 3.0E-23 |
| sp|Q4V8A2|CDC27_RAT | Cell division cycle protein 27 homolog OS=Rattus norvegicus GN=Cdc27 PE=2 SV=1 | 303 | 492 | 3.0E-23 |
| sp|P10505|APC3_SCHPO | Anaphase-promoting complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nuc2 PE=1 SV=3 | 291 | 513 | 3.0E-18 |
| sp|P38042|CDC27_YEAST | Anaphase-promoting complex subunit CDC27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC27 PE=1 SV=2 | 313 | 483 | 2.0E-16 |
| sp|Q9N593|CDC27_CAEEL | Cell division cycle protein 27 homolog OS=Caenorhabditis elegans GN=mat-1 PE=1 SV=1 | 345 | 489 | 2.0E-14 |
| sp|Q9FMA3|PEX5_ARATH | Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1 | 346 | 465 | 6.0E-08 |
| sp|Q3UV71|TMTC1_MOUSE | Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=2 | 261 | 483 | 3.0E-06 |
| sp|O60184|CYC8_SCHPO | General transcriptional corepressor ssn6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1 | 371 | 488 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0030071 | regulation of mitotic metaphase/anaphase transition | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0010965 | regulation of mitotic sister chromatid separation | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0051983 | regulation of chromosome segregation | No |
| GO:0051128 | regulation of cellular component organization | No |
| GO:1901990 | regulation of mitotic cell cycle phase transition | No |
| GO:0033045 | regulation of sister chromatid segregation | No |
| GO:1902494 | catalytic complex | No |
| GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | No |
| GO:0033044 | regulation of chromosome organization | No |
| GO:1905818 | regulation of chromosome separation | No |
| GO:0010564 | regulation of cell cycle process | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:1901987 | regulation of cell cycle phase transition | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0051726 | regulation of cell cycle | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0007346 | regulation of mitotic cell cycle | No |
| GO:0005488 | binding | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0008150 | biological_process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0033043 | regulation of organelle organization | No |
| GO:0065007 | biological regulation | No |
| GO:1990234 | transferase complex | No |
| GO:0050789 | regulation of biological process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4163 MAHSVLEVGHLRAALQDAVIQAAELLNALPEADGADQDAHGPDVSASNQFPDEAAMEAREHHRYLLAKSFFDCKE YDRCAAVFLPEPILSSALASRSDVPAASSSRRAKGKGKATASRRGPAVAFLPKISQKSLFLALYAKLISGEKRKN EESEMVMGPQDLGTVVNKELLVIGRYLAAWFEERTVEDDEVVGSHGWLEYLYGMVLAKEKNDAKAMEFLVRSVHK FPMNWGCWLEMTSLVSRVDELNRILKHCPQNIMSFIFHVHTSLELYQQSPSLANSLEQLLSIFPKSAFLLTCNAL LAYHAKDLMAAEQHFSRIVALHPHRLDSLDNYSNILYVLNLRPKLAFVAHLCSSVDKFRPESCVVIGNYYSLLSM HDKAVQHFRRALTLDRSCLSAWTLMGHEYVELKNTHAAIESYRRAVDVNRRDYRAWYGLGQTYEMLEMHTYSLWY YKKAAGLRPWDGKMWLAVGSCLHKMGRERDGIKALKRALLADAYYDSGSSFGSGGDLVGARGAAGHMDPDILLQI AVMYDQLDEEDEAKAYMELCMAQEDGGSAAAAGGANESTMKHNESSAGSDDDPDRQEGQGEGTGVTAATSKARMW LARYAMRTEDYTTANRLATELCHDGVEVEEAKALVREIRSILDSAGGVYGSAS* |
| Coding | >Ophun1|4163 ATGGCGCACAGTGTTCTCGAGGTCGGCCATCTCCGGGCGGCGCTGCAGGATGCCGTTATCCAGGCTGCCGAGCTT CTCAACGCCTTGCCCGAGGCAGACGGCGCTGATCAAGATGCCCATGGTCCAGACGTCTCCGCCTCCAACCAGTTT CCGGACGAGGCCGCCATGGAGGCACGAGAGCACCACCGATACCTGCTTGCAAAGTCCTTCTTCGATTGCAAAGAG TACGACCGCTGCGCCGCCGTCTTCCTTCCCGAACCCATTCTCTCCTCTGCCCTGGCCTCGCGCTCCGATGTGCCC GCCGCATCATCGTCCCGACGGGCCAAAGGCAAAGGAAAGGCGACGGCCTCGAGACGCGGTCCGGCCGTAGCTTTT TTACCCAAAATCAGCCAGAAAAGTCTCTTTCTTGCCCTATACGCCAAGCTCATTTCGGGCGAGAAGCGGAAGAAC GAGGAGTCGGAAATGGTCATGGGCCCTCAGGACCTCGGCACCGTCGTCAACAAGGAACTGCTCGTCATCGGACGC TACCTGGCGGCATGGTTCGAAGAACGGACGGTGGAAGATGACGAGGTCGTCGGCAGTCATGGCTGGCTCGAGTAT CTATACGGCATGGTCTTGGCCAAGGAGAAGAACGACGCCAAGGCCATGGAGTTTCTCGTCCGCAGCGTTCACAAG TTCCCCATGAATTGGGGCTGCTGGCTGGAGATGACGTCTCTCGTCTCCCGAGTCGATGAGCTCAACCGCATCTTG AAGCATTGCCCGCAAAACATCATGTCGTTCATATTCCATGTCCACACCTCTCTGGAGTTGTATCAGCAGTCCCCT AGCCTTGCCAACAGCCTCGAGCAGCTGCTTTCCATCTTTCCCAAGTCAGCTTTTCTCCTCACTTGCAACGCCCTG TTGGCGTACCACGCCAAAGACTTGATGGCCGCCGAGCAGCATTTCAGCCGCATCGTCGCTCTCCACCCGCATCGA CTAGACTCCCTCGACAACTACTCCAATATACTCTATGTTCTAAACTTGCGGCCCAAGTTGGCCTTTGTCGCCCAC CTCTGCTCCAGCGTTGACAAGTTTCGGCCCGAGTCTTGCGTGGTGATAGGCAACTACTATTCTCTCCTATCGATG CACGATAAGGCAGTGCAACACTTTCGGAGGGCATTGACATTGGACAGATCTTGTCTCTCGGCATGGACCTTGATG GGGCACGAGTACGTCGAGCTCAAGAACACGCACGCGGCCATCGAGTCGTACCGACGAGCCGTTGACGTTAACCGG CGTGACTATCGTGCCTGGTACGGCCTCGGCCAGACGTACGAGATGCTCGAGATGCACACCTATTCGCTGTGGTAC TACAAGAAAGCTGCTGGTCTGAGGCCGTGGGACGGCAAGATGTGGCTGGCCGTAGGCTCGTGTCTGCACAAGATG GGCCGGGAACGGGACGGCATCAAGGCCCTCAAGCGAGCCCTGCTGGCCGACGCCTATTACGACTCGGGGAGCAGC TTCGGCAGCGGAGGCGACCTCGTCGGCGCCCGTGGAGCTGCCGGCCACATGGACCCGGACATCCTACTGCAGATC GCCGTTATGTACGACCAGCTGGACGAGGAGGACGAGGCCAAGGCTTACATGGAGCTCTGCATGGCCCAAGAGGAT GGCGGGTCAGCGGCAGCGGCTGGTGGCGCGAATGAGTCGACGATGAAGCACAACGAGTCTTCAGCCGGCTCCGAC GACGATCCGGACCGGCAAGAGGGTCAAGGCGAGGGCACGGGCGTGACGGCCGCGACCAGCAAGGCTCGCATGTGG CTGGCCAGATACGCCATGCGCACAGAAGACTACACCACCGCCAATCGGCTCGCCACGGAGCTGTGTCACGACGGA GTCGAGGTCGAGGAGGCCAAGGCCCTGGTGCGGGAGATCAGATCTATCCTGGACTCTGCCGGGGGCGTCTACGGC TCTGCCAGCTAG |
| Transcript | >Ophun1|4163 ATGGCGCACAGTGTTCTCGAGGTCGGCCATCTCCGGGCGGCGCTGCAGGATGCCGTTATCCAGGCTGCCGAGCTT CTCAACGCCTTGCCCGAGGCAGACGGCGCTGATCAAGATGCCCATGGTCCAGACGTCTCCGCCTCCAACCAGTTT CCGGACGAGGCCGCCATGGAGGCACGAGAGCACCACCGATACCTGCTTGCAAAGTCCTTCTTCGATTGCAAAGAG TACGACCGCTGCGCCGCCGTCTTCCTTCCCGAACCCATTCTCTCCTCTGCCCTGGCCTCGCGCTCCGATGTGCCC GCCGCATCATCGTCCCGACGGGCCAAAGGCAAAGGAAAGGCGACGGCCTCGAGACGCGGTCCGGCCGTAGCTTTT TTACCCAAAATCAGCCAGAAAAGTCTCTTTCTTGCCCTATACGCCAAGCTCATTTCGGGCGAGAAGCGGAAGAAC GAGGAGTCGGAAATGGTCATGGGCCCTCAGGACCTCGGCACCGTCGTCAACAAGGAACTGCTCGTCATCGGACGC TACCTGGCGGCATGGTTCGAAGAACGGACGGTGGAAGATGACGAGGTCGTCGGCAGTCATGGCTGGCTCGAGTAT CTATACGGCATGGTCTTGGCCAAGGAGAAGAACGACGCCAAGGCCATGGAGTTTCTCGTCCGCAGCGTTCACAAG TTCCCCATGAATTGGGGCTGCTGGCTGGAGATGACGTCTCTCGTCTCCCGAGTCGATGAGCTCAACCGCATCTTG AAGCATTGCCCGCAAAACATCATGTCGTTCATATTCCATGTCCACACCTCTCTGGAGTTGTATCAGCAGTCCCCT AGCCTTGCCAACAGCCTCGAGCAGCTGCTTTCCATCTTTCCCAAGTCAGCTTTTCTCCTCACTTGCAACGCCCTG TTGGCGTACCACGCCAAAGACTTGATGGCCGCCGAGCAGCATTTCAGCCGCATCGTCGCTCTCCACCCGCATCGA CTAGACTCCCTCGACAACTACTCCAATATACTCTATGTTCTAAACTTGCGGCCCAAGTTGGCCTTTGTCGCCCAC CTCTGCTCCAGCGTTGACAAGTTTCGGCCCGAGTCTTGCGTGGTGATAGGCAACTACTATTCTCTCCTATCGATG CACGATAAGGCAGTGCAACACTTTCGGAGGGCATTGACATTGGACAGATCTTGTCTCTCGGCATGGACCTTGATG GGGCACGAGTACGTCGAGCTCAAGAACACGCACGCGGCCATCGAGTCGTACCGACGAGCCGTTGACGTTAACCGG CGTGACTATCGTGCCTGGTACGGCCTCGGCCAGACGTACGAGATGCTCGAGATGCACACCTATTCGCTGTGGTAC TACAAGAAAGCTGCTGGTCTGAGGCCGTGGGACGGCAAGATGTGGCTGGCCGTAGGCTCGTGTCTGCACAAGATG GGCCGGGAACGGGACGGCATCAAGGCCCTCAAGCGAGCCCTGCTGGCCGACGCCTATTACGACTCGGGGAGCAGC TTCGGCAGCGGAGGCGACCTCGTCGGCGCCCGTGGAGCTGCCGGCCACATGGACCCGGACATCCTACTGCAGATC GCCGTTATGTACGACCAGCTGGACGAGGAGGACGAGGCCAAGGCTTACATGGAGCTCTGCATGGCCCAAGAGGAT GGCGGGTCAGCGGCAGCGGCTGGTGGCGCGAATGAGTCGACGATGAAGCACAACGAGTCTTCAGCCGGCTCCGAC GACGATCCGGACCGGCAAGAGGGTCAAGGCGAGGGCACGGGCGTGACGGCCGCGACCAGCAAGGCTCGCATGTGG CTGGCCAGATACGCCATGCGCACAGAAGACTACACCACCGCCAATCGGCTCGCCACGGAGCTGTGTCACGACGGA GTCGAGGTCGAGGAGGCCAAGGCCCTGGTGCGGGAGATCAGATCTATCCTGGACTCTGCCGGGGGCGTCTACGGC TCTGCCAGCTAG |
| Gene | >Ophun1|4163 ATGGCGCACAGTGTTCTCGAGGTCGGCCATCTCCGGGCGGCGCTGCAGGATGCCGTTATCCAGTGCTCAGAGAGA TGTCTCTACCAGTCGGCCAAATGGTAGCCTCTTCCTGCTGGCGGCTACTCGCCTCTGCCTGCTCATGGCCTGGCG ATGATGTTCTCTTGCTGATGACCTGAACCGTAGGGCTGCCGAGCTTCTCAACGCCTTGCCCGAGGCAGACGGCGC TGATCAAGATGCCCATGGTCCAGACGTCTCCGCCTCCAACCAGTTTCCGGACGAGGCCGCCATGGAGGCACGAGA GCACCACCGATACCTGCTTGCAAAGTCCTTCTTCGATTGCAAAGAGTACGACCGCTGCGCCGCCGTCTTCCTTCC CGAACCCATTCTCTCCTCTGCCCTGGCCTCGCGCTCCGATGTGCCCGCCGCATCATCGTCCCGACGGGCCAAAGG CAAAGGAAAGGCGACGGCCTCGAGACGCGGTCCGGCCGTAGCTTTTTTACCCAAAATCAGCCAGAAAAGTCTCTT TCTTGCCCTATACGCCAAGCTCATTTCGGGCGAGAAGCGGAAGAACGAGGAGTCGGAAATGGTCATGGGCCCTCA GGACCTCGGCACCGTCGTCAACAAGGAACTGCTCGTCATCGGACGCTACCTGGCGGCATGGTTCGAAGAACGGAC GGTGGAAGATGACGAGGTCGTCGGCAGTCATGGCTGGCTCGAGTATCTGTACGTGCTCGCCACGCACCCCGGCGG CTGGCGGCTGACCTGTCTCGACGCAGATACGGCATGGTCTTGGCCAAGGAGAAGAACGACGCCAAGGCCATGGAG TTTCTCGTCCGCAGCGTTCACAAGTTCCCCATGAATTGGGGCTGCTGGCTGGAGATGACGTCTCTCGTCTCCCGA GTCGATGAGGTTCGTCCAGACCGGATAGGGATGCTCGACTGGACCGCTGACGGTAGCATGACGGCAGCTCAACCG CATCTTGAAGCATTGCCCGCAAAACATCATGTCGTTCATATTCCATGTCCACACCTCTCTGGAGTTGTATCAGCA GTCCCCTAGCCTTGCCAACAGCCTCGAGCAGCTGCTTTCCATCTTTCCCAAGTCAGCTTTTCTCCTCACTTGCAA CGCCCTGTTGGCGTACCACGCCAAAGACTTGATGGCCGCCGAGCAGCATTTCAGCCGCATCGTCGCTCTCCACCC GCATCGACTAGACTCCCTCGACAACTACTCCAATATACTCTATGTTCTAAACTTGCGGCCCAAGTTGGCCTTTGT CGCCCACCTCTGCTCCAGCGTTGACAAGTTTCGGCCCGAGTCTTGCGTGGTGATAGGCAACTACTATTCTCTCCT ATCGATGCACGATAAGGCAGTGCAACACTTTCGGAGGGCATTGACATTGGACAGATCTTGTCTCTCGGCATGGAC CTTGATGGGGCACGAGTACGTCGAGCTCAAGAACACGCACGCGGCCATCGAGTCGTACCGACGAGCCGTTGACGT TAACCGGCGTGACTATCGTGCCTGGTACGGCCTCGGCCAGACGTACGAGATGCTCGAGATGCACACCTATTCGCT GTGGTACTACAAGAAAGCTGCTGGTCTGAGGCCGTGGGACGGCAAGATGTGGCTGGCCGTAGGCTCGTGTCTGCA CAAGATGGGCCGGGAACGGGACGGCATCAAGGCCCTCAAGCGAGCCCTGCTGGCCGACGCCTATTACGACTCGGG GAGCAGCTTCGGCAGCGGAGGCGACCTCGTCGGCGCCCGTGGAGCTGCCGGCCACATGGACCCGGACATCCTACT GCAGATCGCCGTTATGTACGACCAGCTGGACGAGGAGGACGAGGCCAAGGCTTACATGGAGCTCTGCATGGCCCA AGAGGATGGCGGGTCAGCGGCAGCGGCTGGTGGCGCGAATGAGTCGACGATGAAGCACAACGAGTCTTCAGCCGG CTCCGACGACGATCCGGACCGGCAAGAGGGTCAAGGCGAGGGCACGGGCGTGACGGCCGCGACCAGCAAGGCTCG CATGTGGCTGGCCAGATACGCCATGCGCACAGAAGACTACACCACCGCCAATCGGCTCGCCACGGAGCTGTGTCA CGACGGAGTCGAGGTCGAGGAGGCCAAGGCCCTGGTGCGGGAGATCAGATCTATCCTGGACTCTGCCGGGGGCGT CTACGGCTCTGCCAGCTAG |