Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophun1\|4112
Gene name
Location	Contig_377:10067..10904
Strand	-
Gene length (bp)	837
Transcript length (bp)	837
Coding sequence length (bp)	837
Protein length (aa)	279

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13373	Dsc3_C	DSC E3 ubiquitin ligase complex subunit 3, C-terminal domain	3.3E-31	150	272
PF10302	Dsc3_N	DSC E3 ubiquitin ligase complex subunit 3, ubiquitin-like domain	1.8E-25	13	110

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9HE10\|DSC3_SCHPO	DSC E3 ubiquitin ligase complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc3 PE=1 SV=1	13	271	2.0E-23
sp\|Q12015\|YO223_YEAST	Transmembrane protein YOR223W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR223W PE=1 SV=1	14	274	1.0E-12

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	225	247	22
2	254	271	17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophun1\|4112 MTDPPPPASGPLHLTIRFSSSIPDLDLDIASPERTTVLSLKHLLRSRIDSRSRLRLIYQGHILPDPCALSAVLRP LPSAQQDDDNHAGATKGKAVAALLRIYVNCSIGDELSEEDLAAEEAAAHDPPADVEPGSGAGSSGRQPRKRPRPR GFDRFLQAGFTASEISTLRAQFTLIQSSRFLPDSMPSPDSMRSLEDAWIDSNAGPMPTTAAMMEDDGSIASYVDI LIRGLAIGFFFPLGSFTWLLRGDVWNDKWRVFVAFGVILSVATGVVKGISEQR*
Coding	>Ophun1\|4112 ATGACGGACCCCCCGCCACCAGCCTCAGGCCCCCTCCACCTAACCATCCGCTTCTCCTCGTCCATCCCCGACCTC GACCTCGACATCGCATCCCCAGAGCGCACCACCGTCCTCTCCCTCAAGCATCTCCTCCGCTCCCGCATCGACTCC CGCAGCCGTCTGCGCCTCATCTACCAGGGCCACATCCTTCCCGATCCGTGCGCCCTCAGCGCCGTCCTCAGGCCC CTGCCCTCGGCGCAGCAAGACGACGACAATCATGCGGGAGCCACCAAGGGAAAGGCCGTCGCCGCGCTGCTCCGC ATCTACGTGAACTGCTCCATCGGCGATGAGCTCTCGGAAGAGGACCTCGCCGCCGAGGAGGCTGCCGCCCATGAC CCTCCCGCCGACGTCGAACCCGGCTCCGGCGCTGGTAGCTCCGGCCGTCAGCCCCGGAAGCGCCCCCGTCCCCGA GGCTTCGACCGCTTCCTCCAAGCCGGCTTCACGGCATCCGAGATCTCGACGCTACGTGCCCAGTTCACCCTCATC CAGTCCAGCCGCTTCCTCCCCGACTCCATGCCCTCTCCCGACTCCATGCGCAGCCTCGAAGATGCCTGGATAGAC TCCAACGCGGGGCCCATGCCGACGACGGCGGCCATGATGGAAGACGACGGTAGCATTGCTTCTTACGTGGATATT CTGATTCGTGGTCTCGCCATCGGCTTCTTCTTTCCTCTTGGCAGCTTCACATGGCTGCTTCGAGGCGACGTCTGG AACGACAAATGGCGCGTCTTCGTTGCCTTTGGCGTCATCCTGAGCGTCGCCACTGGCGTTGTCAAGGGGATATCC GAGCAGCGCTGA
Transcript	>Ophun1\|4112 ATGACGGACCCCCCGCCACCAGCCTCAGGCCCCCTCCACCTAACCATCCGCTTCTCCTCGTCCATCCCCGACCTC GACCTCGACATCGCATCCCCAGAGCGCACCACCGTCCTCTCCCTCAAGCATCTCCTCCGCTCCCGCATCGACTCC CGCAGCCGTCTGCGCCTCATCTACCAGGGCCACATCCTTCCCGATCCGTGCGCCCTCAGCGCCGTCCTCAGGCCC CTGCCCTCGGCGCAGCAAGACGACGACAATCATGCGGGAGCCACCAAGGGAAAGGCCGTCGCCGCGCTGCTCCGC ATCTACGTGAACTGCTCCATCGGCGATGAGCTCTCGGAAGAGGACCTCGCCGCCGAGGAGGCTGCCGCCCATGAC CCTCCCGCCGACGTCGAACCCGGCTCCGGCGCTGGTAGCTCCGGCCGTCAGCCCCGGAAGCGCCCCCGTCCCCGA GGCTTCGACCGCTTCCTCCAAGCCGGCTTCACGGCATCCGAGATCTCGACGCTACGTGCCCAGTTCACCCTCATC CAGTCCAGCCGCTTCCTCCCCGACTCCATGCCCTCTCCCGACTCCATGCGCAGCCTCGAAGATGCCTGGATAGAC TCCAACGCGGGGCCCATGCCGACGACGGCGGCCATGATGGAAGACGACGGTAGCATTGCTTCTTACGTGGATATT CTGATTCGTGGTCTCGCCATCGGCTTCTTCTTTCCTCTTGGCAGCTTCACATGGCTGCTTCGAGGCGACGTCTGG AACGACAAATGGCGCGTCTTCGTTGCCTTTGGCGTCATCCTGAGCGTCGCCACTGGCGTTGTCAAGGGGATATCC GAGCAGCGCTGA
Gene	>Ophun1\|4112 ATGACGGACCCCCCGCCACCAGCCTCAGGCCCCCTCCACCTAACCATCCGCTTCTCCTCGTCCATCCCCGACCTC GACCTCGACATCGCATCCCCAGAGCGCACCACCGTCCTCTCCCTCAAGCATCTCCTCCGCTCCCGCATCGACTCC CGCAGCCGTCTGCGCCTCATCTACCAGGGCCACATCCTTCCCGATCCGTGCGCCCTCAGCGCCGTCCTCAGGCCC CTGCCCTCGGCGCAGCAAGACGACGACAATCATGCGGGAGCCACCAAGGGAAAGGCCGTCGCCGCGCTGCTCCGC ATCTACGTGAACTGCTCCATCGGCGATGAGCTCTCGGAAGAGGACCTCGCCGCCGAGGAGGCTGCCGCCCATGAC CCTCCCGCCGACGTCGAACCCGGCTCCGGCGCTGGTAGCTCCGGCCGTCAGCCCCGGAAGCGCCCCCGTCCCCGA GGCTTCGACCGCTTCCTCCAAGCCGGCTTCACGGCATCCGAGATCTCGACGCTACGTGCCCAGTTCACCCTCATC CAGTCCAGCCGCTTCCTCCCCGACTCCATGCCCTCTCCCGACTCCATGCGCAGCCTCGAAGATGCCTGGATAGAC TCCAACGCGGGGCCCATGCCGACGACGGCGGCCATGATGGAAGACGACGGTAGCATTGCTTCTTACGTGGATATT CTGATTCGTGGTCTCGCCATCGGCTTCTTCTTTCCTCTTGGCAGCTTCACATGGCTGCTTCGAGGCGACGTCTGG AACGACAAATGGCGCGTCTTCGTTGCCTTTGGCGTCATCCTGAGCGTCGCCACTGGCGTTGTCAAGGGGATATCC GAGCAGCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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