© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4105 |
| Gene name | |
| Location | Contig_376:16923..17943 |
| Strand | - |
| Gene length (bp) | 1020 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 2.6E-21 | 50 | 241 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6Z7K5|MTP3_ORYSJ | Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 | 25 | 331 | 5.0E-51 |
| sp|Q5NA18|MTP5_ORYSJ | Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1 | 27 | 337 | 1.0E-49 |
| sp|Q9LDU0|MTP7_ORYSJ | Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 | 22 | 323 | 6.0E-46 |
| sp|Q10PP8|MTP4_ORYSJ | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 | 41 | 323 | 1.0E-45 |
| sp|Q9SAJ7|MTP9_ARATH | Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 | 29 | 323 | 1.0E-42 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6Z7K5|MTP3_ORYSJ | Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 | 25 | 331 | 5.0E-51 |
| sp|Q5NA18|MTP5_ORYSJ | Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1 | 27 | 337 | 1.0E-49 |
| sp|Q9LDU0|MTP7_ORYSJ | Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 | 22 | 323 | 6.0E-46 |
| sp|Q10PP8|MTP4_ORYSJ | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 | 41 | 323 | 1.0E-45 |
| sp|Q9SAJ7|MTP9_ARATH | Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 | 29 | 323 | 1.0E-42 |
| sp|Q9M2P2|MTPC3_ARATH | Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2 | 53 | 333 | 2.0E-42 |
| sp|Q0WU02|MTP10_ARATH | Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1 | 11 | 334 | 7.0E-41 |
| sp|O80632|MTP11_ARATH | Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2 SV=1 | 24 | 332 | 2.0E-39 |
| sp|Q0DHJ5|MTP6_ORYSJ | Metal tolerance protein 6 OS=Oryza sativa subsp. japonica GN=MTP6 PE=2 SV=2 | 27 | 332 | 2.0E-32 |
| sp|A8AL14|FIEF_CITK8 | Cation-efflux pump FieF OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fieF PE=3 SV=1 | 46 | 305 | 4.0E-07 |
| sp|A7MQ82|FIEF_CROS8 | Cation-efflux pump FieF OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=fieF PE=3 SV=1 | 68 | 305 | 5.0E-07 |
| sp|A8GLB1|FIEF_SERP5 | Cation-efflux pump FieF OS=Serratia proteamaculans (strain 568) GN=fieF PE=3 SV=1 | 61 | 330 | 3.0E-06 |
| sp|B7LVD0|FIEF_ESCF3 | Ferrous-iron efflux pump FieF OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fieF PE=3 SV=1 | 56 | 305 | 5.0E-06 |
| sp|Q6CZ45|FIEF_PECAS | Cation-efflux pump FieF OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=fieF PE=3 SV=1 | 46 | 305 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0006811 | ion transport | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 44 | 66 | 22 |
| 2 | 81 | 98 | 17 |
| 3 | 118 | 135 | 17 |
| 4 | 150 | 172 | 22 |
| 5 | 193 | 212 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4105 MDPDPDGDGDQERCGALQRVRGNLAELLPDEERERRARAAKKAAWAINFNVVANVLLLAGKAVAAVTTGSLSLVA SLVDSALDLLCTLIVWSTNRLVLWRLGALRRRFPVGRRRLEPVGILVFSIVMIISFLQILRESISRLMPPHSEAE PLGVLATATMVATIVIKGAIGIACRPVRAPKVQALVQDCKTDVVFNSLSLLFPLVGYRAGIWWLDPLGAGLLSIY IVYDWGCTSFDNVVRLSGEAADDDTLRKLTYLAWRFSPVVDGFKSIIAYHAGDGVWAEFDVLLSEDTPLGRSHDI AETLQYCAEALPYVDRAFVTTDYAAVGPTGHALDTERNH* |
| Coding | >Ophun1|4105 ATGGATCCGGATCCGGATGGCGATGGCGATCAGGAGAGGTGTGGTGCCTTGCAGAGGGTGAGGGGCAATCTGGCC GAGTTGCTGCCTGATGAGGAGAGGGAGAGGCGGGCGAGGGCGGCGAAGAAGGCTGCTTGGGCCATCAACTTCAAC GTCGTGGCCAACGTCCTCCTCCTAGCTGGCAAGGCCGTCGCCGCCGTAACAACAGGCTCTCTCTCGCTGGTGGCC TCGCTCGTGGACTCGGCCCTCGATCTTCTCTGCACGCTCATCGTCTGGTCGACCAATAGGCTGGTGCTATGGCGA CTGGGCGCCCTACGAAGAAGATTCCCCGTCGGGCGTCGCCGTCTGGAACCGGTCGGCATCCTCGTCTTCTCCATC GTCATGATCATCTCCTTCCTGCAGATCCTCCGAGAGTCCATCTCCCGACTCATGCCCCCCCACAGCGAAGCCGAA CCCCTAGGCGTCCTCGCCACGGCGACAATGGTGGCCACCATCGTCATCAAGGGCGCCATCGGCATTGCCTGTCGT CCCGTCCGCGCCCCCAAGGTTCAGGCCCTGGTGCAAGACTGCAAGACGGACGTCGTCTTCAACTCGCTCTCGCTG CTGTTCCCCCTCGTCGGCTACCGAGCTGGAATCTGGTGGTTGGACCCGTTGGGAGCTGGCCTGCTGTCCATCTAC ATCGTCTACGACTGGGGCTGCACCTCATTCGACAACGTCGTCCGTCTCTCCGGCGAGGCAGCTGACGACGACACG CTGCGGAAGCTCACCTATCTGGCCTGGCGCTTCTCTCCCGTCGTCGACGGCTTCAAGTCCATCATCGCCTATCAC GCCGGCGACGGCGTCTGGGCCGAGTTCGACGTCCTCCTCAGCGAGGACACGCCGCTGGGGCGCTCTCACGATATT GCAGAGACGCTTCAGTATTGCGCTGAGGCGTTGCCGTATGTTGATCGCGCCTTTGTCACGACGGACTATGCTGCT GTTGGTCCTACGGGCCATGCGCTTGACACGGAGCGGAATCATTGA |
| Transcript | >Ophun1|4105 ATGGATCCGGATCCGGATGGCGATGGCGATCAGGAGAGGTGTGGTGCCTTGCAGAGGGTGAGGGGCAATCTGGCC GAGTTGCTGCCTGATGAGGAGAGGGAGAGGCGGGCGAGGGCGGCGAAGAAGGCTGCTTGGGCCATCAACTTCAAC GTCGTGGCCAACGTCCTCCTCCTAGCTGGCAAGGCCGTCGCCGCCGTAACAACAGGCTCTCTCTCGCTGGTGGCC TCGCTCGTGGACTCGGCCCTCGATCTTCTCTGCACGCTCATCGTCTGGTCGACCAATAGGCTGGTGCTATGGCGA CTGGGCGCCCTACGAAGAAGATTCCCCGTCGGGCGTCGCCGTCTGGAACCGGTCGGCATCCTCGTCTTCTCCATC GTCATGATCATCTCCTTCCTGCAGATCCTCCGAGAGTCCATCTCCCGACTCATGCCCCCCCACAGCGAAGCCGAA CCCCTAGGCGTCCTCGCCACGGCGACAATGGTGGCCACCATCGTCATCAAGGGCGCCATCGGCATTGCCTGTCGT CCCGTCCGCGCCCCCAAGGTTCAGGCCCTGGTGCAAGACTGCAAGACGGACGTCGTCTTCAACTCGCTCTCGCTG CTGTTCCCCCTCGTCGGCTACCGAGCTGGAATCTGGTGGTTGGACCCGTTGGGAGCTGGCCTGCTGTCCATCTAC ATCGTCTACGACTGGGGCTGCACCTCATTCGACAACGTCGTCCGTCTCTCCGGCGAGGCAGCTGACGACGACACG CTGCGGAAGCTCACCTATCTGGCCTGGCGCTTCTCTCCCGTCGTCGACGGCTTCAAGTCCATCATCGCCTATCAC GCCGGCGACGGCGTCTGGGCCGAGTTCGACGTCCTCCTCAGCGAGGACACGCCGCTGGGGCGCTCTCACGATATT GCAGAGACGCTTCAGTATTGCGCTGAGGCGTTGCCGTATGTTGATCGCGCCTTTGTCACGACGGACTATGCTGCT GTTGGTCCTACGGGCCATGCGCTTGACACGGAGCGGAATCATTGA |
| Gene | >Ophun1|4105 ATGGATCCGGATCCGGATGGCGATGGCGATCAGGAGAGGTGTGGTGCCTTGCAGAGGGTGAGGGGCAATCTGGCC GAGTTGCTGCCTGATGAGGAGAGGGAGAGGCGGGCGAGGGCGGCGAAGAAGGCTGCTTGGGCCATCAACTTCAAC GTCGTGGCCAACGTCCTCCTCCTAGCTGGCAAGGCCGTCGCCGCCGTAACAACAGGCTCTCTCTCGCTGGTGGCC TCGCTCGTGGACTCGGCCCTCGATCTTCTCTGCACGCTCATCGTCTGGTCGACCAATAGGCTGGTGCTATGGCGA CTGGGCGCCCTACGAAGAAGATTCCCCGTCGGGCGTCGCCGTCTGGAACCGGTCGGCATCCTCGTCTTCTCCATC GTCATGATCATCTCCTTCCTGCAGATCCTCCGAGAGTCCATCTCCCGACTCATGCCCCCCCACAGCGAAGCCGAA CCCCTAGGCGTCCTCGCCACGGCGACAATGGTGGCCACCATCGTCATCAAGGGCGCCATCGGCATTGCCTGTCGT CCCGTCCGCGCCCCCAAGGTTCAGGCCCTGGTGCAAGACTGCAAGACGGACGTCGTCTTCAACTCGCTCTCGCTG CTGTTCCCCCTCGTCGGCTACCGAGCTGGAATCTGGTGGTTGGACCCGTTGGGAGCTGGCCTGCTGTCCATCTAC ATCGTCTACGACTGGGGCTGCACCTCATTCGACAACGTCGTCCGTCTCTCCGGCGAGGCAGCTGACGACGACACG CTGCGGAAGCTCACCTATCTGGCCTGGCGCTTCTCTCCCGTCGTCGACGGCTTCAAGTCCATCATCGCCTATCAC GCCGGCGACGGCGTCTGGGCCGAGTTCGACGTCCTCCTCAGCGAGGACACGCCGCTGGGGCGCTCTCACGATATT GCAGAGACGCTTCAGTATTGCGCTGAGGCGTTGCCGTATGTTGATCGCGCCTTTGTCACGACGGACTATGCTGCT GTTGGTCCTACGGGCCATGCGCTTGACACGGAGCGGAATCATTGA |