© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4089 |
| Gene name | |
| Location | Contig_373:6349..8497 |
| Strand | - |
| Gene length (bp) | 2148 |
| Transcript length (bp) | 2148 |
| Coding sequence length (bp) | 2148 |
| Protein length (aa) | 716 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04006 | Mpp10 | Mpp10 protein | 4.7E-101 | 65 | 659 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47083|MPP10_YEAST | U3 small nucleolar RNA-associated protein MPP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MPP10 PE=1 SV=1 | 235 | 713 | 3.0E-61 |
| sp|O13910|MPP10_SCHPO | U3 small nucleolar ribonucleoprotein protein mpp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mpp10 PE=1 SV=1 | 234 | 715 | 8.0E-49 |
| sp|O00566|MPP10_HUMAN | U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2 | 406 | 614 | 4.0E-25 |
| sp|Q810V0|MPP10_MOUSE | U3 small nucleolar ribonucleoprotein protein MPP10 OS=Mus musculus GN=Mphosph10 PE=1 SV=2 | 406 | 614 | 4.0E-24 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006364 | rRNA processing | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | Yes |
| GO:0034457 | Mpp10 complex | Yes |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0008152 | metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0009987 | cellular process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4089 MDTSPSLTSTSHTLTALPPPSRTGRPAGFMATPDGLLSSLGPGSRHIFLRPSAAIPGDSLRLVKETLEGFTGQVV EQQQERRRKRKRVDEVLRLSKVHVDGFQTGQVWQQAKRIIGGVLKFSEDVLEELEEGGVVGVEGEGVGLGLRGEK EEADDDNDDEGDSDSDSEEEDDDEEMDSDLEVENENSVSGGEEEDEEVENDNQVENGVDSNDGNDDDDADENEQD LEGPEEYVQDPHGLNDGFFSIDNFNRQTQWLEEQDARRGDDANEASEDDEIDWGADPSAPEKGRPDADSEDDDGP TFGDMALDAPEGDSEDDAMNGDVDGGDGLNANDIYYKDFFEPPPRKSKGKGKKSHAAAEEAQQPAEVDVERAMAD VRRDLFDDESQDEDSDDGMSDASVIAGGGRRSTHERRQAKLANEIRKLEAASVAKREWMLSGEAAAADRPMDSLL EQDLDFEHVGKPVNVVTPEVNESIEELIKRRILAQEFDEVIRRRPDAEAVPTGTRRGMMDINDRKPEKSLAAIYE DEHVKRTDPDAHTSQEDAKLQREEAEIEALWKETCGRLDALCSWNYKPKPATATVSVIADVATVTMEDAQPGTAQ AVAGSASRVAPHELYRPGTGEAGAADEHVSRGGAPQARAEMTREDRARRRRRLRSKVAKAGVGRESAAAKSRRET LAALKKGNVTVVNRRGEVTDVQGKKKTKAGKGVSGVGLKL* |
| Coding | >Ophun1|4089 ATGGATACATCACCGTCGTTGACGTCGACATCGCATACGCTGACGGCTCTGCCGCCGCCGTCGAGGACGGGCAGA CCCGCTGGATTCATGGCCACGCCGGACGGGCTGCTCTCGAGCTTGGGCCCTGGCAGCCGACACATATTTCTGAGA CCGAGTGCGGCGATACCTGGCGACTCACTGCGGTTGGTAAAGGAGACGTTGGAGGGATTCACGGGCCAGGTGGTG GAGCAGCAGCAGGAGCGGCGGCGGAAGCGCAAGAGGGTCGACGAGGTGCTGAGGCTGAGCAAGGTGCACGTTGAT GGCTTTCAGACGGGGCAGGTGTGGCAGCAGGCGAAGCGTATCATTGGCGGGGTGTTGAAGTTTTCGGAAGACGTG CTGGAGGAATTGGAGGAGGGGGGAGTTGTGGGCGTTGAGGGGGAGGGGGTTGGCTTAGGGCTTCGGGGGGAGAAA GAAGAAGCCGACGATGACAACGACGACGAAGGCGACTCAGACTCAGACTCGGAAGAAGAAGACGATGATGAGGAG ATGGATTCTGATCTGGAGGTTGAGAATGAGAATTCGGTGTCTGGAGGTGAAGAGGAAGACGAGGAGGTGGAAAAT GACAACCAAGTTGAGAACGGGGTGGACTCAAACGATGGCAATGACGACGATGATGCCGACGAAAACGAACAAGAC TTGGAAGGGCCGGAAGAATACGTCCAAGACCCCCATGGTCTGAACGATGGCTTCTTCTCCATCGACAACTTCAAC AGGCAGACGCAATGGCTTGAGGAGCAGGATGCAAGGAGAGGAGACGATGCAAACGAGGCCAGTGAGGACGATGAG ATTGACTGGGGAGCGGATCCATCCGCCCCTGAAAAGGGCCGCCCCGACGCCGACAGTGAGGACGACGATGGGCCT ACCTTTGGGGACATGGCGCTCGACGCGCCCGAAGGGGATAGCGAAGACGATGCTATGAATGGAGATGTGGACGGT GGTGACGGGCTCAACGCCAATGACATCTACTACAAGGACTTCTTCGAGCCACCACCTCGAAAGAGCAAGGGTAAG GGCAAGAAGTCCCATGCCGCGGCAGAGGAGGCGCAGCAGCCTGCGGAAGTGGACGTGGAGCGGGCCATGGCCGAC GTACGACGCGATCTCTTCGACGACGAGTCGCAAGATGAAGACTCGGACGATGGCATGTCGGACGCGTCAGTCATC GCAGGCGGCGGACGGCGATCGACGCACGAAAGGCGACAGGCGAAGCTGGCCAATGAAATCCGCAAGCTCGAGGCG GCATCGGTCGCGAAGCGGGAATGGATGCTATCGGGCGAGGCGGCGGCAGCGGACCGGCCCATGGACTCGCTGCTG GAACAGGACCTCGACTTTGAGCACGTCGGCAAGCCTGTAAACGTCGTGACGCCAGAGGTCAACGAGAGCATCGAA GAGCTCATCAAGCGGCGCATTCTGGCGCAGGAATTCGACGAGGTGATTCGCAGACGACCCGACGCAGAAGCCGTC CCGACTGGCACCCGACGCGGCATGATGGACATCAACGACCGCAAGCCGGAGAAGAGCCTGGCCGCAATCTACGAG GACGAGCACGTCAAGCGGACCGATCCAGACGCTCACACCAGCCAGGAAGACGCCAAGCTTCAGCGCGAAGAGGCC GAGATAGAAGCCCTCTGGAAGGAAACATGCGGCCGGCTCGACGCCCTCTGCAGCTGGAACTACAAGCCCAAGCCA GCAACGGCAACCGTCTCGGTGATAGCCGACGTCGCCACCGTCACCATGGAAGACGCCCAGCCCGGAACCGCCCAG GCCGTCGCCGGCTCCGCCTCCCGCGTCGCGCCCCACGAGCTCTACCGGCCCGGAACAGGCGAAGCCGGAGCAGCG GACGAGCACGTCTCCCGCGGAGGCGCGCCACAAGCCCGCGCCGAGATGACGCGCGAAGACCGCGCCCGCCGCCGC CGCCGTCTCCGTTCCAAGGTCGCCAAGGCGGGCGTCGGTCGCGAATCGGCGGCGGCCAAGTCGAGGCGCGAGACG CTGGCTGCGCTTAAGAAGGGGAATGTTACGGTTGTTAATCGCAGGGGGGAGGTCACTGATGTGCAGGGCAAGAAG AAAACCAAGGCGGGTAAGGGGGTGTCGGGTGTGGGCTTGAAGCTGTAG |
| Transcript | >Ophun1|4089 ATGGATACATCACCGTCGTTGACGTCGACATCGCATACGCTGACGGCTCTGCCGCCGCCGTCGAGGACGGGCAGA CCCGCTGGATTCATGGCCACGCCGGACGGGCTGCTCTCGAGCTTGGGCCCTGGCAGCCGACACATATTTCTGAGA CCGAGTGCGGCGATACCTGGCGACTCACTGCGGTTGGTAAAGGAGACGTTGGAGGGATTCACGGGCCAGGTGGTG GAGCAGCAGCAGGAGCGGCGGCGGAAGCGCAAGAGGGTCGACGAGGTGCTGAGGCTGAGCAAGGTGCACGTTGAT GGCTTTCAGACGGGGCAGGTGTGGCAGCAGGCGAAGCGTATCATTGGCGGGGTGTTGAAGTTTTCGGAAGACGTG CTGGAGGAATTGGAGGAGGGGGGAGTTGTGGGCGTTGAGGGGGAGGGGGTTGGCTTAGGGCTTCGGGGGGAGAAA GAAGAAGCCGACGATGACAACGACGACGAAGGCGACTCAGACTCAGACTCGGAAGAAGAAGACGATGATGAGGAG ATGGATTCTGATCTGGAGGTTGAGAATGAGAATTCGGTGTCTGGAGGTGAAGAGGAAGACGAGGAGGTGGAAAAT GACAACCAAGTTGAGAACGGGGTGGACTCAAACGATGGCAATGACGACGATGATGCCGACGAAAACGAACAAGAC TTGGAAGGGCCGGAAGAATACGTCCAAGACCCCCATGGTCTGAACGATGGCTTCTTCTCCATCGACAACTTCAAC AGGCAGACGCAATGGCTTGAGGAGCAGGATGCAAGGAGAGGAGACGATGCAAACGAGGCCAGTGAGGACGATGAG ATTGACTGGGGAGCGGATCCATCCGCCCCTGAAAAGGGCCGCCCCGACGCCGACAGTGAGGACGACGATGGGCCT ACCTTTGGGGACATGGCGCTCGACGCGCCCGAAGGGGATAGCGAAGACGATGCTATGAATGGAGATGTGGACGGT GGTGACGGGCTCAACGCCAATGACATCTACTACAAGGACTTCTTCGAGCCACCACCTCGAAAGAGCAAGGGTAAG GGCAAGAAGTCCCATGCCGCGGCAGAGGAGGCGCAGCAGCCTGCGGAAGTGGACGTGGAGCGGGCCATGGCCGAC GTACGACGCGATCTCTTCGACGACGAGTCGCAAGATGAAGACTCGGACGATGGCATGTCGGACGCGTCAGTCATC GCAGGCGGCGGACGGCGATCGACGCACGAAAGGCGACAGGCGAAGCTGGCCAATGAAATCCGCAAGCTCGAGGCG GCATCGGTCGCGAAGCGGGAATGGATGCTATCGGGCGAGGCGGCGGCAGCGGACCGGCCCATGGACTCGCTGCTG GAACAGGACCTCGACTTTGAGCACGTCGGCAAGCCTGTAAACGTCGTGACGCCAGAGGTCAACGAGAGCATCGAA GAGCTCATCAAGCGGCGCATTCTGGCGCAGGAATTCGACGAGGTGATTCGCAGACGACCCGACGCAGAAGCCGTC CCGACTGGCACCCGACGCGGCATGATGGACATCAACGACCGCAAGCCGGAGAAGAGCCTGGCCGCAATCTACGAG GACGAGCACGTCAAGCGGACCGATCCAGACGCTCACACCAGCCAGGAAGACGCCAAGCTTCAGCGCGAAGAGGCC GAGATAGAAGCCCTCTGGAAGGAAACATGCGGCCGGCTCGACGCCCTCTGCAGCTGGAACTACAAGCCCAAGCCA GCAACGGCAACCGTCTCGGTGATAGCCGACGTCGCCACCGTCACCATGGAAGACGCCCAGCCCGGAACCGCCCAG GCCGTCGCCGGCTCCGCCTCCCGCGTCGCGCCCCACGAGCTCTACCGGCCCGGAACAGGCGAAGCCGGAGCAGCG GACGAGCACGTCTCCCGCGGAGGCGCGCCACAAGCCCGCGCCGAGATGACGCGCGAAGACCGCGCCCGCCGCCGC CGCCGTCTCCGTTCCAAGGTCGCCAAGGCGGGCGTCGGTCGCGAATCGGCGGCGGCCAAGTCGAGGCGCGAGACG CTGGCTGCGCTTAAGAAGGGGAATGTTACGGTTGTTAATCGCAGGGGGGAGGTCACTGATGTGCAGGGCAAGAAG AAAACCAAGGCGGGTAAGGGGGTGTCGGGTGTGGGCTTGAAGCTGTAG |
| Gene | >Ophun1|4089 ATGGATACATCACCGTCGTTGACGTCGACATCGCATACGCTGACGGCTCTGCCGCCGCCGTCGAGGACGGGCAGA CCCGCTGGATTCATGGCCACGCCGGACGGGCTGCTCTCGAGCTTGGGCCCTGGCAGCCGACACATATTTCTGAGA CCGAGTGCGGCGATACCTGGCGACTCACTGCGGTTGGTAAAGGAGACGTTGGAGGGATTCACGGGCCAGGTGGTG GAGCAGCAGCAGGAGCGGCGGCGGAAGCGCAAGAGGGTCGACGAGGTGCTGAGGCTGAGCAAGGTGCACGTTGAT GGCTTTCAGACGGGGCAGGTGTGGCAGCAGGCGAAGCGTATCATTGGCGGGGTGTTGAAGTTTTCGGAAGACGTG CTGGAGGAATTGGAGGAGGGGGGAGTTGTGGGCGTTGAGGGGGAGGGGGTTGGCTTAGGGCTTCGGGGGGAGAAA GAAGAAGCCGACGATGACAACGACGACGAAGGCGACTCAGACTCAGACTCGGAAGAAGAAGACGATGATGAGGAG ATGGATTCTGATCTGGAGGTTGAGAATGAGAATTCGGTGTCTGGAGGTGAAGAGGAAGACGAGGAGGTGGAAAAT GACAACCAAGTTGAGAACGGGGTGGACTCAAACGATGGCAATGACGACGATGATGCCGACGAAAACGAACAAGAC TTGGAAGGGCCGGAAGAATACGTCCAAGACCCCCATGGTCTGAACGATGGCTTCTTCTCCATCGACAACTTCAAC AGGCAGACGCAATGGCTTGAGGAGCAGGATGCAAGGAGAGGAGACGATGCAAACGAGGCCAGTGAGGACGATGAG ATTGACTGGGGAGCGGATCCATCCGCCCCTGAAAAGGGCCGCCCCGACGCCGACAGTGAGGACGACGATGGGCCT ACCTTTGGGGACATGGCGCTCGACGCGCCCGAAGGGGATAGCGAAGACGATGCTATGAATGGAGATGTGGACGGT GGTGACGGGCTCAACGCCAATGACATCTACTACAAGGACTTCTTCGAGCCACCACCTCGAAAGAGCAAGGGTAAG GGCAAGAAGTCCCATGCCGCGGCAGAGGAGGCGCAGCAGCCTGCGGAAGTGGACGTGGAGCGGGCCATGGCCGAC GTACGACGCGATCTCTTCGACGACGAGTCGCAAGATGAAGACTCGGACGATGGCATGTCGGACGCGTCAGTCATC GCAGGCGGCGGACGGCGATCGACGCACGAAAGGCGACAGGCGAAGCTGGCCAATGAAATCCGCAAGCTCGAGGCG GCATCGGTCGCGAAGCGGGAATGGATGCTATCGGGCGAGGCGGCGGCAGCGGACCGGCCCATGGACTCGCTGCTG GAACAGGACCTCGACTTTGAGCACGTCGGCAAGCCTGTAAACGTCGTGACGCCAGAGGTCAACGAGAGCATCGAA GAGCTCATCAAGCGGCGCATTCTGGCGCAGGAATTCGACGAGGTGATTCGCAGACGACCCGACGCAGAAGCCGTC CCGACTGGCACCCGACGCGGCATGATGGACATCAACGACCGCAAGCCGGAGAAGAGCCTGGCCGCAATCTACGAG GACGAGCACGTCAAGCGGACCGATCCAGACGCTCACACCAGCCAGGAAGACGCCAAGCTTCAGCGCGAAGAGGCC GAGATAGAAGCCCTCTGGAAGGAAACATGCGGCCGGCTCGACGCCCTCTGCAGCTGGAACTACAAGCCCAAGCCA GCAACGGCAACCGTCTCGGTGATAGCCGACGTCGCCACCGTCACCATGGAAGACGCCCAGCCCGGAACCGCCCAG GCCGTCGCCGGCTCCGCCTCCCGCGTCGCGCCCCACGAGCTCTACCGGCCCGGAACAGGCGAAGCCGGAGCAGCG GACGAGCACGTCTCCCGCGGAGGCGCGCCACAAGCCCGCGCCGAGATGACGCGCGAAGACCGCGCCCGCCGCCGC CGCCGTCTCCGTTCCAAGGTCGCCAAGGCGGGCGTCGGTCGCGAATCGGCGGCGGCCAAGTCGAGGCGCGAGACG CTGGCTGCGCTTAAGAAGGGGAATGTTACGGTTGTTAATCGCAGGGGGGAGGTCACTGATGTGCAGGGCAAGAAG AAAACCAAGGCGGGTAAGGGGGTGTCGGGTGTGGGCTTGAAGCTGTAG |