Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|406
Gene name
LocationContig_111:35138..36267
Strand+
Gene length (bp)1129
Transcript length (bp)1005
Coding sequence length (bp)1005
Protein length (aa) 335

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08633 Rox3 Rox3 mediator complex subunit 1.2E-69 98 311

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q2GW22|MED19_CHAGB Mediator of RNA polymerase II transcription subunit 19 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=ROX3 PE=3 SV=3 1 311 8.0E-100
sp|Q6MW04|MED19_NEUCR Mediator of RNA polymerase II transcription subunit 19 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rox3 PE=3 SV=4 1 328 3.0E-99

GO

GO Term Description Terminal node
GO:0016592 mediator complex Yes
GO:0003712 transcription coregulator activity Yes
GO:0006357 regulation of transcription by RNA polymerase II Yes
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0140110 transcription regulator activity No
GO:0009889 regulation of biosynthetic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0032991 protein-containing complex No
GO:0010468 regulation of gene expression No
GO:0140513 nuclear protein-containing complex No
GO:2001141 regulation of RNA biosynthetic process No
GO:0019222 regulation of metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:0031323 regulation of cellular metabolic process No
GO:0006355 regulation of transcription, DNA-templated No
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0008150 biological_process No
GO:0050794 regulation of cellular process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0080090 regulation of primary metabolic process No
GO:0065007 biological regulation No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0050789 regulation of biological process No
GO:0031326 regulation of cellular biosynthetic process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2316
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|259
Ophiocordyceps australis map64 (Brazil) OphauB2|1369
Ophiocordyceps camponoti-floridani Ophcf2|00599
Ophiocordyceps camponoti-rufipedis Ophun1|406 (this protein)
Ophiocordyceps kimflemingae Ophio5|6288
Ophiocordyceps subramaniannii Hirsu2|3111

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|406
MSVHPQTPQSPCRFSPATSSDSAVMGLSSLATLPTPAHSVNGANAQPDDSPHKRKRALDDMAGPRKKMHLEDDRM
GIEDLHLDVGPKYLLCQTVYPESLPRTSSDLYQMFGLTALAAEVAREKPNGEKNALRKTYKGHIKRLGVAGHFDV
HKKSEDAPSEFMAMIEVPELEWNVHQVKGRDIAHGLSDATLSNLARAVTLSRGSLPKSVWDSSVLGDLALTANDA
PKSLSAKPTAPSTPLASTPNAIGRSKPQLPVAAGPDVARPRRNNKKRSYGDSSFEGYGEGYPDDDAGVDTGYSTG
EGEGGQKRRKKSSGSSPTYSSMRQQSYGPGMVGA*
Coding >Ophun1|406
ATGTCTGTCCATCCGCAGACGCCTCAGAGCCCCTGCCGCTTCTCGCCAGCGACTTCGTCCGACTCTGCCGTCATG
GGACTCTCCTCTCTCGCCACCCTGCCGACGCCCGCCCACAGTGTCAACGGCGCCAATGCCCAGCCCGACGATTCG
CCGCACAAGCGGAAACGCGCACTCGACGACATGGCTGGCCCCCGCAAGAAGATGCACCTTGAAGACGATAGGATG
GGAATCGAGGATCTCCATCTCGACGTCGGGCCCAAGTATCTGCTGTGCCAGACCGTCTACCCAGAGTCGCTCCCC
CGAACATCCTCAGACCTCTACCAAATGTTCGGCCTCACCGCCCTCGCCGCAGAGGTGGCGCGCGAAAAACCAAAC
GGCGAAAAGAATGCGCTGCGGAAAACCTACAAGGGTCACATCAAGCGCCTGGGTGTCGCCGGCCATTTCGACGTG
CATAAAAAGAGTGAAGACGCCCCGTCAGAGTTCATGGCCATGATCGAGGTTCCCGAGCTCGAGTGGAACGTCCAC
CAGGTCAAGGGCCGCGACATCGCCCACGGCCTGTCCGACGCTACCCTCTCCAACCTCGCTCGAGCCGTCACCCTC
TCCAGAGGCAGCCTGCCCAAGTCTGTCTGGGACTCGTCCGTCCTCGGCGACCTCGCCCTCACAGCCAACGACGCA
CCCAAGTCGCTATCGGCAAAGCCCACGGCGCCCAGCACGCCTCTGGCCTCGACGCCCAACGCGATAGGCCGGTCG
AAACCGCAGCTCCCCGTCGCCGCCGGCCCCGACGTCGCCCGCCCGCGGCGAAACAACAAGAAGCGCTCCTACGGC
GACAGCAGCTTCGAGGGATACGGAGAGGGCTATCCGGACGATGACGCCGGTGTCGACACGGGCTATTCCACCGGC
GAAGGCGAGGGCGGCCAGAAGCGGCGGAAAAAGAGTTCCGGCAGCTCGCCCACCTACTCTTCGATGCGCCAGCAG
AGTTACGGCCCCGGCATGGTCGGCGCCTAG
Transcript >Ophun1|406
ATGTCTGTCCATCCGCAGACGCCTCAGAGCCCCTGCCGCTTCTCGCCAGCGACTTCGTCCGACTCTGCCGTCATG
GGACTCTCCTCTCTCGCCACCCTGCCGACGCCCGCCCACAGTGTCAACGGCGCCAATGCCCAGCCCGACGATTCG
CCGCACAAGCGGAAACGCGCACTCGACGACATGGCTGGCCCCCGCAAGAAGATGCACCTTGAAGACGATAGGATG
GGAATCGAGGATCTCCATCTCGACGTCGGGCCCAAGTATCTGCTGTGCCAGACCGTCTACCCAGAGTCGCTCCCC
CGAACATCCTCAGACCTCTACCAAATGTTCGGCCTCACCGCCCTCGCCGCAGAGGTGGCGCGCGAAAAACCAAAC
GGCGAAAAGAATGCGCTGCGGAAAACCTACAAGGGTCACATCAAGCGCCTGGGTGTCGCCGGCCATTTCGACGTG
CATAAAAAGAGTGAAGACGCCCCGTCAGAGTTCATGGCCATGATCGAGGTTCCCGAGCTCGAGTGGAACGTCCAC
CAGGTCAAGGGCCGCGACATCGCCCACGGCCTGTCCGACGCTACCCTCTCCAACCTCGCTCGAGCCGTCACCCTC
TCCAGAGGCAGCCTGCCCAAGTCTGTCTGGGACTCGTCCGTCCTCGGCGACCTCGCCCTCACAGCCAACGACGCA
CCCAAGTCGCTATCGGCAAAGCCCACGGCGCCCAGCACGCCTCTGGCCTCGACGCCCAACGCGATAGGCCGGTCG
AAACCGCAGCTCCCCGTCGCCGCCGGCCCCGACGTCGCCCGCCCGCGGCGAAACAACAAGAAGCGCTCCTACGGC
GACAGCAGCTTCGAGGGATACGGAGAGGGCTATCCGGACGATGACGCCGGTGTCGACACGGGCTATTCCACCGGC
GAAGGCGAGGGCGGCCAGAAGCGGCGGAAAAAGAGTTCCGGCAGCTCGCCCACCTACTCTTCGATGCGCCAGCAG
AGTTACGGCCCCGGCATGGTCGGCGCCTAG
Gene >Ophun1|406
ATGTCTGTCCATCCGCAGACGCCTCAGAGCCCCTGCCGCTTCTCGCCAGCGACTTCGTCCGACTCTGCCGTCATG
GGACTCTCCTCTCTCGCCACCCTGCCGACGCCCGCCCACAGTGTCAACGGCGCCAATGCCCAGCCCGACGATTCG
CCGCACAAGCGGAAACGCGCACTCGACGACATGGCTGGCCCCCGCAAGAAGATGCACCTTGAAGACGATAGGATG
GGAATCGAGGATCTCCATCTCGACGTCGGGCCCAAGTATCTGCTGTGCCAGACCGGTAATCTCTGTCCCCCGTCT
TCCCTTGTTCTCTCCCTCCCTCCCTCTCTCTAGCCGTTGCTGACGACCCGAAAGTCTACCCAGAGTCGCTCCCCC
GAACATCCTCAGACCTCTACCAAATGTTCGGCCTCACCGCCCTCGCCGCAGAGGTGGCGCGCGAAAAACCAAACG
GCGAAAAGAATGCGCTGCGGAAAACCTACAAGGGTCACATCAAGCGCCTGGGTGTCGCCGGCCATTTCGACGTGC
ATAAAAAGAGTGAAGACGCCCCGTCAGAGTTCATGGCCATGATCGAGGTTCCCGAGCTCGAGTGGAACGTCCACC
AGGTCAAGGGCCGCGACATCGCCCACGGCCTGTCCGACGCTACCCTCTCCAACCTCGCTCGAGCCGTCACCCTCT
CCAGAGGCAGCCTGCCCAAGTCTGTCTGGGACTCGTCCGTCCTCGGCGACCTCGCCCTCACAGCCAACGACGCAC
CCAAGTCGCTATCGGCAAAGCCCACGGCGCCCAGCACGCCTCTGGCCTCGACGCCCAACGCGATAGGCCGGTCGA
AACCGCAGCTCCCCGTCGCCGCCGGCCCCGACGTCGCCCGCCCGCGGCGAAACAACAAGAAGCGCTCCTACGGCG
ACAGCAGCTTCGAGGGATACGGAGAGGGCTATCCGGACGATGACGCCGGTGTCGACACGGGCTATTCCACCGGCG
AAGGCGAGGGCGGCCAGAAGCGGCGGAAAAAGGTCAGACGCCCAATCCCTCTACCCTTACCCTGCTCTGACATGC
TCTCCAGAGTTCCGGCAGCTCGCCCACCTACTCTTCGATGCGCCAGCAGAGTTACGGCCCCGGCATGGTCGGCGC
CTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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