Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophun1\|4023
Gene name
Location	Contig_366:15760..17068
Strand	+
Gene length (bp)	1308
Transcript length (bp)	1308
Coding sequence length (bp)	1308
Protein length (aa)	436

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13516	LRR_6	Leucine Rich repeat	1.0E+00	240	259
PF13516	LRR_6	Leucine Rich repeat	2.0E-02	295	317

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P41391\|RNA1_SCHPO	Ran GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rna1 PE=1 SV=1	8	435	5.0E-72
sp\|P11745\|RNA1_YEAST	Ran GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA1 PE=1 SV=2	5	348	4.0E-65
sp\|O13066\|RAGP1_XENLA	Ran GTPase-activating protein 1 OS=Xenopus laevis GN=rangap1 PE=2 SV=1	5	352	2.0E-45
sp\|P46060\|RAGP1_HUMAN	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	8	352	3.0E-43
sp\|P46061\|RAGP1_MOUSE	Ran GTPase-activating protein 1 OS=Mus musculus GN=Rangap1 PE=1 SV=2	8	352	1.0E-42

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P41391\|RNA1_SCHPO	Ran GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rna1 PE=1 SV=1	8	435	5.0E-72
sp\|P11745\|RNA1_YEAST	Ran GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA1 PE=1 SV=2	5	348	4.0E-65
sp\|O13066\|RAGP1_XENLA	Ran GTPase-activating protein 1 OS=Xenopus laevis GN=rangap1 PE=2 SV=1	5	352	2.0E-45
sp\|P46060\|RAGP1_HUMAN	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	8	352	3.0E-43
sp\|P46061\|RAGP1_MOUSE	Ran GTPase-activating protein 1 OS=Mus musculus GN=Rangap1 PE=1 SV=2	8	352	1.0E-42
sp\|Q9VIW3\|RAGP1_DROME	Ran GTPase-activating protein OS=Drosophila melanogaster GN=RanGAP PE=1 SV=1	3	350	5.0E-41
sp\|P34342\|RGP2_CAEEL	Ran GTPase-activating protein 2 OS=Caenorhabditis elegans GN=ran-2 PE=4 SV=3	5	346	2.0E-34
sp\|P34342\|RGP2_CAEEL	Ran GTPase-activating protein 2 OS=Caenorhabditis elegans GN=ran-2 PE=4 SV=3	7	309	2.0E-30
sp\|Q9LE82\|RAGP1_ARATH	RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1	37	344	5.0E-13
sp\|P29315\|RINI_RAT	Ribonuclease inhibitor OS=Rattus norvegicus GN=Rnh1 PE=1 SV=2	134	352	6.0E-07
sp\|Q9M651\|RAGP2_ARATH	RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2	70	309	1.0E-06
sp\|Q7RTR2\|NLRC3_HUMAN	Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2	135	308	9.0E-06

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GO

GO Term	Description	Terminal node
GO:0005515	protein binding	Yes
GO:0003674	molecular_function	No
GO:0005488	binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophun1\|4023 MAGTDKVFSIEGRGLKLDTAADLEPHVAQLRAHDVEEVRLLGNTLGVEACKLLGEILATKKNLKVCLYLPGYYDL ADVCKVANLADIFTGRLLSEIPDALSSLLTSILNLPHLHTINLNDNAFGLNTQAPLVAFLASHVPLQHLHLNNNG LGPHAGILIADALSELHASKEAARKEGKDVPDLKTIICGRNRLENGSMTAWAKTFSLHNKIEEVKMVQNGIRQEG ISHLLSQGLNHASELRILDLQDNTFTLMGAKALAKVTPTWTLLSELGIGDSLLGARGGVLLSEALALGKNDKLET LRLQYNDITAVGLRGFAAAAKDALPALKRIELNGNKFSEDDGSIRALQELLEERKEALANDDTDEADWGVDSLSD LESEDSDEEEEDEEDEEDIGPEEKAEKLVKEAEEAQAEPVVQVKDAEVEELAKKLAKTNV*
Coding	>Ophun1\|4023 ATGGCAGGCACTGACAAGGTCTTCTCTATCGAGGGCAGAGGCCTGAAGCTCGACACGGCCGCGGATCTCGAGCCT CACGTCGCCCAACTCAGGGCTCACGATGTCGAAGAAGTCCGGCTCTTGGGGAACACGCTTGGCGTTGAGGCCTGC AAGCTTCTAGGAGAGATTTTGGCTACCAAGAAGAACCTCAAGGTTTGCCTCTACTTGCCTGGCTATTATGACCTC GCTGACGTCTGCAAGGTTGCCAACCTCGCCGACATCTTCACCGGCCGACTCCTGTCAGAGATTCCCGACGCTCTT TCTTCCCTCCTCACATCCATTCTCAACCTGCCCCATCTTCACACTATCAATCTCAACGACAACGCTTTCGGTCTC AACACGCAGGCGCCCTTGGTTGCCTTCCTCGCCTCTCACGTTCCGCTACAGCATCTTCATCTCAACAACAACGGC CTCGGTCCCCACGCCGGTATCCTCATTGCCGACGCTCTGTCCGAGCTTCACGCCAGCAAGGAAGCTGCTCGGAAG GAGGGCAAGGACGTCCCTGACCTCAAGACGATTATATGCGGTAGAAACAGGCTCGAGAATGGCAGCATGACGGCT TGGGCCAAGACGTTTAGCCTGCACAACAAAATTGAAGAGGTCAAGATGGTCCAGAACGGCATCCGCCAGGAGGGC ATCTCTCATCTCCTCAGCCAGGGTCTGAATCACGCCAGCGAGCTGAGGATTCTCGACCTACAGGACAACACGTTT ACTCTCATGGGAGCCAAGGCTCTTGCCAAGGTGACGCCGACCTGGACGTTACTTTCGGAGCTCGGCATTGGCGAT TCTCTGCTCGGCGCTCGGGGCGGCGTGCTGCTTTCCGAGGCTCTCGCCCTCGGCAAGAACGACAAGCTCGAGACG CTGCGCCTGCAGTACAATGACATTACAGCCGTCGGCCTCAGGGGCTTTGCCGCTGCCGCCAAAGACGCCCTGCCG GCACTGAAGCGTATCGAGCTGAACGGCAACAAGTTCTCCGAGGACGATGGCTCGATTCGCGCCCTACAGGAGCTA CTCGAGGAGCGCAAGGAAGCACTTGCCAACGATGACACAGACGAGGCCGACTGGGGCGTTGATAGCCTGAGCGAT CTAGAGAGCGAGGACAGCGACGAGGAAGAGGAGGATGAAGAAGACGAAGAGGATATTGGCCCCGAGGAGAAGGCC GAGAAGCTCGTGAAGGAGGCCGAGGAGGCGCAGGCGGAACCGGTTGTCCAGGTCAAGGACGCCGAAGTAGAGGAA CTGGCCAAGAAGCTGGCCAAGACGAACGTTTGA
Transcript	>Ophun1\|4023 ATGGCAGGCACTGACAAGGTCTTCTCTATCGAGGGCAGAGGCCTGAAGCTCGACACGGCCGCGGATCTCGAGCCT CACGTCGCCCAACTCAGGGCTCACGATGTCGAAGAAGTCCGGCTCTTGGGGAACACGCTTGGCGTTGAGGCCTGC AAGCTTCTAGGAGAGATTTTGGCTACCAAGAAGAACCTCAAGGTTTGCCTCTACTTGCCTGGCTATTATGACCTC GCTGACGTCTGCAAGGTTGCCAACCTCGCCGACATCTTCACCGGCCGACTCCTGTCAGAGATTCCCGACGCTCTT TCTTCCCTCCTCACATCCATTCTCAACCTGCCCCATCTTCACACTATCAATCTCAACGACAACGCTTTCGGTCTC AACACGCAGGCGCCCTTGGTTGCCTTCCTCGCCTCTCACGTTCCGCTACAGCATCTTCATCTCAACAACAACGGC CTCGGTCCCCACGCCGGTATCCTCATTGCCGACGCTCTGTCCGAGCTTCACGCCAGCAAGGAAGCTGCTCGGAAG GAGGGCAAGGACGTCCCTGACCTCAAGACGATTATATGCGGTAGAAACAGGCTCGAGAATGGCAGCATGACGGCT TGGGCCAAGACGTTTAGCCTGCACAACAAAATTGAAGAGGTCAAGATGGTCCAGAACGGCATCCGCCAGGAGGGC ATCTCTCATCTCCTCAGCCAGGGTCTGAATCACGCCAGCGAGCTGAGGATTCTCGACCTACAGGACAACACGTTT ACTCTCATGGGAGCCAAGGCTCTTGCCAAGGTGACGCCGACCTGGACGTTACTTTCGGAGCTCGGCATTGGCGAT TCTCTGCTCGGCGCTCGGGGCGGCGTGCTGCTTTCCGAGGCTCTCGCCCTCGGCAAGAACGACAAGCTCGAGACG CTGCGCCTGCAGTACAATGACATTACAGCCGTCGGCCTCAGGGGCTTTGCCGCTGCCGCCAAAGACGCCCTGCCG GCACTGAAGCGTATCGAGCTGAACGGCAACAAGTTCTCCGAGGACGATGGCTCGATTCGCGCCCTACAGGAGCTA CTCGAGGAGCGCAAGGAAGCACTTGCCAACGATGACACAGACGAGGCCGACTGGGGCGTTGATAGCCTGAGCGAT CTAGAGAGCGAGGACAGCGACGAGGAAGAGGAGGATGAAGAAGACGAAGAGGATATTGGCCCCGAGGAGAAGGCC GAGAAGCTCGTGAAGGAGGCCGAGGAGGCGCAGGCGGAACCGGTTGTCCAGGTCAAGGACGCCGAAGTAGAGGAA CTGGCCAAGAAGCTGGCCAAGACGAACGTTTGA
Gene	>Ophun1\|4023 ATGGCAGGCACTGACAAGGTCTTCTCTATCGAGGGCAGAGGCCTGAAGCTCGACACGGCCGCGGATCTCGAGCCT CACGTCGCCCAACTCAGGGCTCACGATGTCGAAGAAGTCCGGCTCTTGGGGAACACGCTTGGCGTTGAGGCCTGC AAGCTTCTAGGAGAGATTTTGGCTACCAAGAAGAACCTCAAGGTTTGCCTCTACTTGCCTGGCTATTATGACCTC GCTGACGTCTGCAAGGTTGCCAACCTCGCCGACATCTTCACCGGCCGACTCCTGTCAGAGATTCCCGACGCTCTT TCTTCCCTCCTCACATCCATTCTCAACCTGCCCCATCTTCACACTATCAATCTCAACGACAACGCTTTCGGTCTC AACACGCAGGCGCCCTTGGTTGCCTTCCTCGCCTCTCACGTTCCGCTACAGCATCTTCATCTCAACAACAACGGC CTCGGTCCCCACGCCGGTATCCTCATTGCCGACGCTCTGTCCGAGCTTCACGCCAGCAAGGAAGCTGCTCGGAAG GAGGGCAAGGACGTCCCTGACCTCAAGACGATTATATGCGGTAGAAACAGGCTCGAGAATGGCAGCATGACGGCT TGGGCCAAGACGTTTAGCCTGCACAACAAAATTGAAGAGGTCAAGATGGTCCAGAACGGCATCCGCCAGGAGGGC ATCTCTCATCTCCTCAGCCAGGGTCTGAATCACGCCAGCGAGCTGAGGATTCTCGACCTACAGGACAACACGTTT ACTCTCATGGGAGCCAAGGCTCTTGCCAAGGTGACGCCGACCTGGACGTTACTTTCGGAGCTCGGCATTGGCGAT TCTCTGCTCGGCGCTCGGGGCGGCGTGCTGCTTTCCGAGGCTCTCGCCCTCGGCAAGAACGACAAGCTCGAGACG CTGCGCCTGCAGTACAATGACATTACAGCCGTCGGCCTCAGGGGCTTTGCCGCTGCCGCCAAAGACGCCCTGCCG GCACTGAAGCGTATCGAGCTGAACGGCAACAAGTTCTCCGAGGACGATGGCTCGATTCGCGCCCTACAGGAGCTA CTCGAGGAGCGCAAGGAAGCACTTGCCAACGATGACACAGACGAGGCCGACTGGGGCGTTGATAGCCTGAGCGAT CTAGAGAGCGAGGACAGCGACGAGGAAGAGGAGGATGAAGAAGACGAAGAGGATATTGGCCCCGAGGAGAAGGCC GAGAAGCTCGTGAAGGAGGCCGAGGAGGCGCAGGCGGAACCGGTTGTCCAGGTCAAGGACGCCGAAGTAGAGGAA CTGGCCAAGAAGCTGGCCAAGACGAACGTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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