Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|3953
Gene name
LocationContig_359:16048..16711
Strand+
Gene length (bp)663
Transcript length (bp)603
Coding sequence length (bp)603
Protein length (aa) 201

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04900 Fcf1 Fcf1 5.3E-33 97 193
PF18477 PIN_9 PIN like domain 4.3E-10 74 176

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1 1 195 1.0E-79
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 1 198 4.0E-74
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 1 198 4.0E-74
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 1 198 4.0E-74
sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1 1 194 5.0E-74
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Swissprot ID Swissprot Description Start End E-value
sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1 1 195 1.0E-79
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 1 198 4.0E-74
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 1 198 4.0E-74
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 1 198 4.0E-74
sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1 1 194 5.0E-74
sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2 1 198 8.0E-73
sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1 58 195 1.0E-56
sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 71 192 7.0E-13
sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1 61 193 2.0E-12
sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2 61 193 2.0E-12
sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1 61 193 1.0E-11
sp|Q58716|VAPC4_METJA Ribonuclease VapC4 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=vapC4 PE=3 SV=1 72 189 2.0E-08
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1 60 197 2.0E-07
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GO

GO Term Description Terminal node
GO:0032040 small-subunit processome Yes
GO:1990904 ribonucleoprotein complex No
GO:0030684 preribosome No
GO:0005575 cellular_component No
GO:0032991 protein-containing complex No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 49 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|3953
MGVAKKTRKFGQVKRLLGKRDARLKANKEKAEQQVKDAAKTKKTASGELVRTVPQMPSNLFFQHNTALVPPYNVL
VDTNFLSHSVQRKLSLLESMMDCLYAKCNPIITSCVMAELEKLGPKYRLALRVARDERWQRLECDHKGVYADDCL
VDRVTKNRIYIVGTNDKALKQRLRKIPGVPLMSVARGKFVVERLPGAPES*
Coding >Ophun1|3953
ATGGGCGTCGCCAAGAAAACCAGAAAGTTTGGGCAGGTCAAGCGACTCCTCGGGAAGCGCGACGCCAGACTCAAG
GCCAACAAGGAGAAAGCAGAGCAGCAGGTCAAAGACGCAGCCAAGACGAAGAAGACGGCGAGCGGCGAGCTGGTA
CGGACGGTGCCGCAGATGCCGAGCAACCTCTTCTTCCAGCACAACACGGCGCTGGTGCCGCCCTACAACGTCCTC
GTCGACACAAACTTCCTCAGCCACAGCGTTCAGCGCAAGCTCTCGCTCCTCGAGTCCATGATGGACTGCCTCTAC
GCAAAGTGCAACCCCATCATCACCTCGTGCGTCATGGCTGAGCTCGAGAAGCTGGGGCCCAAATATCGGCTGGCG
CTGCGGGTTGCTCGTGATGAGCGGTGGCAGCGGCTGGAGTGTGATCACAAGGGTGTCTATGCGGATGATTGTCTT
GTCGATAGGGTGACGAAGAATCGCATCTATATTGTCGGCACCAACGATAAGGCGCTGAAGCAGCGGCTGCGCAAG
ATCCCTGGCGTGCCGCTTATGAGTGTGGCTCGGGGCAAGTTTGTGGTGGAGAGGCTGCCGGGCGCGCCCGAGTCG
TGA
Transcript >Ophun1|3953
ATGGGCGTCGCCAAGAAAACCAGAAAGTTTGGGCAGGTCAAGCGACTCCTCGGGAAGCGCGACGCCAGACTCAAG
GCCAACAAGGAGAAAGCAGAGCAGCAGGTCAAAGACGCAGCCAAGACGAAGAAGACGGCGAGCGGCGAGCTGGTA
CGGACGGTGCCGCAGATGCCGAGCAACCTCTTCTTCCAGCACAACACGGCGCTGGTGCCGCCCTACAACGTCCTC
GTCGACACAAACTTCCTCAGCCACAGCGTTCAGCGCAAGCTCTCGCTCCTCGAGTCCATGATGGACTGCCTCTAC
GCAAAGTGCAACCCCATCATCACCTCGTGCGTCATGGCTGAGCTCGAGAAGCTGGGGCCCAAATATCGGCTGGCG
CTGCGGGTTGCTCGTGATGAGCGGTGGCAGCGGCTGGAGTGTGATCACAAGGGTGTCTATGCGGATGATTGTCTT
GTCGATAGGGTGACGAAGAATCGCATCTATATTGTCGGCACCAACGATAAGGCGCTGAAGCAGCGGCTGCGCAAG
ATCCCTGGCGTGCCGCTTATGAGTGTGGCTCGGGGCAAGTTTGTGGTGGAGAGGCTGCCGGGCGCGCCCGAGTCG
TGA
Gene >Ophun1|3953
ATGGGCGTCGCCAAGAAAACCAGAAAGTTTGGGCAGGTAAGAAGACGTACCTCGGTTGAAACTCATGTGAATTAC
GCAGCGGCTGACAATCAGTAGGTCAAGCGACTCCTCGGGAAGCGCGACGCCAGACTCAAGGCCAACAAGGAGAAA
GCAGAGCAGCAGGTCAAAGACGCAGCCAAGACGAAGAAGACGGCGAGCGGCGAGCTGGTACGGACGGTGCCGCAG
ATGCCGAGCAACCTCTTCTTCCAGCACAACACGGCGCTGGTGCCGCCCTACAACGTCCTCGTCGACACAAACTTC
CTCAGCCACAGCGTTCAGCGCAAGCTCTCGCTCCTCGAGTCCATGATGGACTGCCTCTACGCAAAGTGCAACCCC
ATCATCACCTCGTGCGTCATGGCTGAGCTCGAGAAGCTGGGGCCCAAATATCGGCTGGCGCTGCGGGTTGCTCGT
GATGAGCGGTGGCAGCGGCTGGAGTGTGATCACAAGGGTGTCTATGCGGATGATTGTCTTGTCGATAGGGTGACG
AAGAATCGCATCTATATTGTCGGCACCAACGATAAGGCGCTGAAGCAGCGGCTGCGCAAGATCCCTGGCGTGCCG
CTTATGAGTGTGGCTCGGGGCAAGTTTGTGGTGGAGAGGCTGCCGGGCGCGCCCGAGTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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