© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|3928 |
| Gene name | |
| Location | Contig_356:5662..8167 |
| Strand | - |
| Gene length (bp) | 2505 |
| Transcript length (bp) | 2448 |
| Coding sequence length (bp) | 2448 |
| Protein length (aa) | 816 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03835 | Rad4 | Rad4 transglutaminase-like domain | 5.2E-30 | 412 | 526 |
| PF10405 | BHD_3 | Rad4 beta-hairpin domain 3 | 3.1E-26 | 660 | 731 |
| PF10403 | BHD_1 | Rad4 beta-hairpin domain 1 | 8.3E-23 | 532 | 587 |
| PF10404 | BHD_2 | Rad4 beta-hairpin domain 2 | 2.1E-17 | 591 | 653 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10445|RHP41_SCHPO | DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 | 171 | 771 | 5.0E-92 |
| sp|P14736|RAD4_YEAST | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 | 417 | 813 | 2.0E-56 |
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 417 | 770 | 7.0E-53 |
| sp|P51612|XPC_MOUSE | DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 | 421 | 770 | 2.0E-47 |
| sp|Q01831|XPC_HUMAN | DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 | 421 | 811 | 9.0E-46 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10445|RHP41_SCHPO | DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 | 171 | 771 | 5.0E-92 |
| sp|P14736|RAD4_YEAST | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 | 417 | 813 | 2.0E-56 |
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 417 | 770 | 7.0E-53 |
| sp|P51612|XPC_MOUSE | DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 | 421 | 770 | 2.0E-47 |
| sp|Q01831|XPC_HUMAN | DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 | 421 | 811 | 9.0E-46 |
| sp|Q24595|XPC_DROME | DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster GN=Xpc PE=1 SV=2 | 421 | 770 | 4.0E-39 |
| sp|Q8W489|RAD4_ARATH | DNA repair protein RAD4 OS=Arabidopsis thaliana GN=RAD4 PE=1 SV=1 | 418 | 770 | 2.0E-29 |
| sp|P14736|RAD4_YEAST | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 | 78 | 329 | 7.0E-15 |
| sp|Q06665|RAD34_YEAST | DNA repair protein RAD34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD34 PE=1 SV=1 | 535 | 770 | 5.0E-11 |
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 149 | 336 | 7.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003676 | nucleic acid binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| Orthofinder run ID | 4 |
| Orthogroup | 3812 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3928 MRNISATWHSSAPDFAMVGQKRAAATRGRRRAGVSADDEEPDVYRQMLDEAGVTAQGPAEETERPLKRRRPGSRQ LNRSPLRKGEESRPLATDTEVEDDDDDEGVEFQDVILPEPTVQTMERESDDEEDDDMAFENEFAKLSNDAQPPEA KDLELNLTVPTTPTKGPAERRRPMTKEEKARRIDIHRTHLLCLLSHLSRRNHWCNDAKVHQTLRPLLSDKTIRYL TPGAHLPQFGQAESLKTGLQQAADIWKTKFEIRERGLRRSLWADDPGQLDGYDPPGDMESCLDRADFRDAARKLQ GSRDVGAQLYCALLRSVGVRARLVCSLQPLACVSGAPSMAKPKEKLRTPSKDKSQEALAKYEAMASRITASSPSG ATARRRLGHPNAAAHDYKPVGRPSPSVGPAFEAPIKIRESHHPVYWVEVLDTGHQKWQPADPLVTDSFWKPRLLE PPSTDKENCLCYVVAMEADGTAKDVTRRYAKAYTAKTRKLRIESTLDDGEKWWSRVMKLYKQRRTTDLDQIEDGE LAGVEAREPMPRNVQDFKDHPVFALQRHLRRNEVLVPEAKPSGTVSAGSRGPLEKIYRRRDVRVARSVDKWFRLG RLVKANEIPAKWLPKKARPRRSLAGDGEPEATDEDDPGTPIYRMDQTELYEPPAVCDGRVPKNKFGNIEVYVPSM IPKGAVHVVGQDVTRAALIAGIDYAPALTGFQFQGRHGTAVLSGVVVAAEFEEALRVLMEGLAQQEQERISEERR LGLLAGWRRLLMGLRIRERIWSGVDSDERREAEKQAELEAGLGSSETTEEMDMEMDDEGGGFLVE* |
| Coding | >Ophun1|3928 ATGCGCAATATTTCGGCCACTTGGCATTCATCAGCTCCCGACTTTGCCATGGTTGGACAGAAACGCGCTGCTGCT ACGAGAGGTCGAAGACGAGCAGGCGTCTCTGCCGACGACGAAGAGCCCGATGTCTACCGCCAGATGCTCGACGAA GCCGGCGTCACAGCCCAAGGCCCTGCCGAGGAGACGGAGAGGCCGCTGAAGCGAAGGCGGCCTGGCTCTCGGCAG TTGAACAGATCGCCACTGCGTAAAGGCGAAGAATCTCGACCGCTCGCGACCGACACCGAGGTCGAAGACGACGAC GACGATGAGGGGGTCGAGTTTCAAGACGTCATCCTGCCGGAGCCTACCGTCCAGACCATGGAGCGCGAATCAGAC GATGAGGAAGACGATGATATGGCGTTTGAGAACGAATTCGCCAAGTTAAGCAACGATGCTCAACCGCCAGAAGCC AAAGACCTCGAGCTCAATCTCACTGTTCCCACGACGCCGACCAAGGGGCCAGCAGAGCGACGGCGACCCATGACC AAGGAGGAAAAGGCACGACGCATAGACATACATCGGACGCATCTCTTGTGCTTGCTGTCGCATCTCTCGCGACGG AATCACTGGTGCAATGACGCCAAGGTGCACCAGACTCTTCGCCCGCTGCTCTCGGACAAGACGATACGCTACCTG ACTCCCGGGGCCCATCTGCCGCAGTTCGGACAGGCCGAGAGCCTCAAAACAGGGCTGCAGCAAGCGGCAGACATA TGGAAGACCAAGTTTGAGATTCGCGAGCGCGGTTTGAGGAGATCGCTATGGGCAGATGATCCCGGGCAACTCGAC GGCTACGATCCGCCCGGCGATATGGAGTCTTGTCTGGACCGTGCCGACTTTCGAGATGCGGCTAGGAAGCTTCAG GGATCCAGAGACGTCGGCGCGCAGCTGTATTGTGCTCTCCTTCGCAGTGTCGGGGTTCGCGCGAGGCTCGTCTGT TCCCTACAGCCTCTTGCCTGCGTATCGGGGGCGCCGTCCATGGCCAAGCCGAAAGAGAAGCTGCGTACGCCAAGC AAAGACAAGTCGCAAGAAGCATTGGCCAAGTACGAGGCCATGGCTAGCAGGATAACCGCGTCGTCTCCGAGCGGA GCCACGGCCAGACGCCGGCTCGGCCATCCGAACGCAGCAGCTCACGACTACAAGCCGGTTGGCCGGCCCTCGCCG TCAGTAGGGCCAGCTTTTGAGGCGCCCATCAAGATACGCGAGTCGCACCATCCCGTCTATTGGGTCGAGGTGCTG GATACAGGCCACCAAAAGTGGCAGCCGGCCGACCCCTTGGTCACGGATAGTTTCTGGAAGCCCAGATTGTTGGAG CCCCCATCCACGGACAAGGAGAATTGTCTCTGCTACGTGGTAGCGATGGAAGCTGATGGGACGGCCAAAGACGTG ACGAGAAGATATGCAAAAGCATACACGGCCAAGACGCGCAAGCTGCGCATCGAGAGCACGCTCGACGACGGAGAA AAGTGGTGGAGCCGAGTCATGAAGCTATATAAGCAAAGACGGACGACGGACCTGGACCAGATCGAGGACGGGGAA CTCGCCGGGGTCGAGGCTCGAGAACCTATGCCGCGGAACGTGCAGGACTTTAAAGACCATCCGGTCTTTGCTCTT CAAAGACACCTGCGGCGCAACGAAGTGCTGGTCCCGGAAGCCAAACCGTCCGGGACCGTCAGCGCCGGGAGCCGG GGTCCTTTGGAGAAGATATACCGGCGCCGGGATGTACGCGTCGCTCGAAGCGTCGACAAGTGGTTCCGTCTGGGA CGGCTGGTCAAGGCCAACGAGATACCGGCCAAGTGGTTGCCCAAGAAAGCTCGGCCCAGACGTTCCTTGGCGGGA GACGGCGAGCCAGAAGCAACGGACGAAGACGACCCTGGAACGCCCATCTACAGGATGGACCAGACGGAGCTGTAC GAGCCACCGGCAGTGTGCGACGGGCGAGTGCCGAAGAACAAGTTTGGCAACATCGAGGTCTACGTGCCCAGCATG ATCCCCAAGGGAGCCGTACATGTTGTCGGACAAGACGTCACGAGGGCGGCCCTGATAGCAGGTATCGATTACGCG CCGGCGCTGACGGGATTCCAGTTCCAGGGCCGCCACGGGACCGCGGTATTGAGCGGAGTTGTGGTGGCGGCGGAG TTTGAAGAGGCGCTGCGGGTGCTGATGGAGGGCCTGGCTCAGCAGGAGCAGGAGCGCATTTCGGAGGAGCGGCGT CTTGGGCTGCTGGCTGGGTGGCGCAGGCTGCTGATGGGGCTGCGGATCCGCGAGAGGATCTGGAGCGGCGTCGAT TCGGACGAGAGGCGCGAAGCCGAGAAGCAGGCCGAACTGGAGGCCGGCTTGGGCTCGAGCGAGACGACGGAAGAG ATGGACATGGAGATGGATGACGAGGGAGGCGGCTTCTTGGTCGAGTAG |
| Transcript | >Ophun1|3928 ATGCGCAATATTTCGGCCACTTGGCATTCATCAGCTCCCGACTTTGCCATGGTTGGACAGAAACGCGCTGCTGCT ACGAGAGGTCGAAGACGAGCAGGCGTCTCTGCCGACGACGAAGAGCCCGATGTCTACCGCCAGATGCTCGACGAA GCCGGCGTCACAGCCCAAGGCCCTGCCGAGGAGACGGAGAGGCCGCTGAAGCGAAGGCGGCCTGGCTCTCGGCAG TTGAACAGATCGCCACTGCGTAAAGGCGAAGAATCTCGACCGCTCGCGACCGACACCGAGGTCGAAGACGACGAC GACGATGAGGGGGTCGAGTTTCAAGACGTCATCCTGCCGGAGCCTACCGTCCAGACCATGGAGCGCGAATCAGAC GATGAGGAAGACGATGATATGGCGTTTGAGAACGAATTCGCCAAGTTAAGCAACGATGCTCAACCGCCAGAAGCC AAAGACCTCGAGCTCAATCTCACTGTTCCCACGACGCCGACCAAGGGGCCAGCAGAGCGACGGCGACCCATGACC AAGGAGGAAAAGGCACGACGCATAGACATACATCGGACGCATCTCTTGTGCTTGCTGTCGCATCTCTCGCGACGG AATCACTGGTGCAATGACGCCAAGGTGCACCAGACTCTTCGCCCGCTGCTCTCGGACAAGACGATACGCTACCTG ACTCCCGGGGCCCATCTGCCGCAGTTCGGACAGGCCGAGAGCCTCAAAACAGGGCTGCAGCAAGCGGCAGACATA TGGAAGACCAAGTTTGAGATTCGCGAGCGCGGTTTGAGGAGATCGCTATGGGCAGATGATCCCGGGCAACTCGAC GGCTACGATCCGCCCGGCGATATGGAGTCTTGTCTGGACCGTGCCGACTTTCGAGATGCGGCTAGGAAGCTTCAG GGATCCAGAGACGTCGGCGCGCAGCTGTATTGTGCTCTCCTTCGCAGTGTCGGGGTTCGCGCGAGGCTCGTCTGT TCCCTACAGCCTCTTGCCTGCGTATCGGGGGCGCCGTCCATGGCCAAGCCGAAAGAGAAGCTGCGTACGCCAAGC AAAGACAAGTCGCAAGAAGCATTGGCCAAGTACGAGGCCATGGCTAGCAGGATAACCGCGTCGTCTCCGAGCGGA GCCACGGCCAGACGCCGGCTCGGCCATCCGAACGCAGCAGCTCACGACTACAAGCCGGTTGGCCGGCCCTCGCCG TCAGTAGGGCCAGCTTTTGAGGCGCCCATCAAGATACGCGAGTCGCACCATCCCGTCTATTGGGTCGAGGTGCTG GATACAGGCCACCAAAAGTGGCAGCCGGCCGACCCCTTGGTCACGGATAGTTTCTGGAAGCCCAGATTGTTGGAG CCCCCATCCACGGACAAGGAGAATTGTCTCTGCTACGTGGTAGCGATGGAAGCTGATGGGACGGCCAAAGACGTG ACGAGAAGATATGCAAAAGCATACACGGCCAAGACGCGCAAGCTGCGCATCGAGAGCACGCTCGACGACGGAGAA AAGTGGTGGAGCCGAGTCATGAAGCTATATAAGCAAAGACGGACGACGGACCTGGACCAGATCGAGGACGGGGAA CTCGCCGGGGTCGAGGCTCGAGAACCTATGCCGCGGAACGTGCAGGACTTTAAAGACCATCCGGTCTTTGCTCTT CAAAGACACCTGCGGCGCAACGAAGTGCTGGTCCCGGAAGCCAAACCGTCCGGGACCGTCAGCGCCGGGAGCCGG GGTCCTTTGGAGAAGATATACCGGCGCCGGGATGTACGCGTCGCTCGAAGCGTCGACAAGTGGTTCCGTCTGGGA CGGCTGGTCAAGGCCAACGAGATACCGGCCAAGTGGTTGCCCAAGAAAGCTCGGCCCAGACGTTCCTTGGCGGGA GACGGCGAGCCAGAAGCAACGGACGAAGACGACCCTGGAACGCCCATCTACAGGATGGACCAGACGGAGCTGTAC GAGCCACCGGCAGTGTGCGACGGGCGAGTGCCGAAGAACAAGTTTGGCAACATCGAGGTCTACGTGCCCAGCATG ATCCCCAAGGGAGCCGTACATGTTGTCGGACAAGACGTCACGAGGGCGGCCCTGATAGCAGGTATCGATTACGCG CCGGCGCTGACGGGATTCCAGTTCCAGGGCCGCCACGGGACCGCGGTATTGAGCGGAGTTGTGGTGGCGGCGGAG TTTGAAGAGGCGCTGCGGGTGCTGATGGAGGGCCTGGCTCAGCAGGAGCAGGAGCGCATTTCGGAGGAGCGGCGT CTTGGGCTGCTGGCTGGGTGGCGCAGGCTGCTGATGGGGCTGCGGATCCGCGAGAGGATCTGGAGCGGCGTCGAT TCGGACGAGAGGCGCGAAGCCGAGAAGCAGGCCGAACTGGAGGCCGGCTTGGGCTCGAGCGAGACGACGGAAGAG ATGGACATGGAGATGGATGACGAGGGAGGCGGCTTCTTGGTCGAGTAG |
| Gene | >Ophun1|3928 ATGCGCAATATTTCGGCCACTTGGCATTCATCAGCTCCCGACTTTGCCATGGTTGGACAGAAACGCGCTGCTGCT ACGAGAGGTCGAAGACGAGCAGGCGTCTCTGCCGACGACGAAGAGCCCGATGTCTACCGCCAGATGCTCGACGAA GCCGGCGTCACAGCCCAAGGCCCTGCCGAGGAGACGGAGAGGCCGCTGAAGCGAAGGCGGCCTGGCTCTCGGCAG TTGAACAGATCGCCACTGCGTAAAGGCGAAGAATCTCGACCGCTCGCGACCGACACCGAGGTCGAAGACGACGAC GACGATGAGGGGGTCGAGTTTCAAGACGTCATCCTGCCGGAGCCTACCGTCCAGACCATGGAGCGCGAATCAGAC GATGAGGAAGACGATGATATGGCGTTTGAGAACGAATTCGCCAAGTTAAGCAACGATGCTCAACCGCCAGAAGCC AAAGACCTCGAGCTCAATCTCACTGTTCCCACGACGCCGACCAAGGGGCCAGCAGAGCGACGGCGACCCATGACC AAGGAGGAAAAGGCACGACGCATAGACATACATCGGACGCATCTCTTGTGCTTGCTGTCGCATCTCTCGCGACGG AATCACTGGTGCAATGACGCCAAGGTGCACCAGACTCTTCGCCCGCTGCTCTCGGACAAGACGATACGCTACCTG ACTCCCGGGGCCCATCTGCCGCAGTTCGGACAGGCCGAGAGCCTCAAAACAGGGCTGCAGCAAGCGGCAGACATA TGGAAGACCAAGTTTGAGATTCGCGAGCGCGGTTTGAGGAGATCGCTATGGGCAGATGATCCCGGGCAACTCGAC GGCGTGAGCGTCTGCGCAATCCCCCACCCTACTGAAAAGAAGCGCTGACGCAACCGCCAGTACGATCCGCCCGGC GATATGGAGTCTTGTCTGGACCGTGCCGACTTTCGAGATGCGGCTAGGAAGCTTCAGGGATCCAGAGACGTCGGC GCGCAGCTGTATTGTGCTCTCCTTCGCAGTGTCGGGGTTCGCGCGAGGCTCGTCTGTTCCCTACAGCCTCTTGCC TGCGTATCGGGGGCGCCGTCCATGGCCAAGCCGAAAGAGAAGCTGCGTACGCCAAGCAAAGACAAGTCGCAAGAA GCATTGGCCAAGTACGAGGCCATGGCTAGCAGGATAACCGCGTCGTCTCCGAGCGGAGCCACGGCCAGACGCCGG CTCGGCCATCCGAACGCAGCAGCTCACGACTACAAGCCGGTTGGCCGGCCCTCGCCGTCAGTAGGGCCAGCTTTT GAGGCGCCCATCAAGATACGCGAGTCGCACCATCCCGTCTATTGGGTCGAGGTGCTGGATACAGGCCACCAAAAG TGGCAGCCGGCCGACCCCTTGGTCACGGATAGTTTCTGGAAGCCCAGATTGTTGGAGCCCCCATCCACGGACAAG GAGAATTGTCTCTGCTACGTGGTAGCGATGGAAGCTGATGGGACGGCCAAAGACGTGACGAGAAGATATGCAAAA GCATACACGGCCAAGACGCGCAAGCTGCGCATCGAGAGCACGCTCGACGACGGAGAAAAGTGGTGGAGCCGAGTC ATGAAGCTATATAAGCAAAGACGGACGACGGACCTGGACCAGATCGAGGACGGGGAACTCGCCGGGGTCGAGGCT CGAGAACCTATGCCGCGGAACGTGCAGGACTTTAAAGACCATCCGGTCTTTGCTCTTCAAAGACACCTGCGGCGC AACGAAGTGCTGGTCCCGGAAGCCAAACCGTCCGGGACCGTCAGCGCCGGGAGCCGGGGTCCTTTGGAGAAGATA TACCGGCGCCGGGATGTACGCGTCGCTCGAAGCGTCGACAAGTGGTTCCGTCTGGGACGGCTGGTCAAGGCCAAC GAGATACCGGCCAAGTGGTTGCCCAAGAAAGCTCGGCCCAGACGTTCCTTGGCGGGAGACGGCGAGCCAGAAGCA ACGGACGAAGACGACCCTGGAACGCCCATCTACAGGATGGACCAGACGGAGCTGTACGAGCCACCGGCAGTGTGC GACGGGCGAGTGCCGAAGAACAAGTTTGGCAACATCGAGGTCTACGTGCCCAGCATGATCCCCAAGGGAGCCGTA CATGTTGTCGGACAAGACGTCACGAGGGCGGCCCTGATAGCAGGTATCGATTACGCGCCGGCGCTGACGGGATTC CAGTTCCAGGGCCGCCACGGGACCGCGGTATTGAGCGGAGTTGTGGTGGCGGCGGAGTTTGAAGAGGCGCTGCGG GTGCTGATGGAGGGCCTGGCTCAGCAGGAGCAGGAGCGCATTTCGGAGGAGCGGCGTCTTGGGCTGCTGGCTGGG TGGCGCAGGCTGCTGATGGGGCTGCGGATCCGCGAGAGGATCTGGAGCGGCGTCGATTCGGACGAGAGGCGCGAA GCCGAGAAGCAGGCCGAACTGGAGGCCGGCTTGGGCTCGAGCGAGACGACGGAAGAGATGGACATGGAGATGGAT GACGAGGGAGGCGGCTTCTTGGTCGAGTAG |