© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3869 |
| Gene name | |
| Location | Contig_35:13993..16001 |
| Strand | - |
| Gene length (bp) | 2008 |
| Transcript length (bp) | 1944 |
| Coding sequence length (bp) | 1944 |
| Protein length (aa) | 648 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17004 | SRP_TPR_like | Putative TPR-like repeat | 4.9E-23 | 19 | 149 |
| PF08492 | SRP72 | SRP72 RNA-binding domain | 3.2E-16 | 545 | 594 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O76094|SRP72_HUMAN | Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3 | 7 | 590 | 1.0E-43 |
| sp|P33731|SRP72_CANLF | Signal recognition particle subunit SRP72 OS=Canis lupus familiaris GN=SRP72 PE=1 SV=3 | 7 | 590 | 5.0E-43 |
| sp|O59787|SRP72_SCHPO | Signal recognition particle subunit srp72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp72 PE=3 SV=1 | 45 | 610 | 2.0E-35 |
| sp|P91240|SRP72_CAEEL | Signal recognition particle subunit SRP72 OS=Caenorhabditis elegans GN=srpa-72 PE=3 SV=2 | 8 | 609 | 6.0E-31 |
| sp|Q54EP7|SRP72_DICDI | Signal recognition particle subunit SRP72 OS=Dictyostelium discoideum GN=srp72 PE=3 SV=1 | 1 | 609 | 8.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O76094|SRP72_HUMAN | Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3 | 7 | 590 | 1.0E-43 |
| sp|P33731|SRP72_CANLF | Signal recognition particle subunit SRP72 OS=Canis lupus familiaris GN=SRP72 PE=1 SV=3 | 7 | 590 | 5.0E-43 |
| sp|O59787|SRP72_SCHPO | Signal recognition particle subunit srp72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp72 PE=3 SV=1 | 45 | 610 | 2.0E-35 |
| sp|P91240|SRP72_CAEEL | Signal recognition particle subunit SRP72 OS=Caenorhabditis elegans GN=srpa-72 PE=3 SV=2 | 8 | 609 | 6.0E-31 |
| sp|Q54EP7|SRP72_DICDI | Signal recognition particle subunit SRP72 OS=Dictyostelium discoideum GN=srp72 PE=3 SV=1 | 1 | 609 | 8.0E-15 |
| sp|P49965|SRP72_SCHMA | Signal recognition particle subunit SRP72 OS=Schistosoma mansoni GN=SRP72 PE=3 SV=1 | 7 | 320 | 1.0E-13 |
| sp|P38688|SRP72_YEAST | Signal recognition particle subunit SRP72 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP72 PE=1 SV=2 | 522 | 624 | 6.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008312 | 7S RNA binding | Yes |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | Yes |
| GO:0048500 | signal recognition particle | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0033365 | protein localization to organelle | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0006612 | protein targeting to membrane | No |
| GO:0072599 | establishment of protein localization to endoplasmic reticulum | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0006613 | cotranslational protein targeting to membrane | No |
| GO:0032991 | protein-containing complex | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0070972 | protein localization to endoplasmic reticulum | No |
| GO:0051179 | localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0045047 | protein targeting to ER | No |
| GO:0090150 | establishment of protein localization to membrane | No |
| GO:0008104 | protein localization | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0006886 | intracellular protein transport | No |
| GO:0071702 | organic substance transport | No |
| GO:0051668 | localization within membrane | No |
| GO:0051641 | cellular localization | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0072657 | protein localization to membrane | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0033036 | macromolecule localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0006605 | protein targeting | No |
| GO:0003674 | molecular_function | No |
| GO:0003723 | RNA binding | No |
| GO:0015031 | protein transport | No |
| GO:0005575 | cellular_component | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0072594 | establishment of protein localization to organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3869 MAPDAAAALSALLRSASLDDHDEILKAANAAIKANKSNQVAQRTRVVALLKLDRFQDAIDAIREGGEKLEAVCHL EKAYSLYKTGQLDEASAVIDSAGSDTRSLKHVAAQVSYRAERFSEAESIYRHLMDAGVAHEGNDLSINIKAAQAQ SVWQKSASASFDDAQASLDTFEICYNTACAHIARGSLETASELLARAVDLCRASDDLTQEDQDAELQPILAQQAY VYGRLGDVDKALNVYQSLQSLKNDDPDSFVVAESNRTALLSGKTNPYLVQRRATAWMNGAASAKLFRYQSNAILR NSLLVDLEAHKTDGVEHRTRKMLNSARHSSTSPETTAMSVINVAAQTKGLRKNELRRKVADMLKKSPDSVALVIL MIQLLVRDDKIESAMSLLETFFARLEASDNDKDKDIRFSPGLVALAVSLMKAKKREASIKTELTKAATYWRERPL ALSASLLREAGLELAKSSDPADLSLAAAALGRLHDEDKASPLVAAGLTAALATTDASQIEQLTATLPPVESLITS IDIDALASAGIVTPASQATTTSKRPAPDAAEGTTKKRRRRTRLPKNMEEGKTPDPERWLPLRDRSSYRPKGKKGK KKAAESTQGGPVKQEETLELVGGGGVKVEKTGGAVSSAKKKKKKGKK* |
| Coding | >Ophun1|3869 ATGGCTCCGGACGCCGCCGCCGCCCTCAGCGCTCTGCTGCGGTCCGCTTCTCTCGACGACCATGACGAGATTCTC AAGGCGGCCAACGCAGCCATCAAGGCCAACAAGAGCAACCAAGTCGCTCAGCGCACCCGCGTCGTCGCGCTGCTG AAGCTCGACCGCTTCCAGGACGCCATCGATGCCATTCGCGAAGGAGGCGAAAAGCTTGAGGCCGTCTGTCATCTC GAAAAGGCGTACTCTCTCTACAAAACGGGTCAGCTTGACGAAGCTTCGGCTGTTATCGACTCGGCAGGATCCGAC ACGAGGAGCCTCAAGCATGTTGCTGCCCAGGTATCCTACCGCGCCGAGAGGTTCAGTGAGGCCGAATCCATATAC CGCCACCTGATGGATGCCGGTGTGGCCCACGAGGGCAACGATCTGAGCATCAACATCAAGGCCGCCCAGGCCCAG TCCGTGTGGCAAAAGTCCGCATCCGCCTCGTTCGATGACGCTCAAGCCAGTCTCGATACTTTCGAAATCTGCTAC AACACTGCATGTGCTCACATTGCCCGCGGATCCCTCGAGACCGCATCGGAGCTTCTGGCGCGCGCCGTCGACCTG TGCAGAGCCTCAGATGACCTGACACAAGAAGACCAAGATGCTGAGCTGCAGCCTATACTTGCGCAGCAAGCCTAC GTCTACGGTCGCTTAGGCGATGTCGACAAGGCTTTGAACGTCTATCAATCACTCCAATCGCTGAAAAATGACGAC CCGGATTCGTTCGTCGTGGCCGAGAGCAACCGAACCGCCCTGCTAAGTGGCAAAACCAATCCCTACCTGGTCCAA CGACGAGCCACGGCCTGGATGAACGGCGCTGCATCAGCCAAGCTTTTCCGCTACCAATCCAACGCAATCTTGCGC AATTCCCTCCTAGTAGACCTTGAAGCGCACAAGACCGATGGAGTCGAGCACAGGACACGCAAGATGCTGAATTCG GCGCGGCACTCATCCACGAGCCCTGAGACGACTGCCATGTCCGTCATCAATGTCGCTGCTCAGACAAAAGGGCTC AGGAAGAACGAGTTGCGCCGAAAGGTAGCCGACATGCTGAAGAAGAGCCCAGACAGCGTTGCTCTCGTCATCCTT ATGATACAGCTTCTCGTACGGGACGACAAGATCGAGTCGGCCATGTCCTTACTGGAGACATTCTTCGCCCGACTC GAAGCATCTGACAACGACAAGGACAAAGACATCCGCTTCAGCCCAGGCCTCGTGGCTCTGGCGGTGTCCTTGATG AAGGCAAAGAAAAGAGAGGCCTCGATCAAAACCGAACTAACCAAGGCAGCGACCTACTGGCGCGAGAGGCCGCTG GCTTTGTCTGCCTCACTCCTGAGAGAAGCTGGCTTGGAACTGGCCAAATCATCGGACCCTGCCGATCTCTCCCTC GCCGCTGCGGCCCTCGGACGACTTCACGATGAGGACAAAGCCTCGCCCCTCGTCGCGGCCGGGCTTACAGCAGCG CTGGCCACGACGGACGCGTCACAGATCGAGCAGCTCACCGCCACCCTGCCACCCGTCGAAAGCCTCATCACCAGC ATAGACATCGACGCCCTCGCCAGCGCAGGAATCGTCACACCCGCCTCGCAAGCAACCACAACCTCCAAGCGCCCC GCCCCCGACGCCGCCGAAGGCACCACCAAGAAGCGCAGACGGCGCACCAGGCTGCCCAAGAATATGGAAGAGGGC AAGACGCCCGATCCCGAGCGCTGGCTGCCCCTCCGCGACCGCTCATCCTACCGTCCCAAGGGCAAGAAGGGCAAG AAGAAGGCGGCTGAGTCGACGCAGGGCGGCCCCGTCAAGCAGGAGGAGACGCTTGAGCTCGTCGGTGGGGGGGGT GTCAAGGTTGAGAAGACGGGCGGGGCGGTGAGCTCGGCGAAGAAGAAGAAGAAGAAGGGGAAGAAATAG |
| Transcript | >Ophun1|3869 ATGGCTCCGGACGCCGCCGCCGCCCTCAGCGCTCTGCTGCGGTCCGCTTCTCTCGACGACCATGACGAGATTCTC AAGGCGGCCAACGCAGCCATCAAGGCCAACAAGAGCAACCAAGTCGCTCAGCGCACCCGCGTCGTCGCGCTGCTG AAGCTCGACCGCTTCCAGGACGCCATCGATGCCATTCGCGAAGGAGGCGAAAAGCTTGAGGCCGTCTGTCATCTC GAAAAGGCGTACTCTCTCTACAAAACGGGTCAGCTTGACGAAGCTTCGGCTGTTATCGACTCGGCAGGATCCGAC ACGAGGAGCCTCAAGCATGTTGCTGCCCAGGTATCCTACCGCGCCGAGAGGTTCAGTGAGGCCGAATCCATATAC CGCCACCTGATGGATGCCGGTGTGGCCCACGAGGGCAACGATCTGAGCATCAACATCAAGGCCGCCCAGGCCCAG TCCGTGTGGCAAAAGTCCGCATCCGCCTCGTTCGATGACGCTCAAGCCAGTCTCGATACTTTCGAAATCTGCTAC AACACTGCATGTGCTCACATTGCCCGCGGATCCCTCGAGACCGCATCGGAGCTTCTGGCGCGCGCCGTCGACCTG TGCAGAGCCTCAGATGACCTGACACAAGAAGACCAAGATGCTGAGCTGCAGCCTATACTTGCGCAGCAAGCCTAC GTCTACGGTCGCTTAGGCGATGTCGACAAGGCTTTGAACGTCTATCAATCACTCCAATCGCTGAAAAATGACGAC CCGGATTCGTTCGTCGTGGCCGAGAGCAACCGAACCGCCCTGCTAAGTGGCAAAACCAATCCCTACCTGGTCCAA CGACGAGCCACGGCCTGGATGAACGGCGCTGCATCAGCCAAGCTTTTCCGCTACCAATCCAACGCAATCTTGCGC AATTCCCTCCTAGTAGACCTTGAAGCGCACAAGACCGATGGAGTCGAGCACAGGACACGCAAGATGCTGAATTCG GCGCGGCACTCATCCACGAGCCCTGAGACGACTGCCATGTCCGTCATCAATGTCGCTGCTCAGACAAAAGGGCTC AGGAAGAACGAGTTGCGCCGAAAGGTAGCCGACATGCTGAAGAAGAGCCCAGACAGCGTTGCTCTCGTCATCCTT ATGATACAGCTTCTCGTACGGGACGACAAGATCGAGTCGGCCATGTCCTTACTGGAGACATTCTTCGCCCGACTC GAAGCATCTGACAACGACAAGGACAAAGACATCCGCTTCAGCCCAGGCCTCGTGGCTCTGGCGGTGTCCTTGATG AAGGCAAAGAAAAGAGAGGCCTCGATCAAAACCGAACTAACCAAGGCAGCGACCTACTGGCGCGAGAGGCCGCTG GCTTTGTCTGCCTCACTCCTGAGAGAAGCTGGCTTGGAACTGGCCAAATCATCGGACCCTGCCGATCTCTCCCTC GCCGCTGCGGCCCTCGGACGACTTCACGATGAGGACAAAGCCTCGCCCCTCGTCGCGGCCGGGCTTACAGCAGCG CTGGCCACGACGGACGCGTCACAGATCGAGCAGCTCACCGCCACCCTGCCACCCGTCGAAAGCCTCATCACCAGC ATAGACATCGACGCCCTCGCCAGCGCAGGAATCGTCACACCCGCCTCGCAAGCAACCACAACCTCCAAGCGCCCC GCCCCCGACGCCGCCGAAGGCACCACCAAGAAGCGCAGACGGCGCACCAGGCTGCCCAAGAATATGGAAGAGGGC AAGACGCCCGATCCCGAGCGCTGGCTGCCCCTCCGCGACCGCTCATCCTACCGTCCCAAGGGCAAGAAGGGCAAG AAGAAGGCGGCTGAGTCGACGCAGGGCGGCCCCGTCAAGCAGGAGGAGACGCTTGAGCTCGTCGGTGGGGGGGGT GTCAAGGTTGAGAAGACGGGCGGGGCGGTGAGCTCGGCGAAGAAGAAGAAGAAGAAGGGGAAGAAATAG |
| Gene | >Ophun1|3869 ATGGCTCCGGACGCCGCCGCCGCCCTCAGCGCTCTGCTGCGGTCCGCTTCTCTCGACGACCATGACGAGATTCTC AAGGCGGCCAACGCAGCCATCAAGGCCAACAAGAGCAACCAAGTCGCTCAGCGCACCCGCGTCGTCGCGCTGCTG AAGCTCGACCGCTTCCAGGACGCCATCGATGCCATTCGCGAAGGAGGCGAAAAGCTTGAGGCCGTCTGTCATCTC GAAAAGGCGTACTCTCTCTACAAAACGGGTCAGCTTGACGAAGCTTCGGCTGTTATCGACTCGGCAGGATCCGAC ACGAGGAGCCTCAAGCATGTTGCTGCCCAGGTATCCTACCGCGCCGAGAGGTTCAGTGAGGCCGAATCCATATAC CGCCACCTGATGGATGCCGGTGTGGCCCACGAGGGCAACGATCTGAGCATCAACATCAAGGCCGCCCAGGCCCAG TCCGTGTGGCAAAAGTCCGCATCCGCCTCGTTCGATGACGCTCAAGCCAGTCTCGATACTTTCGAAATCTGCTAC AACACTGCATGTGCTCACATTGCCCGCGGATCCCTCGAGACCGCATCGGAGCTTCTGGCGCGCGCCGTCGACCTG TGCAGAGCCTCAGATGACCTGACACAAGAAGACCAAGATGCTGAGCTGCAGCCTATACTTGCGCAGCAAGCCTAC GTCTACGGTCGCTTAGGCGATGTCGACAAGGCTTTGAACGTCTATCAATCACTCCAATCGCTGAAGTGAGTCGTC GTCTTCACCACTGTTCCCTCGCCCTGGACCAGGCTAACCACTTCGTCCTCCAAGAAATGACGACCCGGATTCGTT CGTCGTGGCCGAGAGCAACCGAACCGCCCTGCTAAGTGGCAAAACCAATCCCTACCTGGTCCAACGACGAGCCAC GGCCTGGATGAACGGCGCTGCATCAGCCAAGCTTTTCCGCTACCAATCCAACGCAATCTTGCGCAATTCCCTCCT AGTAGACCTTGAAGCGCACAAGACCGATGGAGTCGAGCACAGGACACGCAAGATGCTGAATTCGGCGCGGCACTC ATCCACGAGCCCTGAGACGACTGCCATGTCCGTCATCAATGTCGCTGCTCAGACAAAAGGGCTCAGGAAGAACGA GTTGCGCCGAAAGGTAGCCGACATGCTGAAGAAGAGCCCAGACAGCGTTGCTCTCGTCATCCTTATGATACAGCT TCTCGTACGGGACGACAAGATCGAGTCGGCCATGTCCTTACTGGAGACATTCTTCGCCCGACTCGAAGCATCTGA CAACGACAAGGACAAAGACATCCGCTTCAGCCCAGGCCTCGTGGCTCTGGCGGTGTCCTTGATGAAGGCAAAGAA AAGAGAGGCCTCGATCAAAACCGAACTAACCAAGGCAGCGACCTACTGGCGCGAGAGGCCGCTGGCTTTGTCTGC CTCACTCCTGAGAGAAGCTGGCTTGGAACTGGCCAAATCATCGGACCCTGCCGATCTCTCCCTCGCCGCTGCGGC CCTCGGACGACTTCACGATGAGGACAAAGCCTCGCCCCTCGTCGCGGCCGGGCTTACAGCAGCGCTGGCCACGAC GGACGCGTCACAGATCGAGCAGCTCACCGCCACCCTGCCACCCGTCGAAAGCCTCATCACCAGCATAGACATCGA CGCCCTCGCCAGCGCAGGAATCGTCACACCCGCCTCGCAAGCAACCACAACCTCCAAGCGCCCCGCCCCCGACGC CGCCGAAGGCACCACCAAGAAGCGCAGACGGCGCACCAGGCTGCCCAAGAATATGGAAGAGGGCAAGACGCCCGA TCCCGAGCGCTGGCTGCCCCTCCGCGACCGCTCATCCTACCGTCCCAAGGGCAAGAAGGGCAAGAAGAAGGCGGC TGAGTCGACGCAGGGCGGCCCCGTCAAGCAGGAGGAGACGCTTGAGCTCGTCGGTGGGGGGGGTGTCAAGGTTGA GAAGACGGGCGGGGCGGTGAGCTCGGCGAAGAAGAAGAAGAAGAAGGGGAAGAAATAG |