Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|3809
Gene name
LocationContig_341:16546..17101
Strand+
Gene length (bp)555
Transcript length (bp)555
Coding sequence length (bp)555
Protein length (aa) 185

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14856 Hce2 Pathogen effector; putative necrosis-inducing factor 6.9E-12 48 147

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|3809
MAPSATHTLVLFALVSSPIVHAVSLSGLAPFNNITGVSWSTSQAALSTCDPATFAYDLSLDAADWRQCAALHSEW
TTEKGFFRVARPDGRAYLPIVGETDCSLAVEPLSPLLGPYIIGNKDIENILFKSLHDFSRGTLLAVNGTVKCDTG
NGERAPLAWKISKAAGPALRRIALAKRVAVKMRA*
Coding >Ophun1|3809
ATGGCTCCATCAGCCACGCACACGCTCGTTCTCTTCGCCCTCGTCTCTTCGCCCATCGTTCATGCCGTCTCTCTT
TCCGGCCTTGCTCCCTTTAACAACATCACGGGCGTATCCTGGAGCACCTCGCAAGCCGCCCTCAGCACCTGCGAT
CCGGCCACATTTGCCTACGACCTCAGCCTCGACGCCGCAGACTGGCGCCAGTGCGCCGCCCTACATAGCGAGTGG
ACGACAGAAAAGGGCTTCTTCCGCGTCGCCAGACCCGATGGAAGGGCCTACCTTCCCATAGTCGGAGAGACAGAC
TGCTCGCTCGCCGTCGAGCCCTTGAGTCCGCTCCTGGGCCCTTATATCATCGGCAACAAGGACATCGAGAATATC
TTGTTCAAGAGCCTGCACGATTTTTCACGCGGTACCCTGCTGGCCGTCAACGGAACCGTCAAGTGCGACACTGGC
AACGGCGAACGCGCCCCCTTGGCCTGGAAAATCTCCAAGGCTGCTGGCCCGGCTCTCCGTCGAATCGCCTTGGCG
AAGCGCGTGGCCGTCAAGATGCGTGCCTGA
Transcript >Ophun1|3809
ATGGCTCCATCAGCCACGCACACGCTCGTTCTCTTCGCCCTCGTCTCTTCGCCCATCGTTCATGCCGTCTCTCTT
TCCGGCCTTGCTCCCTTTAACAACATCACGGGCGTATCCTGGAGCACCTCGCAAGCCGCCCTCAGCACCTGCGAT
CCGGCCACATTTGCCTACGACCTCAGCCTCGACGCCGCAGACTGGCGCCAGTGCGCCGCCCTACATAGCGAGTGG
ACGACAGAAAAGGGCTTCTTCCGCGTCGCCAGACCCGATGGAAGGGCCTACCTTCCCATAGTCGGAGAGACAGAC
TGCTCGCTCGCCGTCGAGCCCTTGAGTCCGCTCCTGGGCCCTTATATCATCGGCAACAAGGACATCGAGAATATC
TTGTTCAAGAGCCTGCACGATTTTTCACGCGGTACCCTGCTGGCCGTCAACGGAACCGTCAAGTGCGACACTGGC
AACGGCGAACGCGCCCCCTTGGCCTGGAAAATCTCCAAGGCTGCTGGCCCGGCTCTCCGTCGAATCGCCTTGGCG
AAGCGCGTGGCCGTCAAGATGCGTGCCTGA
Gene >Ophun1|3809
ATGGCTCCATCAGCCACGCACACGCTCGTTCTCTTCGCCCTCGTCTCTTCGCCCATCGTTCATGCCGTCTCTCTT
TCCGGCCTTGCTCCCTTTAACAACATCACGGGCGTATCCTGGAGCACCTCGCAAGCCGCCCTCAGCACCTGCGAT
CCGGCCACATTTGCCTACGACCTCAGCCTCGACGCCGCAGACTGGCGCCAGTGCGCCGCCCTACATAGCGAGTGG
ACGACAGAAAAGGGCTTCTTCCGCGTCGCCAGACCCGATGGAAGGGCCTACCTTCCCATAGTCGGAGAGACAGAC
TGCTCGCTCGCCGTCGAGCCCTTGAGTCCGCTCCTGGGCCCTTATATCATCGGCAACAAGGACATCGAGAATATC
TTGTTCAAGAGCCTGCACGATTTTTCACGCGGTACCCTGCTGGCCGTCAACGGAACCGTCAAGTGCGACACTGGC
AACGGCGAACGCGCCCCCTTGGCCTGGAAAATCTCCAAGGCTGCTGGCCCGGCTCTCCGTCGAATCGCCTTGGCG
AAGCGCGTGGCCGTCAAGATGCGTGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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