© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3793 |
| Gene name | |
| Location | Contig_34:55469..57648 |
| Strand | + |
| Gene length (bp) | 2179 |
| Transcript length (bp) | 1674 |
| Coding sequence length (bp) | 1674 |
| Protein length (aa) | 558 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13092 | CENP-L | Kinetochore complex Sim4 subunit Fta1 | 1.1E-42 | 151 | 349 |
| PF01212 | Beta_elim_lyase | Beta-eliminating lyase | 9.3E-17 | 410 | 539 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O50584|LTAE_PSEUN | Low specificity L-threonine aldolase OS=Pseudomonas sp. (strain NCIMB 10558) GN=ltaE PE=1 SV=1 | 401 | 556 | 7.0E-16 |
| sp|Q9HTF1|LTAE_PSEAE | Low specificity L-threonine aldolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ltaE PE=3 SV=1 | 401 | 556 | 2.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006520 | cellular amino acid metabolic process | Yes |
| GO:0016829 | lyase activity | Yes |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3793 MATNGVDAEPAPPFFNTTFSTHSVSPLYIGPEGLPPVRLDLLARRLRDTLVGDVVRGIQVAVEATNTPSGQVGSL RNVAIRRFELRTILGEGPLVADDAQDESRPGGIWIEISHERAAYAAVLLPGLASSSSRPSTTVQFGRKEADVDAS QFLHLPLLLLRMPQSLRAVVCEWLSTTFDCRVRKLSLGTRTLVSVMEDWLDVVGLPAKGPDLILSLGFNVPLVEP ATTEDGEGDTTMMDDDGDAAGLRVLEVTMTSSDVSRFRRYGLAHGAFKSRWETSGDERQRRRLAGGNVDDGWAWR GASTRQPLMEGLARYLDGHLALDVFHPGVRVVQVSCGSFVLAPSRLKLVKGREEADEASDVGARLKRRTCNVEGL GLYLRQVGRRRVLRLVLGIIASGFLDDYSEGAHPQVLSALGATNTSQEAGYGADRYSAEARLHLRRHLGHDDAHI FFVPSGTAANAISIAACLRPHEAVIAATSGHIVTRETGAVEASGHKIITVPPCNGKLTVDGIDKALAENWHFPHM ARPRLVYVSNATEAGPRTAPSSAKPSSSKTQA* |
| Coding | >Ophun1|3793 ATGGCAACAAACGGCGTCGACGCCGAGCCGGCTCCTCCCTTCTTCAACACGACCTTTTCTACTCACAGCGTGTCG CCGCTATACATCGGTCCCGAAGGCCTGCCGCCCGTGCGACTCGATCTTCTGGCGAGGCGGCTACGCGATACGCTG GTCGGGGACGTGGTTCGGGGCATCCAGGTGGCGGTCGAGGCGACGAATACGCCGTCTGGTCAGGTGGGATCCTTG CGGAATGTTGCTATCCGACGGTTCGAGCTGCGGACCATCTTGGGAGAGGGGCCGTTGGTAGCGGATGACGCGCAA GATGAGAGCAGACCAGGCGGGATCTGGATCGAAATCAGCCACGAAAGGGCAGCATACGCCGCTGTCCTTTTACCC GGACTGGCTTCATCGTCTAGCCGACCGTCGACGACGGTGCAATTTGGAAGAAAGGAGGCGGACGTGGACGCCAGT CAATTCCTGCATCTGCCTCTGCTGCTGCTACGGATGCCGCAGTCGTTACGAGCCGTCGTGTGCGAATGGCTATCG ACAACGTTTGACTGCCGCGTCAGAAAGCTTTCGCTGGGGACACGAACGCTGGTCAGCGTCATGGAGGACTGGCTA GACGTGGTCGGTCTACCAGCAAAAGGGCCCGATCTAATTCTCAGCCTCGGCTTCAACGTGCCGCTCGTGGAACCA GCAACGACGGAAGACGGCGAAGGCGATACGACCATGATGGACGACGACGGCGACGCAGCGGGACTACGCGTGTTG GAGGTGACGATGACCTCTTCCGACGTCAGCCGATTCCGACGCTACGGACTGGCGCACGGCGCGTTCAAGAGTCGA TGGGAGACGAGCGGCGATGAGCGGCAACGGCGCAGACTGGCGGGCGGCAACGTCGACGACGGATGGGCGTGGAGG GGAGCTTCGACGAGGCAGCCGTTGATGGAGGGTCTGGCGCGGTATCTCGACGGGCATCTGGCGCTGGACGTGTTC CATCCCGGGGTGCGGGTGGTGCAGGTTTCTTGCGGGTCGTTTGTGCTGGCGCCTTCGCGGTTGAAGCTGGTCAAG GGGAGGGAGGAAGCGGATGAAGCGAGCGATGTCGGCGCGAGGCTTAAGAGAAGGACCTGCAACGTCGAAGGCCTT GGCTTGTATCTCAGGCAGGTAGGCAGGAGACGGGTTCTGAGACTTGTGCTGGGCATCATTGCATCCGGCTTCCTC GACGACTACAGCGAAGGCGCCCACCCCCAAGTCCTCTCCGCCCTCGGCGCCACAAACACCAGCCAAGAAGCCGGC TACGGAGCCGACCGCTACAGCGCCGAAGCCCGCCTGCACCTCCGCCGCCACCTCGGCCACGACGACGCCCACATC TTCTTCGTCCCCAGCGGAACAGCCGCCAACGCAATCTCCATCGCCGCCTGTCTGCGTCCGCACGAGGCCGTCATC GCCGCCACCTCGGGCCACATCGTGACGCGCGAGACGGGCGCCGTGGAAGCCAGCGGCCACAAGATCATCACGGTG CCGCCCTGTAACGGCAAGTTGACGGTCGACGGCATTGACAAGGCCCTGGCGGAGAATTGGCATTTCCCGCACATG GCTAGGCCGAGGCTCGTCTATGTTTCGAACGCTACAGAGGCGGGACCAAGAACGGCGCCCTCCTCGGCGAAGCCA TCGTCGTCAAAGACGCAAGCCTAG |
| Transcript | >Ophun1|3793 ATGGCAACAAACGGCGTCGACGCCGAGCCGGCTCCTCCCTTCTTCAACACGACCTTTTCTACTCACAGCGTGTCG CCGCTATACATCGGTCCCGAAGGCCTGCCGCCCGTGCGACTCGATCTTCTGGCGAGGCGGCTACGCGATACGCTG GTCGGGGACGTGGTTCGGGGCATCCAGGTGGCGGTCGAGGCGACGAATACGCCGTCTGGTCAGGTGGGATCCTTG CGGAATGTTGCTATCCGACGGTTCGAGCTGCGGACCATCTTGGGAGAGGGGCCGTTGGTAGCGGATGACGCGCAA GATGAGAGCAGACCAGGCGGGATCTGGATCGAAATCAGCCACGAAAGGGCAGCATACGCCGCTGTCCTTTTACCC GGACTGGCTTCATCGTCTAGCCGACCGTCGACGACGGTGCAATTTGGAAGAAAGGAGGCGGACGTGGACGCCAGT CAATTCCTGCATCTGCCTCTGCTGCTGCTACGGATGCCGCAGTCGTTACGAGCCGTCGTGTGCGAATGGCTATCG ACAACGTTTGACTGCCGCGTCAGAAAGCTTTCGCTGGGGACACGAACGCTGGTCAGCGTCATGGAGGACTGGCTA GACGTGGTCGGTCTACCAGCAAAAGGGCCCGATCTAATTCTCAGCCTCGGCTTCAACGTGCCGCTCGTGGAACCA GCAACGACGGAAGACGGCGAAGGCGATACGACCATGATGGACGACGACGGCGACGCAGCGGGACTACGCGTGTTG GAGGTGACGATGACCTCTTCCGACGTCAGCCGATTCCGACGCTACGGACTGGCGCACGGCGCGTTCAAGAGTCGA TGGGAGACGAGCGGCGATGAGCGGCAACGGCGCAGACTGGCGGGCGGCAACGTCGACGACGGATGGGCGTGGAGG GGAGCTTCGACGAGGCAGCCGTTGATGGAGGGTCTGGCGCGGTATCTCGACGGGCATCTGGCGCTGGACGTGTTC CATCCCGGGGTGCGGGTGGTGCAGGTTTCTTGCGGGTCGTTTGTGCTGGCGCCTTCGCGGTTGAAGCTGGTCAAG GGGAGGGAGGAAGCGGATGAAGCGAGCGATGTCGGCGCGAGGCTTAAGAGAAGGACCTGCAACGTCGAAGGCCTT GGCTTGTATCTCAGGCAGGTAGGCAGGAGACGGGTTCTGAGACTTGTGCTGGGCATCATTGCATCCGGCTTCCTC GACGACTACAGCGAAGGCGCCCACCCCCAAGTCCTCTCCGCCCTCGGCGCCACAAACACCAGCCAAGAAGCCGGC TACGGAGCCGACCGCTACAGCGCCGAAGCCCGCCTGCACCTCCGCCGCCACCTCGGCCACGACGACGCCCACATC TTCTTCGTCCCCAGCGGAACAGCCGCCAACGCAATCTCCATCGCCGCCTGTCTGCGTCCGCACGAGGCCGTCATC GCCGCCACCTCGGGCCACATCGTGACGCGCGAGACGGGCGCCGTGGAAGCCAGCGGCCACAAGATCATCACGGTG CCGCCCTGTAACGGCAAGTTGACGGTCGACGGCATTGACAAGGCCCTGGCGGAGAATTGGCATTTCCCGCACATG GCTAGGCCGAGGCTCGTCTATGTTTCGAACGCTACAGAGGCGGGACCAAGAACGGCGCCCTCCTCGGCGAAGCCA TCGTCGTCAAAGACGCAAGCCTAG |
| Gene | >Ophun1|3793 ATGGCAACAAACGGCGTCGACGCCGAGCCGGCTCCTCCCTTCTTCAACACGACCTTTTCTACTCACAGCGTGTCG CCGCTATACATCGGTCCCGAAGGCCTGCCGCCCGTGCGACTCGATCTTCTGGCGAGGCGGCTACGCGATACGCTG GTCGGGGACGTGGTTCGGGGCATCCAGGTGGCGGTCGAGGCGACGAATACGCCGTCTGGTCAGGTGGGATCCTTG CGGAATGTTGCTATCCGACGGTTCGAGCTGCGGACCATCTTGGGAGAGGGGCCGTTGGTAGCGGATGACGCGCAA GATGAGAGCAGACCAGGCGGGATCTGGATCGAAATCAGCCACGAAAGGGCAGCATACGCCGCTGTCCTTTTACCC GGACTGGCTTCATCGTCTAGCCGACCGTCGACGACGGTGCAATTTGGAAGAAAGGAGGCGGACGTGGACGCCAGT CAATTCCTGCATCTGCCTCTGCTGCTGCTACGGATGCCGCAGTCGTTACGAGCCGTCGTGTGCGAATGGCTATCG ACAACGTTTGACTGCCGCGTCAGAAAGCTTTCGCTGGGGACACGAACGCTGGTCAGCGTCATGGAGGACTGGCTA GACGTGGTCGGTCTACCAGCAAAAGGGCCCGATCTAATTCTCAGCCTCGGCTTCAACGTGCCGCTCGTGGAACCA GCAACGACGGAAGACGGCGAAGGCGATACGACCATGATGGACGACGACGGCGACGCAGCGGGACTACGCGTGTTG GAGGTGACGATGACCTCTTCCGACGTCAGCCGATTCCGACGCTACGGACTGGCGCACGGCGCGTTCAAGAGTCGA TGGGAGACGAGCGGCGATGAGCGGCAACGGCGCAGACTGGCGGGCGGCAACGTCGACGACGGATGGGCGTGGAGG GGAGCTTCGACGAGGCAGCCGTTGATGGAGGGTCTGGCGCGGTATCTCGACGGGCATCTGGCGCTGGACGTGTTC CATCCCGGGGTGCGGGTGGTGCAGGTTTCTTGCGGGTCGTTTGTGCTGGCGCCTTCGCGGTTGAAGCTGGTCAAG GGGAGGGAGGAAGCGGATGAAGGTGTGGCGCGAGCGGCGTGGGCTTTTGTGACGCGGTTGGGAGAGAGGGTGGGA GAAGAGGCTGTATGAGGATACGAAGGAGTTGACGATGGCATCTCTTGGTTGCAGCGAGGCTGATCAGGGGGTTGA GAGGGGTTGATGGTGGGCTTGATTGGTGGTTTGCGCCGGCCTTGACCGCCCGGAGCTAGCGAGCGATGTCGGCGC GAGGCTTAAGAGAAGGACCTGCAACGTCGAAGGCCTTGGCTTGTATCTCAGGCAGGTAGGCAGGAGACGGGTTCT GAGACTTGTGCTGGGCATCATTGCATCCGGGTGAGTCTCATGGTTTCGAGGCTTCAGTCCCAATGGATCACCGAG AGCCAGCTGACGGTTCAGGGACCTCGTTCCACCTACATACCAGGTTACTGACTCCCCAACTCCCTCGAGATGCCC GACATCAGCTCCCCCCCTCGCTACAGCTTCCTCGACGACTACAGCGAAGGCGCCCACCCCCAAGTCCTCTCCGCC CTCGGCGCCACAAACACCAGCCAAGAAGCCGGCTACGGAGCCGACCGCTACAGCGCCGAAGCCCGCCTGCACCTC CGCCGCCACCTCGGCCACGACGACGCCCACATCTTCTTCGTCCCCAGCGGAACAGCCGCCAACGCAATCTCCATC GCCGCCTGTCTGCGTCCGCACGAGGCCGTCATCGCCGCCACCTCGGGCCACATCGTGACGCGCGAGACGGGCGCC GTGGAAGCCAGCGGCCACAAGATCATCACGGTGCCGCCCTGTAACGGCAAGTTGACGGTCGACGGCATTGACAAG GCCCTGGCGGAGAATTGGCATTTCCCGCACATGGCTAGGCCGAGGCTCGTCTATGTTTCGAACGCTACAGAGGTT GGCACTGTTTATTCCAAGGCTGAGCTTGAGGCTATCAGGGATTTGTGTCGGGAGAGGGGACTGCTGCTGTTTATG GATGGGGCGCGTTTGGGGGCGGCCCTTACGTCGTCCACCGCCCATCTCATGACTCTCCCCGACATCCTCGACCTA ACCGACATCTTCTGGATAGGCGGGACCAAGAACGGCGCCCTCCTCGGCGAAGCCATCGTCGTCAAAGACGCAAGC CTAG |