© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|3770 |
| Gene name | |
| Location | Contig_34:1733..2856 |
| Strand | - |
| Gene length (bp) | 1123 |
| Transcript length (bp) | 1071 |
| Coding sequence length (bp) | 1071 |
| Protein length (aa) | 357 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04921 | XAP5 | XAP5, circadian clock regulator | 7.0E-93 | 87 | 343 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7LKZ5|FAM50_SCHPO | FAM50 family protein C1020.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xap5 PE=3 SV=2 | 17 | 342 | 1.0E-25 |
| sp|Q299F9|FAM50_DROPS | Protein FAM50 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA11514 PE=3 SV=1 | 7 | 346 | 8.0E-23 |
| sp|Q7PYQ5|FAM50_ANOGA | Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP002062 PE=3 SV=2 | 5 | 346 | 1.0E-22 |
| sp|Q9VAY7|FAM50_DROME | Protein FAM50 homolog OS=Drosophila melanogaster GN=CG12259 PE=2 SV=1 | 3 | 339 | 1.0E-21 |
| sp|Q16U25|FAM50_AEDAE | Protein FAM50 homolog OS=Aedes aegypti GN=AAEL010045 PE=3 SV=1 | 5 | 346 | 5.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7LKZ5|FAM50_SCHPO | FAM50 family protein C1020.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xap5 PE=3 SV=2 | 17 | 342 | 1.0E-25 |
| sp|Q299F9|FAM50_DROPS | Protein FAM50 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA11514 PE=3 SV=1 | 7 | 346 | 8.0E-23 |
| sp|Q7PYQ5|FAM50_ANOGA | Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP002062 PE=3 SV=2 | 5 | 346 | 1.0E-22 |
| sp|Q9VAY7|FAM50_DROME | Protein FAM50 homolog OS=Drosophila melanogaster GN=CG12259 PE=2 SV=1 | 3 | 339 | 1.0E-21 |
| sp|Q16U25|FAM50_AEDAE | Protein FAM50 homolog OS=Aedes aegypti GN=AAEL010045 PE=3 SV=1 | 5 | 346 | 5.0E-20 |
| sp|Q9WV03|FA50A_MOUSE | Protein FAM50A OS=Mus musculus GN=Fam50a PE=1 SV=1 | 159 | 339 | 5.0E-20 |
| sp|Q568K9|FA50A_DANRE | Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1 | 159 | 339 | 6.0E-20 |
| sp|Q28BK4|FA50A_XENTR | Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=2 SV=2 | 165 | 339 | 1.0E-19 |
| sp|Q14320|FA50A_HUMAN | Protein FAM50A OS=Homo sapiens GN=FAM50A PE=1 SV=2 | 159 | 339 | 1.0E-19 |
| sp|Q4KLV7|F50AB_XENLA | Protein FAM50A-B OS=Xenopus laevis GN=fam50a-b PE=2 SV=1 | 165 | 339 | 2.0E-19 |
| sp|Q2VPH1|F50AA_XENLA | Protein FAM50A-A OS=Xenopus laevis GN=fam50a-a PE=2 SV=1 | 165 | 339 | 3.0E-19 |
| sp|Q9WTJ8|FA50B_MOUSE | Protein FAM50B OS=Mus musculus GN=Fam50b PE=2 SV=1 | 159 | 339 | 6.0E-18 |
| sp|Q4R846|FA50B_MACFA | Protein FAM50B OS=Macaca fascicularis GN=FAM50B PE=2 SV=1 | 159 | 339 | 8.0E-17 |
| sp|Q9Y247|FA50B_HUMAN | Protein FAM50B OS=Homo sapiens GN=FAM50B PE=1 SV=1 | 159 | 339 | 4.0E-16 |
| sp|Q69JZ7|XCT_ORYSJ | Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1 | 81 | 339 | 5.0E-16 |
| sp|B8BDW1|XCT_ORYSI | Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. indica GN=XCT PE=3 SV=1 | 81 | 339 | 5.0E-16 |
| sp|Q8H110|XCT_ARATH | Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1 | 157 | 339 | 1.0E-15 |
| sp|Q18691|FAM50_CAEEL | Protein FAM50 homolog OS=Caenorhabditis elegans GN=C47E8.4 PE=3 SV=3 | 5 | 339 | 2.0E-15 |
| sp|A8WXX7|FAM50_CAEBR | Protein FAM50 homolog OS=Caenorhabditis briggsae GN=CBG04561 PE=3 SV=1 | 5 | 339 | 3.0E-15 |
| sp|Q54S94|FAM50_DICDI | Protein FAM50 homolog OS=Dictyostelium discoideum GN=fam50 PE=3 SV=1 | 159 | 336 | 3.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3770 MADQVSSRFAPQKQTTHERLSNHTVGLVALSDFRKRRAEVLEQQEREAREAAQAGGSSAADSAAEKASGSDGGST PKRKKKKKDPKRDRGKKLLSFGDDDDDEEKQNTDRIDESAPVTATADAASPASVKANAAVGVVPRAVTKAALLKE ATERETLRREFMALQEAVKATEIAIPFVFYDGAHIPGGTVRLKKGDFVWVFLDRCRKVGAGRKVGENGHHHRRGW ARAGVDDLMLVRDTIIIPHHYDFYYFVMNKIVGPGGRPLFDYSAEAPESVPDAVSEGLAPAPSKTAAALPDISTL EGAGDDARMTKVVDRRWYARNKHIYPASTWQEFEADKDYANEIRKDTGGNTFFFSS* |
| Coding | >Ophun1|3770 ATGGCCGACCAAGTCTCTTCCCGCTTCGCGCCGCAGAAACAGACGACCCACGAGCGCCTCTCCAATCACACCGTC GGCCTCGTCGCCCTCTCCGACTTCCGCAAGCGCCGCGCCGAGGTGCTCGAGCAGCAGGAACGGGAAGCCCGCGAG GCCGCTCAAGCTGGCGGCTCGTCCGCTGCAGACTCTGCGGCGGAAAAGGCTTCGGGGAGTGATGGAGGGTCGACG CCTAAGCGGAAGAAGAAGAAGAAAGATCCGAAGCGGGATCGGGGAAAGAAGCTGCTGTCTTTTGGCGACGACGAT GATGACGAAGAGAAACAAAACACGGATCGCATCGATGAAAGCGCTCCGGTGACGGCGACGGCTGATGCTGCCTCT CCCGCGTCTGTCAAGGCCAACGCTGCTGTCGGCGTCGTCCCTCGTGCCGTCACCAAGGCGGCCCTGCTCAAGGAG GCGACGGAGCGCGAGACCCTTCGGCGCGAGTTCATGGCTCTGCAAGAGGCGGTCAAGGCGACCGAGATAGCGATC CCCTTCGTCTTCTACGACGGCGCTCACATCCCCGGCGGCACGGTTCGATTGAAAAAGGGCGACTTTGTCTGGGTC TTTCTCGATCGCTGTCGTAAGGTGGGCGCTGGACGAAAGGTTGGCGAGAACGGCCATCACCACAGGCGAGGTTGG GCCAGAGCAGGCGTCGATGATCTAATGCTCGTGCGGGACACCATCATCATACCTCATCATTACGACTTTTATTAC TTTGTCATGAACAAAATCGTCGGCCCCGGTGGCCGTCCCCTCTTCGATTACAGCGCCGAAGCCCCGGAATCGGTC CCCGACGCTGTTTCCGAGGGTCTTGCGCCGGCCCCGTCCAAGACAGCGGCTGCGCTGCCCGATATAAGCACGCTC GAGGGTGCAGGCGACGATGCTCGTATGACAAAGGTGGTGGATCGGAGGTGGTATGCGCGCAACAAGCACATCTAT CCGGCCAGCACGTGGCAGGAGTTTGAAGCCGACAAGGACTATGCCAACGAGATTCGCAAGGACACGGGCGGCAAC ACGTTTTTCTTTTCGAGTTGA |
| Transcript | >Ophun1|3770 ATGGCCGACCAAGTCTCTTCCCGCTTCGCGCCGCAGAAACAGACGACCCACGAGCGCCTCTCCAATCACACCGTC GGCCTCGTCGCCCTCTCCGACTTCCGCAAGCGCCGCGCCGAGGTGCTCGAGCAGCAGGAACGGGAAGCCCGCGAG GCCGCTCAAGCTGGCGGCTCGTCCGCTGCAGACTCTGCGGCGGAAAAGGCTTCGGGGAGTGATGGAGGGTCGACG CCTAAGCGGAAGAAGAAGAAGAAAGATCCGAAGCGGGATCGGGGAAAGAAGCTGCTGTCTTTTGGCGACGACGAT GATGACGAAGAGAAACAAAACACGGATCGCATCGATGAAAGCGCTCCGGTGACGGCGACGGCTGATGCTGCCTCT CCCGCGTCTGTCAAGGCCAACGCTGCTGTCGGCGTCGTCCCTCGTGCCGTCACCAAGGCGGCCCTGCTCAAGGAG GCGACGGAGCGCGAGACCCTTCGGCGCGAGTTCATGGCTCTGCAAGAGGCGGTCAAGGCGACCGAGATAGCGATC CCCTTCGTCTTCTACGACGGCGCTCACATCCCCGGCGGCACGGTTCGATTGAAAAAGGGCGACTTTGTCTGGGTC TTTCTCGATCGCTGTCGTAAGGTGGGCGCTGGACGAAAGGTTGGCGAGAACGGCCATCACCACAGGCGAGGTTGG GCCAGAGCAGGCGTCGATGATCTAATGCTCGTGCGGGACACCATCATCATACCTCATCATTACGACTTTTATTAC TTTGTCATGAACAAAATCGTCGGCCCCGGTGGCCGTCCCCTCTTCGATTACAGCGCCGAAGCCCCGGAATCGGTC CCCGACGCTGTTTCCGAGGGTCTTGCGCCGGCCCCGTCCAAGACAGCGGCTGCGCTGCCCGATATAAGCACGCTC GAGGGTGCAGGCGACGATGCTCGTATGACAAAGGTGGTGGATCGGAGGTGGTATGCGCGCAACAAGCACATCTAT CCGGCCAGCACGTGGCAGGAGTTTGAAGCCGACAAGGACTATGCCAACGAGATTCGCAAGGACACGGGCGGCAAC ACGTTTTTCTTTTCGAGTTGA |
| Gene | >Ophun1|3770 ATGGCCGACCAAGTCTCTTCCCGCTTCGCGCCGCAGAAACAGACGACCCACGAGCGCCTCTCCAATCACACCGTC GGCCTCGTCGCCCTCTCCGACTTCCGCAAGCGCCGCGCCGAGGTGCTCGAGCAGCAGGAACGGGAAGCCCGCGAG GCCGCTCAAGCTGGCGGCTCGTCCGCTGCAGACTCTGCGGCGGAAAAGGCTTCGGGGAGTGATGGAGGGTCGACG CCTAAGCGGAAGAAGAAGAAGAAAGATCCGAAGCGGGATCGGGGAAAGAAGCTGCTGTCTTTTGGCGACGACGAT GATGACGAAGAGAAACAAAACACGGATCGCATCGATGAAAGCGCTCCGGTGACGGCGACGGCTGATGCTGCCTCT CCCGCGTCTGTCAAGGCCAACGCTGCTGTCGGCGTCGTCCCTCGTGCCGTCACCAAGGCGGCCCTGCTCAAGGAG GCGACGGAGCGCGAGACCCTTCGGCGCGAGTTCATGGCTCTGCAAGAGGCGGTCAAGGCGACCGAGATAGCGATC CCCTTCGTCTTCTACGACGGCGCTCACATCCCCGGCGGCACGGTTCGATTGAAAAAGGGCGACTTTGTCTGGGTC TTTCTCGATCGCTGTCGTAAGGTGGGCGCTGGACGAAAGGTTGGCGAGAACGGCCATCACCACAGGCGAGGTTGG GCCAGAGCAGGCGTCGATGATCTAATGCTCGTGCGGGACACCATCATCATACCTCATGTGAGGCTCGACACCGAT TCACTTTGTCGGTACGCAGGCTGACTTGTCACAGCATTACGACTTTTATTACTTTGTCATGAACAAAATCGTCGG CCCCGGTGGCCGTCCCCTCTTCGATTACAGCGCCGAAGCCCCGGAATCGGTCCCCGACGCTGTTTCCGAGGGTCT TGCGCCGGCCCCGTCCAAGACAGCGGCTGCGCTGCCCGATATAAGCACGCTCGAGGGTGCAGGCGACGATGCTCG TATGACAAAGGTGGTGGATCGGAGGTGGTATGCGCGCAACAAGCACATCTATCCGGCCAGCACGTGGCAGGAGTT TGAAGCCGACAAGGACTATGCCAACGAGATTCGCAAGGACACGGGCGGCAACACGTTTTTCTTTTCGAGTTGA |