© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|3752 |
| Gene name | |
| Location | Contig_337:17821..18499 |
| Strand | - |
| Gene length (bp) | 678 |
| Transcript length (bp) | 678 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05175 | MTS | Methyltransferase small domain | 2.3E-13 | 34 | 177 |
| PF13847 | Methyltransf_31 | Methyltransferase domain | 2.8E-09 | 65 | 184 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 1.6E-08 | 67 | 159 |
| PF06325 | PrmA | Ribosomal protein L11 methyltransferase (PrmA) | 9.5E-09 | 62 | 132 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 2.2E-06 | 67 | 173 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q58338|Y928_METJA | Putative protein methyltransferase MJ0928 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0928 PE=3 SV=1 | 30 | 181 | 5.0E-24 |
| sp|Q0VP64|RSMC_ALCBS | Ribosomal RNA small subunit methyltransferase C OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) GN=rsmC PE=3 SV=1 | 67 | 177 | 4.0E-11 |
| sp|Q1QUF2|RSMC_CHRSD | Ribosomal RNA small subunit methyltransferase C OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rsmC PE=3 SV=1 | 32 | 182 | 2.0E-10 |
| sp|A0KPP9|RSMC_AERHH | Ribosomal RNA small subunit methyltransferase C OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=rsmC PE=3 SV=1 | 61 | 182 | 1.0E-09 |
| sp|A4SIE3|RSMC_AERS4 | Ribosomal RNA small subunit methyltransferase C OS=Aeromonas salmonicida (strain A449) GN=rsmC PE=3 SV=1 | 66 | 182 | 4.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q58338|Y928_METJA | Putative protein methyltransferase MJ0928 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0928 PE=3 SV=1 | 30 | 181 | 5.0E-24 |
| sp|Q0VP64|RSMC_ALCBS | Ribosomal RNA small subunit methyltransferase C OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) GN=rsmC PE=3 SV=1 | 67 | 177 | 4.0E-11 |
| sp|Q1QUF2|RSMC_CHRSD | Ribosomal RNA small subunit methyltransferase C OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rsmC PE=3 SV=1 | 32 | 182 | 2.0E-10 |
| sp|A0KPP9|RSMC_AERHH | Ribosomal RNA small subunit methyltransferase C OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=rsmC PE=3 SV=1 | 61 | 182 | 1.0E-09 |
| sp|A4SIE3|RSMC_AERS4 | Ribosomal RNA small subunit methyltransferase C OS=Aeromonas salmonicida (strain A449) GN=rsmC PE=3 SV=1 | 66 | 182 | 4.0E-09 |
| sp|A3N3U3|RSMC_ACTP2 | Ribosomal RNA small subunit methyltransferase C OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rsmC PE=3 SV=1 | 34 | 182 | 9.0E-08 |
| sp|A5UFI6|RSMC_HAEIG | Ribosomal RNA small subunit methyltransferase C OS=Haemophilus influenzae (strain PittGG) GN=rsmC PE=3 SV=1 | 67 | 182 | 1.0E-07 |
| sp|Q39Q76|PRMA_GEOMG | Ribosomal protein L11 methyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=prmA PE=3 SV=1 | 26 | 180 | 1.0E-07 |
| sp|A4W687|RSMC_ENT38 | Ribosomal RNA small subunit methyltransferase C OS=Enterobacter sp. (strain 638) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-07 |
| sp|A8ALZ1|RSMC_CITK8 | Ribosomal RNA small subunit methyltransferase C OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-07 |
| sp|A9CG70|PRMC_AGRFC | Release factor glutamine methyltransferase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=prmC PE=3 SV=1 | 66 | 198 | 2.0E-07 |
| sp|A9MRB9|RSMC_SALAR | Ribosomal RNA small subunit methyltransferase C OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rsmC PE=3 SV=1 | 67 | 136 | 2.0E-07 |
| sp|A5G9G5|PRMA_GEOUR | Ribosomal protein L11 methyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=prmA PE=3 SV=1 | 29 | 169 | 2.0E-07 |
| sp|B4T4F9|RSMC_SALNS | Ribosomal RNA small subunit methyltransferase C OS=Salmonella newport (strain SL254) GN=rsmC PE=3 SV=1 | 67 | 154 | 3.0E-07 |
| sp|P39199|PRMB_ECOLI | 50S ribosomal protein L3 glutamine methyltransferase OS=Escherichia coli (strain K12) GN=prmB PE=1 SV=3 | 62 | 176 | 3.0E-07 |
| sp|Q32DK7|PRMB_SHIDS | 50S ribosomal protein L3 glutamine methyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=prmB PE=3 SV=2 | 62 | 176 | 4.0E-07 |
| sp|B3GZF1|RSMC_ACTP7 | Ribosomal RNA small subunit methyltransferase C OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rsmC PE=3 SV=1 | 34 | 182 | 4.0E-07 |
| sp|B5R9T9|RSMC_SALG2 | Ribosomal RNA small subunit methyltransferase C OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rsmC PE=3 SV=1 | 67 | 154 | 4.0E-07 |
| sp|Q65S65|RSMC_MANSM | Ribosomal RNA small subunit methyltransferase C OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rsmC PE=3 SV=1 | 24 | 182 | 4.0E-07 |
| sp|B4TU29|RSMC_SALSV | Ribosomal RNA small subunit methyltransferase C OS=Salmonella schwarzengrund (strain CVM19633) GN=rsmC PE=3 SV=1 | 67 | 154 | 4.0E-07 |
| sp|B5F512|RSMC_SALA4 | Ribosomal RNA small subunit methyltransferase C OS=Salmonella agona (strain SL483) GN=rsmC PE=3 SV=1 | 67 | 154 | 4.0E-07 |
| sp|B4TGY8|RSMC_SALHS | Ribosomal RNA small subunit methyltransferase C OS=Salmonella heidelberg (strain SL476) GN=rsmC PE=3 SV=1 | 67 | 154 | 4.0E-07 |
| sp|Q5NEL0|PRMB_FRATT | 50S ribosomal protein L3 glutamine methyltransferase OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) GN=prmB PE=3 SV=1 | 59 | 186 | 5.0E-07 |
| sp|B5FTB3|RSMC_SALDC | Ribosomal RNA small subunit methyltransferase C OS=Salmonella dublin (strain CT_02021853) GN=rsmC PE=3 SV=1 | 67 | 154 | 5.0E-07 |
| sp|B5R2I6|RSMC_SALEP | Ribosomal RNA small subunit methyltransferase C OS=Salmonella enteritidis PT4 (strain P125109) GN=rsmC PE=3 SV=1 | 67 | 154 | 5.0E-07 |
| sp|Q8ZJW6|RSMC_SALTY | Ribosomal RNA small subunit methyltransferase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rsmC PE=3 SV=1 | 67 | 154 | 5.0E-07 |
| sp|Q5PK16|RSMC_SALPA | Ribosomal RNA small subunit methyltransferase C OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rsmC PE=3 SV=1 | 67 | 154 | 5.0E-07 |
| sp|B5BL07|RSMC_SALPK | Ribosomal RNA small subunit methyltransferase C OS=Salmonella paratyphi A (strain AKU_12601) GN=rsmC PE=3 SV=1 | 67 | 154 | 5.0E-07 |
| sp|A9N7C4|RSMC_SALPB | Ribosomal RNA small subunit methyltransferase C OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmC PE=3 SV=1 | 67 | 154 | 5.0E-07 |
| sp|Q8Z0V2|RSMC_SALTI | Ribosomal RNA small subunit methyltransferase C OS=Salmonella typhi GN=rsmC PE=3 SV=1 | 67 | 154 | 5.0E-07 |
| sp|P45253|PRMC_HAEIN | Release factor glutamine methyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=prmC PE=3 SV=1 | 66 | 197 | 9.0E-07 |
| sp|Q748B2|PRMC_GEOSL | Release factor glutamine methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=prmC PE=3 SV=1 | 32 | 177 | 9.0E-07 |
| sp|B1XFI0|RSMC_ECODH | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli (strain K12 / DH10B) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|B7NH38|RSMC_ECOLU | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|B8E1A7|PRMA_DICTD | Ribosomal protein L11 methyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=prmA PE=3 SV=1 | 62 | 148 | 1.0E-06 |
| sp|B1IS49|RSMC_ECOLC | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|A7MGA7|RSMC_CROS8 | Ribosomal RNA small subunit methyltransferase C OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rsmC PE=3 SV=1 | 67 | 136 | 1.0E-06 |
| sp|Q8X510|RSMC_ECO57 | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli O157:H7 GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|B5Z4Q2|RSMC_ECO5E | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|B7MNC1|RSMC_ECO45 | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|A1AJP2|RSMC_ECOK1 | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli O1:K1 / APEC GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|P39406|RSMC_ECOLI | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli (strain K12) GN=rsmC PE=1 SV=3 | 67 | 154 | 1.0E-06 |
| sp|Q1R2D5|RSMC_ECOUT | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli (strain UTI89 / UPEC) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|Q327M6|RSMC_SHIDS | Ribosomal RNA small subunit methyltransferase C OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|B7MTB6|RSMC_ECO81 | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli O81 (strain ED1a) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|Q0T8U3|RSMC_ECOL5 | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|Q9RXR2|PRMC_DEIRA | Release factor glutamine methyltransferase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=prmC PE=3 SV=1 | 31 | 135 | 1.0E-06 |
| sp|Q57G51|RSMC_SALCH | Ribosomal RNA small subunit methyltransferase C OS=Salmonella choleraesuis (strain SC-B67) GN=rsmC PE=3 SV=1 | 67 | 154 | 1.0E-06 |
| sp|Q4QPN2|RSMC_HAEI8 | Ribosomal RNA small subunit methyltransferase C OS=Haemophilus influenzae (strain 86-028NP) GN=rsmC PE=3 SV=1 | 18 | 182 | 1.0E-06 |
| sp|B7LEL6|RSMC_ECO55 | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli (strain 55989 / EAEC) GN=rsmC PE=3 SV=1 | 67 | 154 | 2.0E-06 |
| sp|B7LNK6|RSMC_ESCF3 | Ribosomal RNA small subunit methyltransferase C OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rsmC PE=3 SV=1 | 67 | 154 | 2.0E-06 |
| sp|B1LEH4|RSMC_ECOSM | Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rsmC PE=3 SV=1 | 67 | 154 | 2.0E-06 |
| sp|A5UBC5|RSMC_HAEIE | Ribosomal RNA small subunit methyltransferase C OS=Haemophilus influenzae (strain PittEE) GN=rsmC PE=3 SV=1 | 67 | 182 | 3.0E-06 |
| sp|Q9CM79|RSMC_PASMU | Ribosomal RNA small subunit methyltransferase C OS=Pasteurella multocida (strain Pm70) GN=rsmC PE=3 SV=1 | 61 | 182 | 4.0E-06 |
| sp|Q9CHX0|PRMC_LACLA | Release factor glutamine methyltransferase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=prmC PE=3 SV=1 | 28 | 202 | 6.0E-06 |
| sp|B7IFP7|PRMA_THEAB | Ribosomal protein L11 methyltransferase OS=Thermosipho africanus (strain TCF52B) GN=prmA PE=3 SV=1 | 63 | 148 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008168 | methyltransferase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3752 MASPRTDWEQRISDLITESKKHDQIYSAPIGGYTVHVHPTVYSPKYFPETLWYGENLPDIVQGRSFLEVGIGSGL ISLCVAASGSKVSGVDINPHAVDVARKNFAVNGQKGNFVVSDIFENVCGKFDFIFWNHPWQIDASIPKELKSEKT LDQGYRLLKRFIAEAEDYLEPDGCVMLGTSAYADLEAMEAIYAANGYTHRVIEQGTRSIGEGITEEYYIVELRRN * |
| Coding | >Ophun1|3752 ATGGCTTCTCCGCGTACCGACTGGGAACAGCGCATCTCGGATCTCATCACCGAGTCCAAGAAGCATGACCAGATC TACTCGGCACCCATCGGCGGCTACACCGTCCACGTCCACCCAACCGTCTACTCGCCCAAATACTTCCCCGAGACG CTTTGGTACGGCGAGAACCTGCCGGACATTGTACAAGGACGGTCCTTTCTCGAGGTCGGCATCGGCTCTGGCCTC ATCTCTCTATGTGTCGCGGCCTCGGGCTCCAAGGTATCGGGCGTCGACATCAACCCACACGCCGTCGACGTGGCA CGCAAGAACTTTGCCGTCAACGGGCAAAAGGGCAACTTCGTCGTCAGCGACATCTTTGAAAACGTCTGCGGGAAA TTCGACTTTATCTTCTGGAATCACCCGTGGCAGATTGATGCTTCTATCCCCAAGGAGCTCAAGTCGGAGAAGACG TTAGATCAGGGCTATCGGTTGCTGAAGCGCTTCATCGCAGAGGCAGAGGATTACCTTGAGCCTGATGGGTGTGTG ATGTTGGGGACGAGTGCGTATGCCGACTTGGAGGCCATGGAGGCCATTTACGCCGCCAATGGATATACACACCGC GTCATTGAGCAGGGGACGCGGTCCATTGGAGAGGGAATTACGGAGGAGTATTACATTGTCGAGTTGCGGCGCAAT TAG |
| Transcript | >Ophun1|3752 ATGGCTTCTCCGCGTACCGACTGGGAACAGCGCATCTCGGATCTCATCACCGAGTCCAAGAAGCATGACCAGATC TACTCGGCACCCATCGGCGGCTACACCGTCCACGTCCACCCAACCGTCTACTCGCCCAAATACTTCCCCGAGACG CTTTGGTACGGCGAGAACCTGCCGGACATTGTACAAGGACGGTCCTTTCTCGAGGTCGGCATCGGCTCTGGCCTC ATCTCTCTATGTGTCGCGGCCTCGGGCTCCAAGGTATCGGGCGTCGACATCAACCCACACGCCGTCGACGTGGCA CGCAAGAACTTTGCCGTCAACGGGCAAAAGGGCAACTTCGTCGTCAGCGACATCTTTGAAAACGTCTGCGGGAAA TTCGACTTTATCTTCTGGAATCACCCGTGGCAGATTGATGCTTCTATCCCCAAGGAGCTCAAGTCGGAGAAGACG TTAGATCAGGGCTATCGGTTGCTGAAGCGCTTCATCGCAGAGGCAGAGGATTACCTTGAGCCTGATGGGTGTGTG ATGTTGGGGACGAGTGCGTATGCCGACTTGGAGGCCATGGAGGCCATTTACGCCGCCAATGGATATACACACCGC GTCATTGAGCAGGGGACGCGGTCCATTGGAGAGGGAATTACGGAGGAGTATTACATTGTCGAGTTGCGGCGCAAT TAG |
| Gene | >Ophun1|3752 ATGGCTTCTCCGCGTACCGACTGGGAACAGCGCATCTCGGATCTCATCACCGAGTCCAAGAAGCATGACCAGATC TACTCGGCACCCATCGGCGGCTACACCGTCCACGTCCACCCAACCGTCTACTCGCCCAAATACTTCCCCGAGACG CTTTGGTACGGCGAGAACCTGCCGGACATTGTACAAGGACGGTCCTTTCTCGAGGTCGGCATCGGCTCTGGCCTC ATCTCTCTATGTGTCGCGGCCTCGGGCTCCAAGGTATCGGGCGTCGACATCAACCCACACGCCGTCGACGTGGCA CGCAAGAACTTTGCCGTCAACGGGCAAAAGGGCAACTTCGTCGTCAGCGACATCTTTGAAAACGTCTGCGGGAAA TTCGACTTTATCTTCTGGAATCACCCGTGGCAGATTGATGCTTCTATCCCCAAGGAGCTCAAGTCGGAGAAGACG TTAGATCAGGGCTATCGGTTGCTGAAGCGCTTCATCGCAGAGGCAGAGGATTACCTTGAGCCTGATGGGTGTGTG ATGTTGGGGACGAGTGCGTATGCCGACTTGGAGGCCATGGAGGCCATTTACGCCGCCAATGGATATACACACCGC GTCATTGAGCAGGGGACGCGGTCCATTGGAGAGGGAATTACGGAGGAGTATTACATTGTCGAGTTGCGGCGCAAT TAG |