© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3716 |
| Gene name | |
| Location | Contig_332:9053..10303 |
| Strand | - |
| Gene length (bp) | 1250 |
| Transcript length (bp) | 1191 |
| Coding sequence length (bp) | 1191 |
| Protein length (aa) | 397 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 1.4E-10 | 313 | 360 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 4.8E-08 | 314 | 355 |
| PF14447 | Prok-RING_4 | Prokaryotic RING finger family 4 | 5.1E-07 | 315 | 362 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.0E-06 | 315 | 353 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 8.8E-07 | 315 | 355 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.3E-06 | 314 | 356 |
| PF12861 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger | 8.3E-05 | 314 | 362 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87176|SLX8_SCHPO | E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx8 PE=1 SV=1 | 298 | 359 | 2.0E-09 |
| sp|Q6PCN7|HLTF_MOUSE | Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | 314 | 359 | 5.0E-08 |
| sp|Q5M807|RNF5_RAT | E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1 | 294 | 359 | 7.0E-08 |
| sp|O35445|RNF5_MOUSE | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1 | 294 | 359 | 7.0E-08 |
| sp|Q99942|RNF5_HUMAN | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1 | 305 | 359 | 8.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87176|SLX8_SCHPO | E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx8 PE=1 SV=1 | 298 | 359 | 2.0E-09 |
| sp|Q6PCN7|HLTF_MOUSE | Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | 314 | 359 | 5.0E-08 |
| sp|Q5M807|RNF5_RAT | E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1 | 294 | 359 | 7.0E-08 |
| sp|O35445|RNF5_MOUSE | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1 | 294 | 359 | 7.0E-08 |
| sp|Q99942|RNF5_HUMAN | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1 | 305 | 359 | 8.0E-08 |
| sp|Q91YT2|RN185_MOUSE | E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1 | 311 | 359 | 2.0E-07 |
| sp|Q14527|HLTF_HUMAN | Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 | 290 | 359 | 2.0E-07 |
| sp|Q96GF1|RN185_HUMAN | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1 | 311 | 359 | 2.0E-07 |
| sp|Q568Y3|RN185_RAT | E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1 | 311 | 359 | 2.0E-07 |
| sp|Q5RFK9|RN185_PONAB | E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1 | 311 | 359 | 3.0E-07 |
| sp|Q95216|HLTF_RABIT | Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 | 314 | 359 | 3.0E-07 |
| sp|Q5ZIR9|RN185_CHICK | E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1 | 311 | 359 | 6.0E-07 |
| sp|Q6PC78|RN185_DANRE | E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2 SV=1 | 311 | 359 | 7.0E-07 |
| sp|O64425|RMA1_ARATH | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1 | 288 | 373 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0031145 | anaphase-promoting complex-dependent catabolic process | Yes |
| GO:0097602 | cullin family protein binding | Yes |
| GO:0061630 | ubiquitin protein ligase activity | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0016740 | transferase activity | No |
| GO:0004842 | ubiquitin-protein transferase activity | No |
| GO:0009056 | catabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0008152 | metabolic process | No |
| GO:0061659 | ubiquitin-like protein ligase activity | No |
| GO:0009987 | cellular process | No |
| GO:1902494 | catalytic complex | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1990234 | transferase complex | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019787 | ubiquitin-like protein transferase activity | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0005515 | protein binding | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0030163 | protein catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0006511 | ubiquitin-dependent protein catabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0010498 | proteasomal protein catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3716 MATAATLAEQPFDSPAELLLADQLPGSAEWEDVWSAGLPPLPPPSQRFQRVSSPRQTPAADHPSSSSKFSPPARA HDFSSPWRLNPDFDLDNQWNFDSVDGTSLASRSTQSTSFLEDGAYLSFLADNSFSSPSDYPSFLERRPETGISLH DSSTSASAAVPRSPSLTDNHAFYLDDDFFASSSQLANELNSSSTINTLPNYHFGDQTLSRDFASGSLAEMPPTRT RSSVDDDANHASAPSPKRQRTSFTQGCHSSMKPMAMPKPSDDDDDDPFVDKIKKDPNDLPTIDLTGNEAITEEAE KQEPDRRIKISAYQCAICMDNVTTLMVTHCGHLYCQECLHSSLHVDSTKGKCPMCRAKIDMKHRSTYTTKTKGFW PLELKFMTVDKKGKRKANAMS* |
| Coding | >Ophun1|3716 ATGGCAACGGCCGCCACGCTCGCCGAGCAACCCTTCGACTCGCCCGCCGAGCTTCTCCTGGCCGATCAGCTCCCG GGCTCAGCAGAGTGGGAAGACGTCTGGTCCGCCGGTCTGCCTCCGCTGCCGCCACCTTCTCAGCGGTTCCAACGC GTCTCGTCGCCTCGACAGACGCCCGCAGCCGACCATCCGTCTTCCTCGTCCAAGTTTTCCCCGCCCGCCCGAGCC CACGACTTTTCGTCTCCGTGGCGGCTGAATCCCGATTTCGACCTGGATAATCAGTGGAACTTCGATAGCGTCGAC GGCACCTCTCTTGCTTCGCGCTCTACCCAGAGCACATCATTCCTCGAGGACGGGGCCTACCTCAGCTTTCTCGCC GACAACAGCTTTTCCTCTCCCTCGGATTACCCATCCTTTCTCGAAAGAAGACCCGAAACCGGAATTTCGCTGCAC GATTCTTCCACTTCTGCATCCGCCGCCGTGCCACGATCTCCCTCCCTTACCGACAATCACGCCTTCTACCTCGAC GACGACTTCTTTGCATCCTCATCACAGCTCGCCAACGAGCTGAATTCGTCTTCTACAATTAATACACTTCCAAAT TATCACTTTGGCGATCAAACTCTATCACGCGATTTCGCGTCCGGATCTTTAGCCGAAATGCCTCCGACGAGAACG CGAAGTTCCGTAGACGACGATGCGAACCACGCCTCCGCCCCCTCTCCCAAGAGACAACGAACCTCGTTCACGCAA GGCTGTCACTCATCGATGAAGCCCATGGCCATGCCCAAACCATCCGACGACGACGACGACGACCCCTTCGTCGAC AAGATCAAGAAGGATCCCAACGATCTGCCTACCATCGACCTGACGGGGAACGAAGCCATCACCGAAGAGGCTGAG AAGCAGGAGCCCGACCGACGCATCAAGATTTCAGCGTATCAGTGTGCTATCTGCATGGATAACGTGACGACGCTT ATGGTTACACATTGCGGCCACCTGTACTGCCAAGAATGCCTCCACTCATCGCTTCACGTGGACTCGACCAAGGGC AAGTGCCCCATGTGCCGAGCCAAGATCGACATGAAGCATCGCTCGACATACACGACCAAAACAAAGGGTTTCTGG CCACTCGAGCTCAAGTTCATGACGGTCGACAAGAAGGGGAAGCGCAAAGCGAATGCCATGTCATGA |
| Transcript | >Ophun1|3716 ATGGCAACGGCCGCCACGCTCGCCGAGCAACCCTTCGACTCGCCCGCCGAGCTTCTCCTGGCCGATCAGCTCCCG GGCTCAGCAGAGTGGGAAGACGTCTGGTCCGCCGGTCTGCCTCCGCTGCCGCCACCTTCTCAGCGGTTCCAACGC GTCTCGTCGCCTCGACAGACGCCCGCAGCCGACCATCCGTCTTCCTCGTCCAAGTTTTCCCCGCCCGCCCGAGCC CACGACTTTTCGTCTCCGTGGCGGCTGAATCCCGATTTCGACCTGGATAATCAGTGGAACTTCGATAGCGTCGAC GGCACCTCTCTTGCTTCGCGCTCTACCCAGAGCACATCATTCCTCGAGGACGGGGCCTACCTCAGCTTTCTCGCC GACAACAGCTTTTCCTCTCCCTCGGATTACCCATCCTTTCTCGAAAGAAGACCCGAAACCGGAATTTCGCTGCAC GATTCTTCCACTTCTGCATCCGCCGCCGTGCCACGATCTCCCTCCCTTACCGACAATCACGCCTTCTACCTCGAC GACGACTTCTTTGCATCCTCATCACAGCTCGCCAACGAGCTGAATTCGTCTTCTACAATTAATACACTTCCAAAT TATCACTTTGGCGATCAAACTCTATCACGCGATTTCGCGTCCGGATCTTTAGCCGAAATGCCTCCGACGAGAACG CGAAGTTCCGTAGACGACGATGCGAACCACGCCTCCGCCCCCTCTCCCAAGAGACAACGAACCTCGTTCACGCAA GGCTGTCACTCATCGATGAAGCCCATGGCCATGCCCAAACCATCCGACGACGACGACGACGACCCCTTCGTCGAC AAGATCAAGAAGGATCCCAACGATCTGCCTACCATCGACCTGACGGGGAACGAAGCCATCACCGAAGAGGCTGAG AAGCAGGAGCCCGACCGACGCATCAAGATTTCAGCGTATCAGTGTGCTATCTGCATGGATAACGTGACGACGCTT ATGGTTACACATTGCGGCCACCTGTACTGCCAAGAATGCCTCCACTCATCGCTTCACGTGGACTCGACCAAGGGC AAGTGCCCCATGTGCCGAGCCAAGATCGACATGAAGCATCGCTCGACATACACGACCAAAACAAAGGGTTTCTGG CCACTCGAGCTCAAGTTCATGACGGTCGACAAGAAGGGGAAGCGCAAAGCGAATGCCATGTCATGA |
| Gene | >Ophun1|3716 ATGGCAACGGCCGCCACGCTCGCCGAGCAACCCTTCGACTCGCCCGCCGAGCTTCTCCTGGCCGATCAGCTCCCG GGCTCAGCAGAGTGGGAAGACGTCTGGTCCGCCGGTCTGCCTCCGCTGCCGCCACCTTCTCAGCGGTTCCAACGC GTCTCGTCGCCTCGACAGACGCCCGCAGCCGACCATCCGTCTTCCTCGTCCAAGTTTTCCCCGCCCGCCCGAGCC CACGACTTTTCGTCTCCGTGGCGGCTGAATCCCGATTTCGACCTGGATAATCAGTGGAACTTCGATAGCGTCGAC GGCACCTCTCTTGCTTCGCGCTCTACCCAGAGCACATCATTCCTCGAGGACGGGGCCTACCTCAGCTTTCTCGCC GACAACAGCTTTTCCTCTCCCTCGGATTACCCATCCTTTCTCGAAAGAAGACCCGAAACCGGAATTTCGCTGCAC GATTCTTCCACTTCTGCATCCGCCGCCGTGCCACGATCTCCCTCCCTTACCGACAATCACGCCTTCTACCTCGAC GACGACTTCTTTGCATCCTCATCACAGCTCGCCAACGAGCTGAATTCGTCTTCTACAATTAATACACTTCCAAAT TATCACTTTGGCGATCAAACTCTATCACGCGATTTCGCGTCCGGATCTTTAGCCGAAATGCCTCCGACGAGAACG CGAAGTTCCGTAGACGACGATGCGAACCACGCCTCCGCCCCCTCTCCCAAGAGACAACGAACCTCGTTCACGCAA GGCTGTCACTCATCGATGAAGCCCATGGCCATGCCCAAACCATCCGACGACGACGACGACGACCCCTTCGTCGAC AAGATCAAGAAGGATCCCAACGATCTGCCTACCATCGACCTGACGGGGAACGAAGCCATCACCGAAGAGGCTGAG AAGCAGGAGCCCGACCGACGCATCAAGATTTCAGCGTATCAGTGTGCTATCTGCATGGATAACGTGACGACGCTT ATGGTTACACATTGCGGTAGGTGCCCCGGGGAACCTACAGAGGCCTGGGGCACGTCGCTGATGACAGTCCTCCAG GCCACCTGTACTGCCAAGAATGCCTCCACTCATCGCTTCACGTGGACTCGACCAAGGGCAAGTGCCCCATGTGCC GAGCCAAGATCGACATGAAGCATCGCTCGACATACACGACCAAAACAAAGGGTTTCTGGCCACTCGAGCTCAAGT TCATGACGGTCGACAAGAAGGGGAAGCGCAAAGCGAATGCCATGTCATGA |