© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|3614 |
| Gene name | |
| Location | Contig_321:10906..12993 |
| Strand | - |
| Gene length (bp) | 2087 |
| Transcript length (bp) | 2028 |
| Coding sequence length (bp) | 2028 |
| Protein length (aa) | 676 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03851 | UvdE | UV-endonuclease UvdE | 4.9E-109 | 237 | 542 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q01408|UVE1_NEUCR | UV-damage endonuclease OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-18 PE=2 SV=2 | 143 | 649 | 0.0E+00 |
| sp|Q10988|UVE1_SCHPO | UV-damage endonuclease OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uve1 PE=2 SV=1 | 230 | 568 | 2.0E-120 |
| sp|Q5UNU2|UVE1H_MIMIV | Putative UV-damage endonuclease OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L687 PE=1 SV=1 | 236 | 562 | 3.0E-46 |
| sp|A8FIG1|UVSE_BACP2 | UV DNA damage endonuclease OS=Bacillus pumilus (strain SAFR-032) GN=uvsE PE=3 SV=1 | 306 | 563 | 9.0E-37 |
| sp|Q8XIP3|UVSE_CLOPE | UV DNA damage endonuclease OS=Clostridium perfringens (strain 13 / Type A) GN=uvsE PE=3 SV=1 | 302 | 567 | 4.0E-35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q01408|UVE1_NEUCR | UV-damage endonuclease OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-18 PE=2 SV=2 | 143 | 649 | 0.0E+00 |
| sp|Q10988|UVE1_SCHPO | UV-damage endonuclease OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uve1 PE=2 SV=1 | 230 | 568 | 2.0E-120 |
| sp|Q5UNU2|UVE1H_MIMIV | Putative UV-damage endonuclease OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L687 PE=1 SV=1 | 236 | 562 | 3.0E-46 |
| sp|A8FIG1|UVSE_BACP2 | UV DNA damage endonuclease OS=Bacillus pumilus (strain SAFR-032) GN=uvsE PE=3 SV=1 | 306 | 563 | 9.0E-37 |
| sp|Q8XIP3|UVSE_CLOPE | UV DNA damage endonuclease OS=Clostridium perfringens (strain 13 / Type A) GN=uvsE PE=3 SV=1 | 302 | 567 | 4.0E-35 |
| sp|A7Z9T8|UVSE_BACMF | UV DNA damage endonuclease OS=Bacillus methylotrophicus (strain DSM 23117 / BGSC 10A6 / FZB42) GN=uvsE PE=3 SV=1 | 288 | 563 | 3.0E-33 |
| sp|B7IR00|UVSE_BACC2 | UV DNA damage endonuclease OS=Bacillus cereus (strain G9842) GN=uvsE PE=3 SV=1 | 307 | 563 | 4.0E-29 |
| sp|A9VSE5|UVSE_BACWK | UV DNA damage endonuclease OS=Bacillus weihenstephanensis (strain KBAB4) GN=uvsE PE=3 SV=1 | 265 | 563 | 8.0E-29 |
| sp|Q9L4F0|UVSE_BACCR | UV DNA damage endonuclease OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) GN=uvsE PE=3 SV=1 | 307 | 563 | 1.0E-28 |
| sp|B7HFP5|UVSE_BACC4 | UV DNA damage endonuclease OS=Bacillus cereus (strain B4264) GN=uvsE PE=3 SV=1 | 307 | 563 | 1.0E-28 |
| sp|P45864|UVSE_BACSU | UV DNA damage endonuclease OS=Bacillus subtilis (strain 168) GN=uvsE PE=3 SV=1 | 271 | 563 | 2.0E-28 |
| sp|B9IRY0|UVSE_BACCQ | UV DNA damage endonuclease OS=Bacillus cereus (strain Q1) GN=uvsE PE=3 SV=1 | 307 | 563 | 2.0E-26 |
| sp|Q72XA0|UVSE_BACC1 | UV DNA damage endonuclease OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=uvsE PE=3 SV=1 | 307 | 564 | 3.0E-26 |
| sp|C3LFM1|UVSE_BACAC | UV DNA damage endonuclease OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=uvsE PE=3 SV=1 | 307 | 564 | 5.0E-26 |
| sp|Q6HAT6|UVSE_BACHK | UV DNA damage endonuclease OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=uvsE PE=3 SV=1 | 313 | 564 | 5.0E-26 |
| sp|C1F0S5|UVSE_BACC3 | UV DNA damage endonuclease OS=Bacillus cereus (strain 03BB102) GN=uvsE PE=3 SV=1 | 307 | 564 | 6.0E-26 |
| sp|Q81JV2|UVSE_BACAN | UV DNA damage endonuclease OS=Bacillus anthracis GN=uvsE PE=3 SV=2 | 307 | 564 | 2.0E-25 |
| sp|C3P2A9|UVSE_BACAA | UV DNA damage endonuclease OS=Bacillus anthracis (strain A0248) GN=uvsE PE=3 SV=1 | 307 | 564 | 2.0E-25 |
| sp|Q9K9P8|UVSE_BACHD | UV DNA damage endonuclease OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=uvsE PE=3 SV=1 | 272 | 564 | 3.0E-24 |
| sp|Q8YXF0|UVSE_NOSS1 | UV DNA damage endonuclease OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uvsE PE=3 SV=1 | 281 | 570 | 2.0E-18 |
| sp|Q9RTE6|UVSE_DEIRA | UV DNA damage endonuclease OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=uvsE PE=1 SV=2 | 321 | 567 | 2.0E-17 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004519 | endonuclease activity | Yes |
| GO:0006289 | nucleotide-excision repair | Yes |
| GO:0009411 | response to UV | Yes |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0009416 | response to light stimulus | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009628 | response to abiotic stimulus | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006281 | DNA repair | No |
| GO:0033554 | cellular response to stress | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0004518 | nuclease activity | No |
| GO:0009314 | response to radiation | No |
| GO:0006950 | response to stress | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3614 MKLSMKLADEAPDDDATNRWFAVEAGAQIAIRRHGPWTCWSLFLSPSHYRSRARHNRAHHSRAHHSRPSAPDRAA HRRRMPLKSLALPLRRLLSTSSSGTNIAMPPKRKRSAAQPEAPARRSTRTSKVAAALPDPTDDVLSSKEAVAKAV HGLSEMEQRLHREVRKQRLAVQNSDLCRDKPKTTRKPPVEAQTNGGSADTNGADAEAQTEHVAPEKGARRPPAVN SDRLPLPWSGRLGYACLNTYLRAATPPVFCSRTCRLSSIIDHRHPLADPSQPEHATKNRPDKTKPAEVERGLAFV QSLGVANAADIPKMLRWNDRYGIKFMRLSSEMFPFASHKEHGYKLAPFASDVLAEAGRVAAELGHRLTTHPGQYT QIGSPRPEVVTAAVRDLEYHNELLSLLKLPEQQDRDAVMILHMGGMFGDKGATLDRFRQEYARLSDGVKRRLVLE NDDVVWNVHDLLPICEELNIPLVLDFHHHNIVFDPVMREGTQDIIGLFDRIKATWTRKGIRQKMHYSESTAAAVT SRDRRKHSARVKTLPPCASDMDLMIEAKDKEQAVFELMRTFKLPGWDLFNDVVPYERDDEPRKAVVKKIKKGKKA SGEDQVEVIVPEREVGPESVSMGGTEKRVYWPEGMEEWLRPKKRQVNKANGKAGADEGTNGDEEAIKEEEEEREG * |
| Coding | >Ophun1|3614 ATGAAGCTCTCGATGAAGCTGGCCGATGAAGCTCCCGATGATGACGCAACCAACCGATGGTTTGCGGTCGAGGCT GGGGCGCAGATCGCGATACGTCGACATGGCCCTTGGACCTGTTGGTCTCTCTTCCTCTCCCCCTCTCATTACCGC AGCAGGGCACGCCACAACAGGGCACACCACAGCAGGGCACACCACAGCAGGCCATCGGCACCGGACCGCGCCGCC CATCGCCGTCGCATGCCGCTCAAGAGCTTGGCGCTGCCCTTGCGGAGACTCCTGTCGACCTCATCTTCGGGTACG AACATTGCCATGCCACCCAAGCGCAAGCGGTCGGCCGCCCAGCCCGAAGCTCCGGCCAGACGCAGTACCCGGACC TCGAAAGTTGCCGCCGCTCTGCCCGACCCGACCGACGATGTGCTCAGTTCCAAGGAGGCCGTCGCGAAGGCCGTT CATGGACTGAGCGAGATGGAGCAGCGTCTGCACCGCGAGGTCAGAAAGCAGCGTCTTGCCGTTCAAAACTCCGAC TTGTGCCGTGACAAGCCTAAAACGACTCGCAAACCACCTGTTGAGGCTCAGACCAATGGGGGGAGTGCCGATACT AATGGGGCAGATGCCGAGGCTCAGACGGAACATGTCGCTCCGGAAAAGGGAGCCCGGAGACCGCCGGCTGTCAAC AGCGACAGGCTGCCTTTGCCCTGGTCTGGCAGGTTAGGTTATGCTTGTCTCAACACGTATCTTCGAGCAGCAACG CCGCCCGTCTTTTGCTCGCGGACGTGTCGATTGAGCTCCATCATTGACCACCGCCACCCCCTGGCGGACCCTTCA CAGCCGGAGCATGCCACCAAGAATCGACCTGACAAGACGAAGCCGGCCGAAGTTGAGAGAGGGCTCGCTTTCGTC CAGAGCCTGGGTGTCGCCAACGCAGCTGACATTCCCAAGATGCTTCGTTGGAACGATAGGTATGGCATCAAGTTT ATGCGGCTGAGCAGTGAAATGTTCCCCTTTGCGAGCCACAAAGAGCACGGCTACAAGCTGGCGCCCTTTGCGTCC GACGTCTTGGCCGAGGCTGGCAGAGTCGCCGCCGAGCTGGGCCATCGTCTGACGACTCACCCGGGACAGTACACG CAGATCGGCAGTCCGCGGCCGGAGGTGGTTACGGCTGCGGTCCGAGACTTGGAGTATCACAACGAGCTGCTTTCC CTCCTGAAGCTCCCGGAGCAGCAGGACCGCGACGCCGTCATGATTCTGCACATGGGCGGCATGTTTGGCGACAAG GGCGCCACGCTCGATCGATTCCGTCAAGAATACGCCCGGTTATCAGACGGGGTGAAGCGCAGACTGGTACTAGAG AACGACGATGTCGTATGGAACGTTCATGACTTACTCCCTATCTGCGAGGAACTCAACATTCCGCTCGTGCTCGAC TTTCATCACCATAACATCGTCTTCGATCCTGTTATGCGCGAGGGCACGCAGGACATCATAGGCTTGTTCGACCGC ATCAAGGCTACGTGGACGAGAAAAGGCATCAGGCAGAAGATGCACTACAGCGAGTCTACAGCCGCAGCCGTCACG TCGCGCGACCGCAGGAAGCACTCAGCTCGCGTCAAGACGCTACCACCTTGCGCCTCGGACATGGACCTCATGATT GAGGCCAAAGATAAGGAGCAGGCCGTCTTTGAGCTGATGCGGACTTTCAAACTCCCCGGCTGGGACCTCTTCAAC GATGTAGTGCCGTACGAGCGCGATGATGAACCTCGCAAGGCGGTCGTCAAGAAGATCAAGAAGGGAAAAAAGGCC AGTGGCGAGGATCAGGTCGAGGTCATTGTGCCGGAAAGGGAGGTCGGTCCGGAGAGCGTCAGCATGGGCGGCACG GAGAAGCGCGTCTACTGGCCCGAGGGGATGGAGGAGTGGTTAAGGCCGAAGAAGCGGCAGGTGAACAAGGCCAAC GGCAAGGCGGGCGCGGACGAGGGTACGAATGGCGATGAGGAGGCTATCAAGGAGGAAGAGGAGGAACGGGAGGGT TAG |
| Transcript | >Ophun1|3614 ATGAAGCTCTCGATGAAGCTGGCCGATGAAGCTCCCGATGATGACGCAACCAACCGATGGTTTGCGGTCGAGGCT GGGGCGCAGATCGCGATACGTCGACATGGCCCTTGGACCTGTTGGTCTCTCTTCCTCTCCCCCTCTCATTACCGC AGCAGGGCACGCCACAACAGGGCACACCACAGCAGGGCACACCACAGCAGGCCATCGGCACCGGACCGCGCCGCC CATCGCCGTCGCATGCCGCTCAAGAGCTTGGCGCTGCCCTTGCGGAGACTCCTGTCGACCTCATCTTCGGGTACG AACATTGCCATGCCACCCAAGCGCAAGCGGTCGGCCGCCCAGCCCGAAGCTCCGGCCAGACGCAGTACCCGGACC TCGAAAGTTGCCGCCGCTCTGCCCGACCCGACCGACGATGTGCTCAGTTCCAAGGAGGCCGTCGCGAAGGCCGTT CATGGACTGAGCGAGATGGAGCAGCGTCTGCACCGCGAGGTCAGAAAGCAGCGTCTTGCCGTTCAAAACTCCGAC TTGTGCCGTGACAAGCCTAAAACGACTCGCAAACCACCTGTTGAGGCTCAGACCAATGGGGGGAGTGCCGATACT AATGGGGCAGATGCCGAGGCTCAGACGGAACATGTCGCTCCGGAAAAGGGAGCCCGGAGACCGCCGGCTGTCAAC AGCGACAGGCTGCCTTTGCCCTGGTCTGGCAGGTTAGGTTATGCTTGTCTCAACACGTATCTTCGAGCAGCAACG CCGCCCGTCTTTTGCTCGCGGACGTGTCGATTGAGCTCCATCATTGACCACCGCCACCCCCTGGCGGACCCTTCA CAGCCGGAGCATGCCACCAAGAATCGACCTGACAAGACGAAGCCGGCCGAAGTTGAGAGAGGGCTCGCTTTCGTC CAGAGCCTGGGTGTCGCCAACGCAGCTGACATTCCCAAGATGCTTCGTTGGAACGATAGGTATGGCATCAAGTTT ATGCGGCTGAGCAGTGAAATGTTCCCCTTTGCGAGCCACAAAGAGCACGGCTACAAGCTGGCGCCCTTTGCGTCC GACGTCTTGGCCGAGGCTGGCAGAGTCGCCGCCGAGCTGGGCCATCGTCTGACGACTCACCCGGGACAGTACACG CAGATCGGCAGTCCGCGGCCGGAGGTGGTTACGGCTGCGGTCCGAGACTTGGAGTATCACAACGAGCTGCTTTCC CTCCTGAAGCTCCCGGAGCAGCAGGACCGCGACGCCGTCATGATTCTGCACATGGGCGGCATGTTTGGCGACAAG GGCGCCACGCTCGATCGATTCCGTCAAGAATACGCCCGGTTATCAGACGGGGTGAAGCGCAGACTGGTACTAGAG AACGACGATGTCGTATGGAACGTTCATGACTTACTCCCTATCTGCGAGGAACTCAACATTCCGCTCGTGCTCGAC TTTCATCACCATAACATCGTCTTCGATCCTGTTATGCGCGAGGGCACGCAGGACATCATAGGCTTGTTCGACCGC ATCAAGGCTACGTGGACGAGAAAAGGCATCAGGCAGAAGATGCACTACAGCGAGTCTACAGCCGCAGCCGTCACG TCGCGCGACCGCAGGAAGCACTCAGCTCGCGTCAAGACGCTACCACCTTGCGCCTCGGACATGGACCTCATGATT GAGGCCAAAGATAAGGAGCAGGCCGTCTTTGAGCTGATGCGGACTTTCAAACTCCCCGGCTGGGACCTCTTCAAC GATGTAGTGCCGTACGAGCGCGATGATGAACCTCGCAAGGCGGTCGTCAAGAAGATCAAGAAGGGAAAAAAGGCC AGTGGCGAGGATCAGGTCGAGGTCATTGTGCCGGAAAGGGAGGTCGGTCCGGAGAGCGTCAGCATGGGCGGCACG GAGAAGCGCGTCTACTGGCCCGAGGGGATGGAGGAGTGGTTAAGGCCGAAGAAGCGGCAGGTGAACAAGGCCAAC GGCAAGGCGGGCGCGGACGAGGGTACGAATGGCGATGAGGAGGCTATCAAGGAGGAAGAGGAGGAACGGGAGGGT TAG |
| Gene | >Ophun1|3614 ATGAAGCTCTCGATGAAGCTGGCCGATGAAGCTCCCGATGATGACGCAACCAACCGATGGTTTGCGGTCGAGGCT GGGGCGCAGATCGCGATACGTCGACATGGCCCTTGGACCTGTTGGTCTCTCTTCCTCTCCCCCTCTCATTACCGC AGCAGGGCACGCCACAACAGGGCACACCACAGCAGGGCACACCACAGCAGGCCATCGGCACCGGACCGCGCCGCC CATCGCCGTCGCATGCCGCTCAAGAGCTTGGCGCTGCCCTTGCGGAGACTCCTGTCGACCTCATCTTCGGGTACG AACATTGCCATGCCACCCAAGCGCAAGCGGTCGGCCGCCCAGCCCGAAGCTCCGGCCAGACGCAGTACCCGGACC TCGAAAGTTGCCGCCGCTCTGCCCGACCCGACCGACGATGTGCTCAGTTCCAAGGAGGCCGTCGCGAAGGCCGTT CATGGACTGAGCGAGATGGAGCAGCGTCTGCACCGCGAGGTCAGAAAGCAGCGTCTTGCCGTTCAAAACTCCGAC TTGTGCCGTGACAAGCCTAAAACGACTCGCAAACCACCTGTTGAGGCTCAGACCAATGGGGGGAGTGCCGATACT AATGGGGCAGATGCCGAGGCTCAGACGGAACATGTCGCTCCGGAAAAGGGAGCCCGGAGACCGCCGGCTGTCAAC AGCGACAGGCTGCCTTTGCCCTGGTCTGGCAGGTTAGGTTATGTGAGGATGCCCGGACGGTCACGCTCGCAAGAC GGGCAGATGCTGACGGTAGCCTCCAGGCTTGTCTCAACACGTATCTTCGAGCAGCAACGCCGCCCGTCTTTTGCT CGCGGACGTGTCGATTGAGCTCCATCATTGACCACCGCCACCCCCTGGCGGACCCTTCACAGCCGGAGCATGCCA CCAAGAATCGACCTGACAAGACGAAGCCGGCCGAAGTTGAGAGAGGGCTCGCTTTCGTCCAGAGCCTGGGTGTCG CCAACGCAGCTGACATTCCCAAGATGCTTCGTTGGAACGATAGGTATGGCATCAAGTTTATGCGGCTGAGCAGTG AAATGTTCCCCTTTGCGAGCCACAAAGAGCACGGCTACAAGCTGGCGCCCTTTGCGTCCGACGTCTTGGCCGAGG CTGGCAGAGTCGCCGCCGAGCTGGGCCATCGTCTGACGACTCACCCGGGACAGTACACGCAGATCGGCAGTCCGC GGCCGGAGGTGGTTACGGCTGCGGTCCGAGACTTGGAGTATCACAACGAGCTGCTTTCCCTCCTGAAGCTCCCGG AGCAGCAGGACCGCGACGCCGTCATGATTCTGCACATGGGCGGCATGTTTGGCGACAAGGGCGCCACGCTCGATC GATTCCGTCAAGAATACGCCCGGTTATCAGACGGGGTGAAGCGCAGACTGGTACTAGAGAACGACGATGTCGTAT GGAACGTTCATGACTTACTCCCTATCTGCGAGGAACTCAACATTCCGCTCGTGCTCGACTTTCATCACCATAACA TCGTCTTCGATCCTGTTATGCGCGAGGGCACGCAGGACATCATAGGCTTGTTCGACCGCATCAAGGCTACGTGGA CGAGAAAAGGCATCAGGCAGAAGATGCACTACAGCGAGTCTACAGCCGCAGCCGTCACGTCGCGCGACCGCAGGA AGCACTCAGCTCGCGTCAAGACGCTACCACCTTGCGCCTCGGACATGGACCTCATGATTGAGGCCAAAGATAAGG AGCAGGCCGTCTTTGAGCTGATGCGGACTTTCAAACTCCCCGGCTGGGACCTCTTCAACGATGTAGTGCCGTACG AGCGCGATGATGAACCTCGCAAGGCGGTCGTCAAGAAGATCAAGAAGGGAAAAAAGGCCAGTGGCGAGGATCAGG TCGAGGTCATTGTGCCGGAAAGGGAGGTCGGTCCGGAGAGCGTCAGCATGGGCGGCACGGAGAAGCGCGTCTACT GGCCCGAGGGGATGGAGGAGTGGTTAAGGCCGAAGAAGCGGCAGGTGAACAAGGCCAACGGCAAGGCGGGCGCGG ACGAGGGTACGAATGGCGATGAGGAGGCTATCAAGGAGGAAGAGGAGGAACGGGAGGGTTAG |