© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3492 |
| Gene name | |
| Location | Contig_31:35920..36869 |
| Strand | - |
| Gene length (bp) | 949 |
| Transcript length (bp) | 783 |
| Coding sequence length (bp) | 783 |
| Protein length (aa) | 261 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01956 | EMC3_TMCO1 | Integral membrane protein EMC3/TMCO1-like | 4.7E-54 | 10 | 201 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P787|YNY3_SCHPO | ER membrane protein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.03 PE=3 SV=1 | 6 | 255 | 6.0E-79 |
| sp|Q5R7C1|EMC3_PONAB | ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 | 12 | 255 | 6.0E-52 |
| sp|Q9P0I2|EMC3_HUMAN | ER membrane protein complex subunit 3 OS=Homo sapiens GN=EMC3 PE=1 SV=3 | 12 | 255 | 6.0E-52 |
| sp|Q5U2V8|EMC3_RAT | ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 | 12 | 255 | 7.0E-52 |
| sp|Q99KI3|EMC3_MOUSE | ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3 | 12 | 255 | 7.0E-52 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P787|YNY3_SCHPO | ER membrane protein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.03 PE=3 SV=1 | 6 | 255 | 6.0E-79 |
| sp|Q5R7C1|EMC3_PONAB | ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 | 12 | 255 | 6.0E-52 |
| sp|Q9P0I2|EMC3_HUMAN | ER membrane protein complex subunit 3 OS=Homo sapiens GN=EMC3 PE=1 SV=3 | 12 | 255 | 6.0E-52 |
| sp|Q5U2V8|EMC3_RAT | ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 | 12 | 255 | 7.0E-52 |
| sp|Q99KI3|EMC3_MOUSE | ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3 | 12 | 255 | 7.0E-52 |
| sp|Q3ZCB8|EMC3_BOVIN | ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3 | 12 | 255 | 7.0E-52 |
| sp|P36039|EMC3_YEAST | ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC3 PE=1 SV=3 | 12 | 256 | 1.0E-51 |
| sp|A7A082|EMC3_YEAS7 | ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=AIM27 PE=3 SV=2 | 12 | 256 | 1.0E-51 |
| sp|B5VLV9|EMC3_YEAS6 | ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AIM27 PE=3 SV=2 | 12 | 256 | 4.0E-51 |
| sp|B3LQQ2|EMC3_YEAS1 | ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=AIM27 PE=3 SV=2 | 12 | 256 | 4.0E-51 |
| sp|Q7SXW4|EMC3_DANRE | ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=1 | 12 | 255 | 3.0E-50 |
| sp|Q54YN3|EMC3_DICDI | ER membrane protein complex subunit 3 OS=Dictyostelium discoideum GN=emc3 PE=3 SV=1 | 1 | 259 | 3.0E-35 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 126 | 148 | 22 |
| 3 | 175 | 197 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3492 MAQTPVQTLHRDPQLFYWILIPITVVMVLTGVLRHYASVLMSAAPKRVDARTMREQRALARGHALRSNFHVLSQR AFESRRQFLVDGYEAGTFLKDPDRKGQPPANPLSDPSQMDGMMSMMKNNMAMIIPNTLIMSWINAFFSGYVIMKL PFPITIKFKSMLQAGVQTKDMDPRWMSSISWYFLCIFGLQFVYVFLLGSDNAASQMAQQMAAQQMPMGPMGGPGQ DPDKQFKMEAENLAVVEHYSILDGVEERLLQGIKS* |
| Coding | >Ophun1|3492 ATGGCCCAGACACCCGTGCAGACCCTTCACAGGGACCCCCAGCTATTCTACTGGATCCTCATCCCCATCACCGTC GTCATGGTCCTCACGGGCGTGCTGCGCCACTATGCCTCGGTCCTCATGTCCGCGGCTCCCAAGCGCGTCGACGCT AGGACTATGCGCGAGCAGCGCGCACTCGCCCGCGGTCACGCCCTGCGCTCCAACTTTCACGTTCTCTCCCAGCGC GCGTTTGAGTCTCGACGCCAGTTTCTGGTCGATGGCTACGAGGCGGGGACTTTTCTCAAGGATCCTGATCGCAAG GGGCAGCCGCCTGCCAATCCGCTGAGCGATCCGAGTCAAATGGATGGCATGATGAGCATGATGAAGAACAACATG GCCATGATCATTCCCAACACGCTCATCATGAGCTGGATCAATGCTTTTTTCAGCGGCTACGTCATAATGAAACTC CCCTTTCCCATCACCATCAAGTTCAAGAGCATGCTGCAAGCCGGCGTGCAGACCAAGGACATGGATCCCCGGTGG ATGTCTAGCATCAGCTGGTACTTTCTGTGCATATTTGGCCTTCAGTTTGTCTACGTCTTTCTCCTCGGCAGCGAC AACGCCGCCAGCCAGATGGCTCAGCAGATGGCCGCCCAGCAGATGCCCATGGGGCCTATGGGCGGTCCCGGACAA GATCCGGACAAGCAGTTCAAGATGGAGGCCGAAAACCTTGCCGTGGTGGAGCACTACTCCATCTTGGACGGCGTC GAAGAGCGGCTTCTCCAGGGTATCAAGTCGTAG |
| Transcript | >Ophun1|3492 ATGGCCCAGACACCCGTGCAGACCCTTCACAGGGACCCCCAGCTATTCTACTGGATCCTCATCCCCATCACCGTC GTCATGGTCCTCACGGGCGTGCTGCGCCACTATGCCTCGGTCCTCATGTCCGCGGCTCCCAAGCGCGTCGACGCT AGGACTATGCGCGAGCAGCGCGCACTCGCCCGCGGTCACGCCCTGCGCTCCAACTTTCACGTTCTCTCCCAGCGC GCGTTTGAGTCTCGACGCCAGTTTCTGGTCGATGGCTACGAGGCGGGGACTTTTCTCAAGGATCCTGATCGCAAG GGGCAGCCGCCTGCCAATCCGCTGAGCGATCCGAGTCAAATGGATGGCATGATGAGCATGATGAAGAACAACATG GCCATGATCATTCCCAACACGCTCATCATGAGCTGGATCAATGCTTTTTTCAGCGGCTACGTCATAATGAAACTC CCCTTTCCCATCACCATCAAGTTCAAGAGCATGCTGCAAGCCGGCGTGCAGACCAAGGACATGGATCCCCGGTGG ATGTCTAGCATCAGCTGGTACTTTCTGTGCATATTTGGCCTTCAGTTTGTCTACGTCTTTCTCCTCGGCAGCGAC AACGCCGCCAGCCAGATGGCTCAGCAGATGGCCGCCCAGCAGATGCCCATGGGGCCTATGGGCGGTCCCGGACAA GATCCGGACAAGCAGTTCAAGATGGAGGCCGAAAACCTTGCCGTGGTGGAGCACTACTCCATCTTGGACGGCGTC GAAGAGCGGCTTCTCCAGGGTATCAAGTCGTAG |
| Gene | >Ophun1|3492 ATGGCCCAGACACCCGTGCAGACCCTTCACAGGGACCCCCAGCTATTGTCAGCACCGTCCTCAGCACGCTCCCTC GTCTCCAGCTGACAAGACGCGGCCTTCCAGCTACTGGATCCTCATCCCCATCACCGTCGTCATGGTCCTCACGGG CGTGCTGCGCCACTATGCCTCGGTCCTCATGTCCGCGGCTCCCAAGCGCGTCGACGCTAGGACTATGCGCGAGCA GCGCGCACTCGCCCGCGGTCACGCCCTGCGCTCCAACTTTCACGTTCTCTCCCAGCGCGCGTTTGAGTCTCGACG CCAGTTTCTGGTCGATGGCTACGAGGCGGGGACTTTTCTCAAGGATCCTGATCGCAAGGGGCAGCCGCCTGCCAA TCCGCTGAGCGATCCGAGTCAAATGGATGGCATGATGAGCATGATGAAGAACAACATGGCCATGATCATTCCCAA CACGCTCATCATGAGCTGGATCAATGCTTTTTTCAGCGGCTACGTCATAAGTAATCCGCCCAAGGATCTATCCGT TACCCGATCGCAGCTGATATCCGTCAGTGAAACTCCCCTTTCCCATCACCATCAAGTTCAAGAGCATGCTGCAAG CCGGCGTGCAGACCAAGGACATGGATCCCCGGTGGATGTCTAGCATCAGCTGGTACTTTCTGTGCATATTTGGCC TTCAGTTTGTCTACGTCTTTCTCCTCGGCAGCGACAACGGTGAGCCCTTCTTCCTGTCAGGTCTTGCCTGCGTCC CCGCGCTGATCCGACGACAGCCGCCAGCCAGATGGCTCAGCAGATGGCCGCCCAGCAGATGCCCATGGGGCCTAT GGGCGGTCCCGGACAAGATCCGGACAAGCAGTTCAAGATGGAGGCCGAAAACCTTGCCGTGGTGGAGCACTACTC CATCTTGGACGGCGTCGAAGAGCGGCTTCTCCAGGGTATCAAGTCGTAG |