© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3488 |
| Gene name | |
| Location | Contig_31:29219..29624 |
| Strand | - |
| Gene length (bp) | 405 |
| Transcript length (bp) | 336 |
| Coding sequence length (bp) | 336 |
| Protein length (aa) | 112 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00428 | Ribosomal_60s | 60s Acidic ribosomal protein | 1.5E-25 | 17 | 110 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9C3Z5|RLA2_PODAS | 60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1 | 1 | 111 | 1.0E-31 |
| sp|Q96UQ7|RLA2_RHOGU | 60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1 | 1 | 111 | 4.0E-29 |
| sp|P90703|RLA2_BRUMA | 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1 | 1 | 111 | 2.0E-28 |
| sp|P17478|RLA4_SCHPO | 60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp202 PE=1 SV=1 | 1 | 111 | 8.0E-28 |
| sp|O14317|RLA6_SCHPO | 60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp203 PE=1 SV=2 | 1 | 111 | 3.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9C3Z5|RLA2_PODAS | 60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1 | 1 | 111 | 1.0E-31 |
| sp|Q96UQ7|RLA2_RHOGU | 60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1 | 1 | 111 | 4.0E-29 |
| sp|P90703|RLA2_BRUMA | 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1 | 1 | 111 | 2.0E-28 |
| sp|P17478|RLA4_SCHPO | 60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp202 PE=1 SV=1 | 1 | 111 | 8.0E-28 |
| sp|O14317|RLA6_SCHPO | 60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp203 PE=1 SV=2 | 1 | 111 | 3.0E-27 |
| sp|P42037|RLA2_ALTAL | 60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1 | 1 | 111 | 1.0E-26 |
| sp|P08094|RLA2_SCHPO | 60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpp201 PE=1 SV=1 | 1 | 69 | 5.0E-26 |
| sp|O24415|RLA2B_MAIZE | 60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1 | 1 | 111 | 1.0E-24 |
| sp|Q8TFM9|RLA2_FUSCU | 60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1 | 1 | 111 | 2.0E-24 |
| sp|Q9HFQ4|RLA4_CANAX | 60S acidic ribosomal protein P2-B OS=Candida albicans GN=RPP2B PE=1 SV=1 | 1 | 111 | 6.0E-23 |
| sp|P42899|RLA2_BOVIN | 60S acidic ribosomal protein P2 OS=Bos taurus GN=RPLP2 PE=3 SV=1 | 1 | 111 | 1.0E-22 |
| sp|Q9LXM8|RLA24_ARATH | 60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1 | 1 | 111 | 2.0E-22 |
| sp|P02399|RLA2_ARTSA | 60S acidic ribosomal protein P2 OS=Artemia salina PE=1 SV=1 | 1 | 111 | 2.0E-22 |
| sp|O61463|RLA2_CRYST | 60S acidic ribosomal protein P2 OS=Cryptochiton stelleri PE=3 SV=1 | 1 | 111 | 3.0E-22 |
| sp|Q9UUZ6|RLA2_ASPFU | 60S acidic ribosomal protein P2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_2G10100 PE=1 SV=2 | 1 | 111 | 3.0E-22 |
| sp|P46252|RLA2A_MAIZE | 60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3 | 1 | 111 | 8.0E-22 |
| sp|P99027|RLA2_MOUSE | 60S acidic ribosomal protein P2 OS=Mus musculus GN=Rplp2 PE=1 SV=3 | 1 | 66 | 1.0E-21 |
| sp|Q6X9Z5|RLA2_HORSE | 60S acidic ribosomal protein P2 OS=Equus caballus GN=RPLP2 PE=3 SV=1 | 1 | 66 | 2.0E-21 |
| sp|P05387|RLA2_HUMAN | 60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1 | 1 | 66 | 2.0E-21 |
| sp|O01725|RLA2_BRAFL | 60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1 | 1 | 111 | 7.0E-21 |
| sp|Q29315|RLA2_PIG | 60S acidic ribosomal protein P2 OS=Sus scrofa GN=RPLP2 PE=3 SV=1 | 1 | 111 | 1.0E-20 |
| sp|P02401|RLA2_RAT | 60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2 | 1 | 66 | 3.0E-20 |
| sp|P41099|RLA2_PARAR | 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1 | 1 | 67 | 4.0E-19 |
| sp|P42039|RLA2_DAVTA | 60S acidic ribosomal protein P2 OS=Davidiella tassiana GN=CLAH5 PE=1 SV=3 | 15 | 111 | 6.0E-19 |
| sp|P02400|RLA4_YEAST | 60S acidic ribosomal protein P2-beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP2B PE=1 SV=2 | 1 | 111 | 2.0E-17 |
| sp|Q9LH85|RLA23_ARATH | 60S acidic ribosomal protein P2-3 OS=Arabidopsis thaliana GN=RPP2C PE=1 SV=1 | 1 | 111 | 2.0E-16 |
| sp|P51407|RLA21_ARATH | 60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2 | 1 | 111 | 3.0E-16 |
| sp|Q9GPU2|RLA2_EUPRA | 60S acidic ribosomal protein P2 OS=Euplotes raikovi PE=3 SV=1 | 1 | 65 | 6.0E-16 |
| sp|O01504|RLA2_CAEEL | 60S acidic ribosomal protein P2 OS=Caenorhabditis elegans GN=rpa-2 PE=3 SV=2 | 1 | 111 | 1.0E-15 |
| sp|P05389|RLA2_DROME | 60S acidic ribosomal protein P2 OS=Drosophila melanogaster GN=RpLP2 PE=1 SV=1 | 1 | 66 | 1.0E-14 |
| sp|Q9HFQ5|RLA2_CANAX | 60S acidic ribosomal protein P2-A OS=Candida albicans GN=RPP2A PE=1 SV=1 | 1 | 111 | 1.0E-14 |
| sp|Q9SLF7|RLA22_ARATH | 60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1 | 1 | 62 | 3.0E-14 |
| sp|P50879|RLA2_TAESO | 60S acidic ribosomal protein P2 OS=Taenia solium PE=2 SV=1 | 1 | 111 | 1.0E-13 |
| sp|P22683|RLA2_DICDI | 60S acidic ribosomal protein P2 OS=Dictyostelium discoideum GN=rplp2 PE=1 SV=3 | 1 | 111 | 3.0E-13 |
| sp|P19943|RLA2_RABIT | 60S acidic ribosomal protein P2 (Fragment) OS=Oryctolagus cuniculus GN=RPLP2 PE=1 SV=1 | 1 | 44 | 4.0E-13 |
| sp|Q967Y9|RLA2_EIMTE | 60S acidic ribosomal protein P2 OS=Eimeria tenella PE=3 SV=2 | 1 | 67 | 1.0E-12 |
| sp|O00806|RLA2_PLAF7 | 60S acidic ribosomal protein P2 OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P3.19 PE=3 SV=1 | 1 | 65 | 2.0E-12 |
| sp|P51408|RLA2_TRYBB | 60S acidic ribosomal protein P2 OS=Trypanosoma brucei brucei PE=3 SV=1 | 1 | 111 | 3.0E-12 |
| sp|O44010|RLA2_LEIBR | 60S acidic ribosomal protein P2 OS=Leishmania braziliensis GN=LIP2 PE=1 SV=1 | 1 | 111 | 7.0E-12 |
| sp|Q9LUK2|RLA25_ARATH | 60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana GN=RPP2E PE=3 SV=1 | 1 | 65 | 2.0E-11 |
| sp|P23632|RLA2_TRYCR | 60S acidic ribosomal protein P2-A OS=Trypanosoma cruzi PE=1 SV=1 | 1 | 111 | 3.0E-11 |
| sp|P27055|RLA2_BABBO | 60S acidic ribosomal protein P2 OS=Babesia bovis PE=3 SV=1 | 1 | 111 | 1.0E-09 |
| sp|P05390|RLA2_WHEAT | 60S acidic ribosomal protein P2 (Fragment) OS=Triticum aestivum PE=1 SV=1 | 1 | 42 | 2.0E-09 |
| sp|Q06383|RLA2_LEIIN | 60S acidic ribosomal protein P2-1 OS=Leishmania infantum GN=LIP PE=2 SV=1 | 1 | 111 | 4.0E-09 |
| sp|Q06382|RLA3_LEIIN | 60S acidic ribosomal protein P2-2 OS=Leishmania infantum GN=LIP' PE=2 SV=1 | 2 | 111 | 2.0E-08 |
| sp|O43940|RLA2_LEIDO | 60S acidic ribosomal protein P2 OS=Leishmania donovani GN=ARP-1 PE=3 SV=1 | 1 | 111 | 3.0E-08 |
| sp|P05319|RLA2_YEAST | 60S acidic ribosomal protein P2-alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP2A PE=1 SV=1 | 17 | 111 | 1.0E-07 |
| sp|P26795|RLA3_TRYCR | 60S acidic ribosomal protein P2-B OS=Trypanosoma cruzi PE=3 SV=1 | 1 | 111 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3488 MKHLAAYLLLGLGGNASPSAKDIEDVLGAVGIEADKDRLEKLISELKGKDINELIAAGSEKLASVPSGGGGGGGA AAGGAAAGGAADAPAEAAKEEEKEESDEDMGFGLFD* |
| Coding | >Ophun1|3488 ATGAAGCATCTCGCAGCTTACCTTCTCCTCGGCCTCGGAGGCAACGCCTCGCCTTCTGCCAAGGATATTGAGGAT GTCCTCGGCGCCGTTGGCATTGAGGCTGATAAGGACCGTCTGGAGAAGCTCATCTCTGAGCTCAAGGGCAAGGAC ATCAACGAGCTCATCGCCGCTGGATCCGAGAAACTCGCCTCCGTTCCCTCTGGTGGTGGTGGTGGTGGCGGTGCC GCTGCTGGTGGTGCTGCTGCTGGCGGTGCTGCCGATGCGCCCGCCGAGGCGGCCAAGGAGGAGGAGAAGGAGGAG TCGGATGAGGATATGGGCTTCGGTCTGTTCGACTAA |
| Transcript | >Ophun1|3488 ATGAAGCATCTCGCAGCTTACCTTCTCCTCGGCCTCGGAGGCAACGCCTCGCCTTCTGCCAAGGATATTGAGGAT GTCCTCGGCGCCGTTGGCATTGAGGCTGATAAGGACCGTCTGGAGAAGCTCATCTCTGAGCTCAAGGGCAAGGAC ATCAACGAGCTCATCGCCGCTGGATCCGAGAAACTCGCCTCCGTTCCCTCTGGTGGTGGTGGTGGTGGCGGTGCC GCTGCTGGTGGTGCTGCTGCTGGCGGTGCTGCCGATGCGCCCGCCGAGGCGGCCAAGGAGGAGGAGAAGGAGGAG TCGGATGAGGATATGGGCTTCGGTCTGTTCGACTAA |
| Gene | >Ophun1|3488 ATGAAGCATCTCGCAGCTTACCTTCTCCTCGGCCTCGGAGGCAACGCCTCGCCTTCTGCCAAGGATATTGAGGAT GTCCTCGGCGCCGTTGGCATTGAGGCTGATAAGGACCGTCTGGAGAAGCTCATCTCTGAGCTCAAGGGCAAGGAC ATCAACGAGGTACATGGGCGACTTTCCCTGCTCTTCCCGTCTTCTCACCTTGACATACTGACGATTTCTTTCTCG CAGCTCATCGCCGCTGGATCCGAGAAACTCGCCTCCGTTCCCTCTGGTGGTGGTGGTGGTGGCGGTGCCGCTGCT GGTGGTGCTGCTGCTGGCGGTGCTGCCGATGCGCCCGCCGAGGCGGCCAAGGAGGAGGAGAAGGAGGAGTCGGAT GAGGATATGGGCTTCGGTCTGTTCGACTAA |