Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|3472
Gene name
LocationContig_309:5150..5612
Strand+
Gene length (bp)462
Transcript length (bp)462
Coding sequence length (bp)462
Protein length (aa) 154

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07543 PGA2 Protein trafficking PGA2 4.5E-38 29 152

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9P6S6|PGA2_SCHPO PGA2-homolog C27.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC27.01c PE=1 SV=1 24 153 8.0E-11
sp|P53903|PGA2_YEAST Processing of GAS1 and ALP protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PGA2 PE=1 SV=3 37 153 4.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 42 61 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|3472
MENQQQQPELNALGKLIARVVEYGQNASNNLQDSFSNLSLQSWIRLIVIVGGYMLLRPYVMKLATKTAVRKLEEE
DAKSRSAVKAEPQLTPNEFRGIKEKLYEMPDEGDGTGADWGSKARTRQRQMLKDLLDEEERRRAAENEDADIQEF
LED*
Coding >Ophun1|3472
ATGGAGAACCAGCAGCAGCAGCCGGAGCTCAACGCCCTCGGCAAGTTAATCGCCCGCGTGGTCGAGTACGGTCAA
AACGCCAGCAACAACCTGCAGGATAGCTTTTCCAATCTTTCCCTGCAATCATGGATCCGCCTCATTGTCATTGTT
GGAGGGTACATGCTGCTGCGGCCATACGTCATGAAGCTGGCTACCAAGACTGCGGTCCGCAAGCTGGAAGAGGAA
GACGCCAAGTCGCGGAGCGCAGTTAAAGCCGAGCCGCAATTAACGCCAAACGAGTTTCGCGGCATCAAAGAGAAG
CTATACGAGATGCCCGACGAAGGCGATGGGACTGGCGCCGACTGGGGAAGCAAGGCAAGGACGCGGCAGCGGCAG
ATGCTCAAGGATCTCCTCGATGAGGAAGAGAGACGGCGAGCGGCAGAAAACGAGGACGCCGATATTCAGGAGTTC
TTGGAGGACTGA
Transcript >Ophun1|3472
ATGGAGAACCAGCAGCAGCAGCCGGAGCTCAACGCCCTCGGCAAGTTAATCGCCCGCGTGGTCGAGTACGGTCAA
AACGCCAGCAACAACCTGCAGGATAGCTTTTCCAATCTTTCCCTGCAATCATGGATCCGCCTCATTGTCATTGTT
GGAGGGTACATGCTGCTGCGGCCATACGTCATGAAGCTGGCTACCAAGACTGCGGTCCGCAAGCTGGAAGAGGAA
GACGCCAAGTCGCGGAGCGCAGTTAAAGCCGAGCCGCAATTAACGCCAAACGAGTTTCGCGGCATCAAAGAGAAG
CTATACGAGATGCCCGACGAAGGCGATGGGACTGGCGCCGACTGGGGAAGCAAGGCAAGGACGCGGCAGCGGCAG
ATGCTCAAGGATCTCCTCGATGAGGAAGAGAGACGGCGAGCGGCAGAAAACGAGGACGCCGATATTCAGGAGTTC
TTGGAGGACTGA
Gene >Ophun1|3472
ATGGAGAACCAGCAGCAGCAGCCGGAGCTCAACGCCCTCGGCAAGTTAATCGCCCGCGTGGTCGAGTACGGTCAA
AACGCCAGCAACAACCTGCAGGATAGCTTTTCCAATCTTTCCCTGCAATCATGGATCCGCCTCATTGTCATTGTT
GGAGGGTACATGCTGCTGCGGCCATACGTCATGAAGCTGGCTACCAAGACTGCGGTCCGCAAGCTGGAAGAGGAA
GACGCCAAGTCGCGGAGCGCAGTTAAAGCCGAGCCGCAATTAACGCCAAACGAGTTTCGCGGCATCAAAGAGAAG
CTATACGAGATGCCCGACGAAGGCGATGGGACTGGCGCCGACTGGGGAAGCAAGGCAAGGACGCGGCAGCGGCAG
ATGCTCAAGGATCTCCTCGATGAGGAAGAGAGACGGCGAGCGGCAGAAAACGAGGACGCCGATATTCAGGAGTTC
TTGGAGGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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