© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3371 |
| Gene name | |
| Location | Contig_3:94528..95919 |
| Strand | + |
| Gene length (bp) | 1391 |
| Transcript length (bp) | 1290 |
| Coding sequence length (bp) | 1290 |
| Protein length (aa) | 430 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00180 | Iso_dh | Isocitrate/isopropylmalate dehydrogenase | 1.4E-73 | 28 | 418 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SRZ6|ICDHC_ARATH | Cytosolic isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana GN=CICDH PE=2 SV=1 | 25 | 418 | 0.0E+00 |
| sp|Q9Z2K9|IDHC_MICME | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1 | 32 | 415 | 0.0E+00 |
| sp|P50217|IDHC_SOLTU | Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 | 25 | 418 | 0.0E+00 |
| sp|P41562|IDHC_RAT | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1 | 18 | 415 | 0.0E+00 |
| sp|P50218|IDHC_TOBAC | Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 | 25 | 418 | 0.0E+00 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SRZ6|ICDHC_ARATH | Cytosolic isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana GN=CICDH PE=2 SV=1 | 25 | 418 | 0.0E+00 |
| sp|Q9Z2K9|IDHC_MICME | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1 | 32 | 415 | 0.0E+00 |
| sp|P50217|IDHC_SOLTU | Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 | 25 | 418 | 0.0E+00 |
| sp|P41562|IDHC_RAT | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1 | 18 | 415 | 0.0E+00 |
| sp|P50218|IDHC_TOBAC | Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 | 25 | 418 | 0.0E+00 |
| sp|P50215|IDH_SPHYA | Isocitrate dehydrogenase [NADP] OS=Sphingobium yanoikuyae GN=icd PE=3 SV=1 | 25 | 418 | 0.0E+00 |
| sp|Q5R9C5|IDHC_PONAB | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2 | 32 | 415 | 0.0E+00 |
| sp|Q8LPJ5|ICDHP_ARATH | Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At5g14590 PE=2 SV=1 | 25 | 422 | 0.0E+00 |
| sp|Q9SLK0|ICDHX_ARATH | Peroxisomal isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana GN=ICDH PE=1 SV=1 | 25 | 418 | 0.0E+00 |
| sp|P21954|IDHP_YEAST | Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDP1 PE=1 SV=1 | 8 | 424 | 0.0E+00 |
| sp|O75874|IDHC_HUMAN | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2 | 32 | 415 | 0.0E+00 |
| sp|O88844|IDHC_MOUSE | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=2 | 32 | 415 | 0.0E+00 |
| sp|Q75JR2|IDHP_DICDI | Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1 | 25 | 418 | 0.0E+00 |
| sp|P9WKL1|IDH_MYCTU | Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=icd PE=1 SV=1 | 25 | 424 | 0.0E+00 |
| sp|P9WKL0|IDH_MYCTO | Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=icd PE=3 SV=1 | 25 | 424 | 0.0E+00 |
| sp|P65098|IDH_MYCBO | Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=icd PE=3 SV=1 | 25 | 424 | 0.0E+00 |
| sp|Q75JR3|IDHC_DICDI | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1 | 22 | 418 | 0.0E+00 |
| sp|Q6XUZ5|IDHC_SHEEP | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1 | 32 | 415 | 0.0E+00 |
| sp|P79089|IDHP_ASPNG | Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1 | 8 | 422 | 0.0E+00 |
| sp|O13285|IDH1_CANTR | Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1 | 25 | 424 | 0.0E+00 |
| sp|O13294|IDH2_CANTR | Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3 | 25 | 424 | 0.0E+00 |
| sp|P41939|IDHC_YEAST | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDP2 PE=1 SV=2 | 24 | 424 | 0.0E+00 |
| sp|Q04467|IDHP_BOVIN | Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 | 25 | 425 | 0.0E+00 |
| sp|Q4R502|IDHP_MACFA | Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 | 25 | 397 | 0.0E+00 |
| sp|Q06197|IDHC_SOYBN | Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 | 25 | 418 | 0.0E+00 |
| sp|P48735|IDHP_HUMAN | Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 | 25 | 397 | 0.0E+00 |
| sp|O14254|IDHP_SCHPO | Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=idp1 PE=3 SV=2 | 19 | 422 | 0.0E+00 |
| sp|P33198|IDHP_PIG | Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 | 25 | 425 | 0.0E+00 |
| sp|P54071|IDHP_MOUSE | Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 | 25 | 424 | 0.0E+00 |
| sp|P56574|IDHP_RAT | Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 | 25 | 424 | 0.0E+00 |
| sp|P53982|IDHH_YEAST | Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDP3 PE=3 SV=1 | 24 | 422 | 0.0E+00 |
| sp|Q40345|IDHP_MEDSA | Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 | 25 | 422 | 0.0E+00 |
| sp|Q9XSG3|IDHC_BOVIN | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1 | 32 | 415 | 0.0E+00 |
| sp|Q9Z2K8|IDHC_MICOH | Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1 | 32 | 415 | 0.0E+00 |
| sp|Q4FP17|LEU3_PELUB | 3-isopropylmalate dehydrogenase OS=Pelagibacter ubique (strain HTCC1062) GN=leuB PE=3 SV=1 | 183 | 406 | 5.0E-11 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3371 MNSPLFRLSRITFRLSRFTRKMHTKIKVRNPVVELDGDEMTRVIWKDIKQRFILPYLDIDLKYYDLGLEYRDETD DQVTLDAAEAIKKYSVGVKCATITPDEARVKEFNLKKMWLSPNGTIRNALGGTVFREPIVIPRIPRLIPGWKKPI IIGRHAFGDQYRAKDMVVPGPGKLSMVYTPDGGSPQEIQVFRFEGGGVGQTQYNTDESITGFAHASFKLAIDKCL PLYMSTKNTILKKYDGRFKDIFQHLYDTQYKTEFEAKGIWYEHRLIDDMVAQMIKSSGGYIMALKNYDGDVQSDI VAQGFGSLGLMTSVLITPDGKTFESEAAHGTVTRHYREHQKGKETSTNPIASIFAWTRGLAQRGKLDGTPELVAF AERLEKACVDTVDDGIMTKDLALACGNKERSGYVTTSEYMTAVERRIGKGGMKL* |
| Coding | >Ophun1|3371 ATGAACTCACCACTCTTCCGCCTCAGCCGCATCACCTTCCGCCTCTCCCGCTTCACCCGCAAAATGCACACCAAA ATCAAGGTCCGCAATCCCGTCGTCGAGCTCGACGGCGACGAAATGACGCGCGTCATCTGGAAAGACATCAAGCAG CGCTTCATCCTCCCCTACCTCGACATCGACCTCAAGTACTACGACCTCGGCCTCGAGTATCGCGACGAGACCGAC GATCAAGTCACGCTCGACGCCGCAGAGGCCATCAAGAAATACTCCGTCGGCGTCAAGTGCGCCACCATAACGCCT GACGAGGCTCGCGTCAAGGAATTCAACCTCAAGAAGATGTGGCTCTCTCCCAACGGCACCATCCGCAACGCCCTC GGCGGCACCGTCTTTCGAGAACCCATCGTCATCCCTCGGATTCCCCGCCTGATTCCGGGCTGGAAGAAGCCCATC ATCATCGGCCGCCACGCGTTTGGCGATCAATACCGCGCCAAAGACATGGTCGTTCCTGGGCCGGGGAAGCTGTCC ATGGTTTATACTCCGGATGGCGGCTCTCCCCAAGAGATACAGGTGTTTCGCTTCGAGGGGGGGGGTGTGGGACAG ACGCAGTACAATACGGACGAGTCCATCACCGGTTTTGCCCACGCCTCCTTCAAGCTCGCCATCGACAAGTGCCTC CCGTTATACATGAGCACCAAAAACACCATCCTCAAGAAATACGACGGCCGCTTCAAGGACATTTTCCAACACCTC TACGACACGCAGTACAAGACCGAGTTCGAAGCAAAAGGCATCTGGTACGAGCACCGCCTGATCGACGACATGGTG GCCCAGATGATCAAGAGCAGCGGCGGCTACATTATGGCTTTGAAGAACTACGACGGAGACGTCCAGTCCGACATT GTCGCCCAAGGCTTCGGCTCCCTCGGCCTCATGACCTCGGTGCTCATCACCCCCGACGGCAAGACGTTTGAATCG GAAGCCGCCCACGGCACGGTAACGCGCCACTACCGGGAGCACCAAAAAGGAAAGGAGACGTCTACCAACCCCATT GCCTCTATATTTGCCTGGACGCGCGGGCTGGCTCAGCGGGGGAAGCTGGACGGAACGCCGGAGCTGGTTGCCTTT GCGGAGCGGTTGGAAAAGGCGTGCGTCGATACCGTCGACGATGGCATCATGACAAAGGACCTCGCTCTGGCGTGT GGGAACAAGGAGCGCTCTGGCTATGTGACGACGTCGGAGTACATGACGGCCGTTGAGCGGAGGATAGGGAAAGGG GGGATGAAGCTGTGA |
| Transcript | >Ophun1|3371 ATGAACTCACCACTCTTCCGCCTCAGCCGCATCACCTTCCGCCTCTCCCGCTTCACCCGCAAAATGCACACCAAA ATCAAGGTCCGCAATCCCGTCGTCGAGCTCGACGGCGACGAAATGACGCGCGTCATCTGGAAAGACATCAAGCAG CGCTTCATCCTCCCCTACCTCGACATCGACCTCAAGTACTACGACCTCGGCCTCGAGTATCGCGACGAGACCGAC GATCAAGTCACGCTCGACGCCGCAGAGGCCATCAAGAAATACTCCGTCGGCGTCAAGTGCGCCACCATAACGCCT GACGAGGCTCGCGTCAAGGAATTCAACCTCAAGAAGATGTGGCTCTCTCCCAACGGCACCATCCGCAACGCCCTC GGCGGCACCGTCTTTCGAGAACCCATCGTCATCCCTCGGATTCCCCGCCTGATTCCGGGCTGGAAGAAGCCCATC ATCATCGGCCGCCACGCGTTTGGCGATCAATACCGCGCCAAAGACATGGTCGTTCCTGGGCCGGGGAAGCTGTCC ATGGTTTATACTCCGGATGGCGGCTCTCCCCAAGAGATACAGGTGTTTCGCTTCGAGGGGGGGGGTGTGGGACAG ACGCAGTACAATACGGACGAGTCCATCACCGGTTTTGCCCACGCCTCCTTCAAGCTCGCCATCGACAAGTGCCTC CCGTTATACATGAGCACCAAAAACACCATCCTCAAGAAATACGACGGCCGCTTCAAGGACATTTTCCAACACCTC TACGACACGCAGTACAAGACCGAGTTCGAAGCAAAAGGCATCTGGTACGAGCACCGCCTGATCGACGACATGGTG GCCCAGATGATCAAGAGCAGCGGCGGCTACATTATGGCTTTGAAGAACTACGACGGAGACGTCCAGTCCGACATT GTCGCCCAAGGCTTCGGCTCCCTCGGCCTCATGACCTCGGTGCTCATCACCCCCGACGGCAAGACGTTTGAATCG GAAGCCGCCCACGGCACGGTAACGCGCCACTACCGGGAGCACCAAAAAGGAAAGGAGACGTCTACCAACCCCATT GCCTCTATATTTGCCTGGACGCGCGGGCTGGCTCAGCGGGGGAAGCTGGACGGAACGCCGGAGCTGGTTGCCTTT GCGGAGCGGTTGGAAAAGGCGTGCGTCGATACCGTCGACGATGGCATCATGACAAAGGACCTCGCTCTGGCGTGT GGGAACAAGGAGCGCTCTGGCTATGTGACGACGTCGGAGTACATGACGGCCGTTGAGCGGAGGATAGGGAAAGGG GGGATGAAGCTGTGA |
| Gene | >Ophun1|3371 ATGAACTCACCACTCTTCCGCCTCAGCCGCATCACCTTCCGCCTCTCCCGCTTCACCCGCAAAATGCACACCAAA ATCAAGGTCCGCAATCCCGTCGTCGAGCTCGACGGCGACGAAATGACGCGCGTCATCTGGAAAGACATCAAGCAG CGCTTCATCCTCCCCTACCTCGACATCGACCTCAAGTACTACGACCTCGGCCTCGAGTATCGCGACGAGACCGAC GATCAAGTCACGCTCGACGCCGCAGAGGCCATCAAGAAATACTCCGTCGGCGTCAAGTGCGCCACCATAACGCCT GACGAGGCTCGCGTCAAGGAATTCAACCTCAAGAAGAGTAAGTCCACGGAAAGTCCACGAGAAGTCCGCGACTCG ACTGATATCTGACCCCAGTGTGGCTCTCTCCCAACGGCACCATCCGCAACGCCCTCGGCGGCACCGTCTTTCGAG AACCCATCGTCATCCCTCGGATTCCCCGCCTGATTCCGGGCTGGAAGAAGCCCATCATCATCGGCCGCCACGCGT TTGGCGATCAATACCGCGCCAAAGACATGGTCGTTCCTGGGCCGGGGAAGCTGTCCATGGTTTATACTCCGGATG GCGGCTCTCCCCAAGAGATACAGGTGTTTCGCTTCGAGGGGGGGGGTGTGGGACAGACGCAGTACAATACGGACG AGTCCATCACCGGTTTTGCCCACGCCTCCTTCAAGCTCGCCATCGACAAGTGCCTCCCGTTATACATGAGCACCA AAAACACCATCCTCAAGAAATACGACGGCCGCTTCAAGGACATTTTCCAACACCTCTACGACACGCAGTACAAGA CCGAGTTCGAAGCAAAAGGCATCTGGTACGAGCACCGCCTGATCGACGACATGGTGGCCCAGATGATCAAGAGCA GCGGCGGCTACATTATGGCTTTGAAGAGTAAGCCGTCTCGTCAGAAGTCTATGATCTCGCTAATCCTTCTAGACT ACGACGGAGACGTCCAGTCCGACATTGTCGCCCAAGGCTTCGGCTCCCTCGGCCTCATGACCTCGGTGCTCATCA CCCCCGACGGCAAGACGTTTGAATCGGAAGCCGCCCACGGCACGGTAACGCGCCACTACCGGGAGCACCAAAAAG GAAAGGAGACGTCTACCAACCCCATTGCCTCTATATTTGCCTGGACGCGCGGGCTGGCTCAGCGGGGGAAGCTGG ACGGAACGCCGGAGCTGGTTGCCTTTGCGGAGCGGTTGGAAAAGGCGTGCGTCGATACCGTCGACGATGGCATCA TGACAAAGGACCTCGCTCTGGCGTGTGGGAACAAGGAGCGCTCTGGCTATGTGACGACGTCGGAGTACATGACGG CCGTTGAGCGGAGGATAGGGAAAGGGGGGATGAAGCTGTGA |