© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3350 |
| Gene name | |
| Location | Contig_3:31924..33944 |
| Strand | - |
| Gene length (bp) | 2020 |
| Transcript length (bp) | 1929 |
| Coding sequence length (bp) | 1929 |
| Protein length (aa) | 643 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04065 | Not3 | Not1 N-terminal domain, CCR4-Not complex component | 8.0E-89 | 3 | 231 |
| PF04153 | NOT2_3_5 | NOT2 / NOT3 / NOT5 family | 4.6E-43 | 510 | 638 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13870|NOT3_SCHPO | General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2 | 1 | 641 | 2.0E-142 |
| sp|Q8K0V4|CNOT3_MOUSE | CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 | 4 | 232 | 6.0E-64 |
| sp|O75175|CNOT3_HUMAN | CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 | 4 | 232 | 3.0E-63 |
| sp|P06102|NOT3_YEAST | General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2 | 1 | 357 | 3.0E-61 |
| sp|Q12514|NOT5_YEAST | General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1 | 1 | 320 | 2.0E-47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13870|NOT3_SCHPO | General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2 | 1 | 641 | 2.0E-142 |
| sp|Q8K0V4|CNOT3_MOUSE | CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 | 4 | 232 | 6.0E-64 |
| sp|O75175|CNOT3_HUMAN | CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 | 4 | 232 | 3.0E-63 |
| sp|P06102|NOT3_YEAST | General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2 | 1 | 357 | 3.0E-61 |
| sp|Q12514|NOT5_YEAST | General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1 | 1 | 320 | 2.0E-47 |
| sp|Q8K0V4|CNOT3_MOUSE | CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 | 506 | 640 | 7.0E-34 |
| sp|O75175|CNOT3_HUMAN | CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 | 506 | 640 | 1.0E-33 |
| sp|Q12514|NOT5_YEAST | General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1 | 551 | 635 | 5.0E-11 |
| sp|P87240|NOT2_SCHPO | General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2 | 373 | 640 | 2.0E-10 |
| sp|Q9NZN8|CNOT2_HUMAN | CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 | 555 | 640 | 1.0E-09 |
| sp|Q8C5L3|CNOT2_MOUSE | CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=1 SV=2 | 555 | 640 | 1.0E-09 |
| sp|Q52JK6|VIP2_NICBE | Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 | 539 | 639 | 2.0E-09 |
| sp|Q9FPW4|VIP2_ARATH | Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 | 553 | 639 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0043226 | organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3350 MAARKLQQEVDKCFKKVAEGVAEFEAIYEKIEQSNNPAQKEKLEDNLKREIKKLQRLRDQIKTWAASNDIKDKAP LLEHRKLIETQMEKFKAVEKAMKTKAYSKEGLSAAAKLDPKEQAKLEASEFLSSMVDELEQQIEALEAEGESIQA TMKKGKNQGSKADRMAEIERVIERHKWHQGKLELIRRSLENGGIETDQVNDLEDSIRFYVTEGGTDEYMDDDELY NDLNLEDDEGVFGMNQDGEKNSSLDTQSVHDEVAEPEPPAKATGRRAQRAEAEAAAASGGGGTGSSSGSGRKTTV PTKSPLPALATLHTPLTTIGGGAASGPVMKPAAVPTRPAGEGLKYASAAAAAAASDRNNVGIAPLPPPPGAVTQP KTSATSSPASTSIQPTPTSAEPKPPAGESETAPAAAPTTTSSRSSRRARSAGKQAATQAAGESSDRPAASRTDPT QSQANGATNGIKPIAEEPEEECIYHLPSSLNDLVDTYDTSRKRPAPSSASTSTLRMMTASQSSCPDLADVEVPRS YKPDVPAINISSGFPREPLPIFDDPRLYSRIDPDTLFYVFYYKQGTAQQYLAAKALKDQSWRFHKQYQTWFQRHE EPKNITEEFEQGTYRFFDYESTWMNRRKADFKFAYKFLEDDI* |
| Coding | >Ophun1|3350 ATGGCGGCCCGAAAACTGCAACAAGAGGTCGACAAGTGCTTCAAAAAGGTGGCCGAGGGCGTTGCCGAGTTCGAG GCCATCTACGAAAAGATTGAGCAGTCCAACAACCCGGCGCAAAAGGAAAAGCTCGAGGACAACCTCAAACGAGAA ATCAAGAAGCTGCAACGGCTGCGCGACCAGATAAAGACATGGGCGGCCAGCAACGACATCAAGGACAAGGCTCCT CTGCTCGAGCACCGCAAGCTAATAGAAACGCAAATGGAAAAGTTCAAGGCCGTCGAAAAGGCAATGAAGACAAAG GCCTACTCCAAAGAAGGCCTCTCCGCCGCCGCCAAGCTCGACCCCAAGGAGCAGGCCAAGCTGGAAGCCAGCGAA TTTCTCAGCAGCATGGTGGACGAGCTCGAGCAACAGATCGAGGCCCTCGAGGCCGAGGGCGAATCCATACAGGCC ACCATGAAAAAGGGCAAGAACCAAGGCTCCAAGGCCGACCGGATGGCCGAGATTGAGCGGGTGATTGAGCGGCAC AAGTGGCATCAAGGGAAGCTGGAGCTGATTCGCCGCTCCCTCGAAAACGGCGGCATCGAGACGGACCAGGTCAAC GACTTGGAAGACAGCATCCGCTTCTACGTGACCGAAGGCGGGACCGACGAGTACATGGATGACGACGAGCTGTAC AACGACCTGAATCTCGAAGACGACGAGGGCGTCTTTGGTATGAACCAAGACGGCGAAAAGAACTCTTCACTGGAT ACGCAATCCGTCCACGACGAGGTCGCCGAGCCAGAACCGCCAGCCAAGGCCACAGGACGGAGAGCCCAACGAGCA GAGGCCGAAGCCGCGGCGGCGAGTGGAGGAGGAGGTACGGGGAGCAGTAGCGGAAGCGGCCGGAAGACGACGGTG CCGACAAAGTCGCCTTTACCGGCGCTGGCGACGCTGCACACGCCGCTGACGACCATCGGCGGCGGCGCGGCGAGC GGACCGGTCATGAAGCCGGCGGCGGTACCGACGAGGCCGGCCGGCGAGGGCCTCAAGTACGCCTCGGCGGCGGCG GCTGCTGCGGCCAGCGACAGGAACAACGTCGGCATCGCTCCCCTGCCGCCGCCGCCGGGGGCCGTGACGCAGCCC AAGACGAGCGCGACGAGCTCTCCGGCCAGCACGTCGATACAGCCGACGCCGACATCGGCCGAGCCCAAGCCGCCT GCTGGCGAATCCGAGACGGCTCCGGCGGCAGCGCCCACGACGACATCTTCACGGTCCTCGAGACGGGCGAGATCG GCGGGCAAGCAGGCGGCGACGCAAGCAGCAGGCGAATCATCAGACCGTCCCGCTGCGTCTCGCACCGACCCGACA CAGTCACAGGCCAACGGCGCCACCAACGGCATCAAACCCATCGCCGAGGAGCCCGAGGAAGAGTGCATCTATCAC CTCCCCTCGTCGCTCAACGACCTGGTAGACACGTACGACACGTCGCGCAAGCGGCCGGCGCCGTCCTCGGCCTCT ACTTCGACGCTGCGGATGATGACGGCCAGCCAGTCCTCGTGTCCCGACCTGGCCGACGTCGAGGTACCGCGCTCG TACAAGCCCGACGTGCCGGCCATCAACATTAGCTCCGGTTTCCCGCGGGAGCCTCTGCCCATCTTTGACGACCCG CGGCTGTACTCGCGCATAGACCCGGACACGCTGTTTTACGTCTTTTACTACAAACAGGGCACGGCGCAACAGTAC CTGGCGGCCAAGGCGCTCAAGGATCAGAGCTGGCGGTTCCACAAGCAGTACCAGACCTGGTTTCAGCGACACGAG GAGCCCAAGAACATCACCGAGGAGTTTGAGCAGGGGACGTACCGCTTCTTTGACTACGAGAGCACTTGGATGAAT CGTCGGAAAGCCGACTTCAAGTTTGCGTACAAGTTTCTCGAAGACGACATCTGA |
| Transcript | >Ophun1|3350 ATGGCGGCCCGAAAACTGCAACAAGAGGTCGACAAGTGCTTCAAAAAGGTGGCCGAGGGCGTTGCCGAGTTCGAG GCCATCTACGAAAAGATTGAGCAGTCCAACAACCCGGCGCAAAAGGAAAAGCTCGAGGACAACCTCAAACGAGAA ATCAAGAAGCTGCAACGGCTGCGCGACCAGATAAAGACATGGGCGGCCAGCAACGACATCAAGGACAAGGCTCCT CTGCTCGAGCACCGCAAGCTAATAGAAACGCAAATGGAAAAGTTCAAGGCCGTCGAAAAGGCAATGAAGACAAAG GCCTACTCCAAAGAAGGCCTCTCCGCCGCCGCCAAGCTCGACCCCAAGGAGCAGGCCAAGCTGGAAGCCAGCGAA TTTCTCAGCAGCATGGTGGACGAGCTCGAGCAACAGATCGAGGCCCTCGAGGCCGAGGGCGAATCCATACAGGCC ACCATGAAAAAGGGCAAGAACCAAGGCTCCAAGGCCGACCGGATGGCCGAGATTGAGCGGGTGATTGAGCGGCAC AAGTGGCATCAAGGGAAGCTGGAGCTGATTCGCCGCTCCCTCGAAAACGGCGGCATCGAGACGGACCAGGTCAAC GACTTGGAAGACAGCATCCGCTTCTACGTGACCGAAGGCGGGACCGACGAGTACATGGATGACGACGAGCTGTAC AACGACCTGAATCTCGAAGACGACGAGGGCGTCTTTGGTATGAACCAAGACGGCGAAAAGAACTCTTCACTGGAT ACGCAATCCGTCCACGACGAGGTCGCCGAGCCAGAACCGCCAGCCAAGGCCACAGGACGGAGAGCCCAACGAGCA GAGGCCGAAGCCGCGGCGGCGAGTGGAGGAGGAGGTACGGGGAGCAGTAGCGGAAGCGGCCGGAAGACGACGGTG CCGACAAAGTCGCCTTTACCGGCGCTGGCGACGCTGCACACGCCGCTGACGACCATCGGCGGCGGCGCGGCGAGC GGACCGGTCATGAAGCCGGCGGCGGTACCGACGAGGCCGGCCGGCGAGGGCCTCAAGTACGCCTCGGCGGCGGCG GCTGCTGCGGCCAGCGACAGGAACAACGTCGGCATCGCTCCCCTGCCGCCGCCGCCGGGGGCCGTGACGCAGCCC AAGACGAGCGCGACGAGCTCTCCGGCCAGCACGTCGATACAGCCGACGCCGACATCGGCCGAGCCCAAGCCGCCT GCTGGCGAATCCGAGACGGCTCCGGCGGCAGCGCCCACGACGACATCTTCACGGTCCTCGAGACGGGCGAGATCG GCGGGCAAGCAGGCGGCGACGCAAGCAGCAGGCGAATCATCAGACCGTCCCGCTGCGTCTCGCACCGACCCGACA CAGTCACAGGCCAACGGCGCCACCAACGGCATCAAACCCATCGCCGAGGAGCCCGAGGAAGAGTGCATCTATCAC CTCCCCTCGTCGCTCAACGACCTGGTAGACACGTACGACACGTCGCGCAAGCGGCCGGCGCCGTCCTCGGCCTCT ACTTCGACGCTGCGGATGATGACGGCCAGCCAGTCCTCGTGTCCCGACCTGGCCGACGTCGAGGTACCGCGCTCG TACAAGCCCGACGTGCCGGCCATCAACATTAGCTCCGGTTTCCCGCGGGAGCCTCTGCCCATCTTTGACGACCCG CGGCTGTACTCGCGCATAGACCCGGACACGCTGTTTTACGTCTTTTACTACAAACAGGGCACGGCGCAACAGTAC CTGGCGGCCAAGGCGCTCAAGGATCAGAGCTGGCGGTTCCACAAGCAGTACCAGACCTGGTTTCAGCGACACGAG GAGCCCAAGAACATCACCGAGGAGTTTGAGCAGGGGACGTACCGCTTCTTTGACTACGAGAGCACTTGGATGAAT CGTCGGAAAGCCGACTTCAAGTTTGCGTACAAGTTTCTCGAAGACGACATCTGA |
| Gene | >Ophun1|3350 ATGGCGGCCCGAAAACTGCAACAAGAGGTCGACAAGTGCTTCAAAAAGGTGGCCGAGGGCGTTGCCGAGTTCGAG GCCATCTACGAAAAGATTGAGCAGTCCAACAACCCGGCGCAAAAGGAAAAGCTCGAGGACAACCTCAAACGAGAA ATCAAGAAGCTGCAACGGCTGCGCGACCAGATAAAGACATGGGCGGCCAGCAACGACATCAAGGACAAGGCTCCT CTGCTCGAGCACCGCAAGCTAATAGAAACGGTTCGTCTCCCCTCCCTATCCCCGAGCCGCGCTGACGTCGCACAG CAAATGGAAAAGTTCAAGGCCGTCGAAAAGGCAATGAAGACAAAGGCCTACTCCAAAGAAGGCCTCTCCGCCGCC GCCAAGCTCGACCCCAAGGAGCAGGCCAAGCTGGAAGCCAGCGAATTTCTCAGCAGCATGGTGGACGAGCTCGAG CAACAGATCGAGGCCCTCGAGGCCGAGGGCGAATCCATACAGGCCACCATGAAAAAGGGCAAGAACCAAGGCTCC AAGGCCGACCGGATGGCCGAGATTGAGCGGGTGATTGAGCGGCACAAGTGGCATCAAGGGAAGCTGGAGCTGATT CGCCGCTCCCTCGAAAACGGCGGCATCGAGACGGACCAGGTCAACGACTTGGAAGACAGCATCCGCTTCTACGTG ACCGAAGGCGGGACCGACGAGTACATGGATGACGACGAGCTGTACAACGACCTGAATCTCGAAGACGACGAGGGC GTCTTTGGTATGAACCAAGACGGCGAAAAGAACTCTTCACTGGATACGCAATCCGTCCACGACGAGGTCGCCGAG CCAGAACCGCCAGCCAAGGCCACAGGACGGAGAGCCCAACGAGCAGAGGCCGAAGCCGCGGCGGCGAGTGGAGGA GGAGGTACGGGGAGCAGTAGCGGAAGCGGCCGGAAGACGACGGTGCCGACAAAGTCGCCTTTACCGGCGCTGGCG ACGCTGCACACGCCGCTGACGACCATCGGCGGCGGCGCGGCGAGCGGACCGGTCATGAAGCCGGCGGCGGTACCG ACGAGGCCGGCCGGCGAGGGCCTCAAGTACGCCTCGGCGGCGGCGGCTGCTGCGGCCAGCGACAGGAACAACGTC GGCATCGCTCCCCTGCCGCCGCCGCCGGGGGCCGTGACGCAGCCCAAGACGAGCGCGACGAGCTCTCCGGCCAGC ACGTCGATACAGCCGACGCCGACATCGGCCGAGCCCAAGCCGCCTGCTGGCGAATCCGAGACGGCTCCGGCGGCA GCGCCCACGACGACATCTTCACGGTCCTCGAGACGGGCGAGATCGGCGGGCAAGCAGGCGGCGACGCAAGCAGCA GGCGAATCATCAGACCGTCCCGCTGCGTCTCGCACCGACCCGACACAGTCACAGGCCAACGGCGCCACCAACGGC ATCAAACCCATCGCCGAGGAGCCCGAGGAAGAGTGCATCTATCACCTCCCCTCGTCGCTCAACGACCTGGTAGAC ACGTACGACACGTCGCGCAAGCGGCCGGCGCCGTCCTCGGCCTCTACTTCGACGCTGCGGATGATGACGGCCAGC CAGTCCTCGTGTCCCGACCTGGCCGACGTCGAGGTACCGCGCTCGTACAAGCCCGACGTGCCGGCCATCAACATT AGCTCCGGTTTCCCGCGGGAGCCTCTGCCCATCTTTGACGACCCGCGGCTGTACTCGCGCATAGACCCGGACACG CTGTTTTACGTCTTTTACTACAAACAGGGCACGGCGCAACAGTACCTGGCGGCCAAGGCGCTCAAGGATCAGAGC TGGCGGTTCCACAAGCAGTACCAGACCTGGTTTCAGCGACACGAGGAGCCCAAGAACATCACCGAGGAGTTTGAG CAGGGGACGTACCGCTTCTTTGACTACGAGAGCACTTGGTGAGTCCTTCGTTACTCTAACTCTGTATTCCGCTAA CGACACCAGGATGAATCGTCGGAAAGCCGACTTCAAGTTTGCGTACAAGTTTCTCGAAGACGACATCTGA |