Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|3255
Gene name
LocationContig_29:30172..31222
Strand-
Gene length (bp)1050
Transcript length (bp)972
Coding sequence length (bp)972
Protein length (aa) 324

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03798 TRAM_LAG1_CLN8 TLC domain 1.5E-45 74 284

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13752|YF22_SCHPO Uncharacterized TLC domain-containing protein C17A2.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.02c PE=3 SV=1 13 299 2.0E-64
sp|P47153|TDA4_YEAST Topoisomerase I damage affected protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TDA4 PE=1 SV=1 32 297 2.0E-28
sp|Q06107|YP114_YEAST Uncharacterized TLC domain-containing protein YPR114W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR114W PE=1 SV=1 76 303 5.0E-14
sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1 32 215 9.0E-12
sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56c PE=3 SV=1 58 290 1.0E-11
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O13752|YF22_SCHPO Uncharacterized TLC domain-containing protein C17A2.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.02c PE=3 SV=1 13 299 2.0E-64
sp|P47153|TDA4_YEAST Topoisomerase I damage affected protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TDA4 PE=1 SV=1 32 297 2.0E-28
sp|Q06107|YP114_YEAST Uncharacterized TLC domain-containing protein YPR114W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR114W PE=1 SV=1 76 303 5.0E-14
sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1 32 215 9.0E-12
sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56c PE=3 SV=1 58 290 1.0E-11
sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1 43 215 2.0E-10
sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1 33 216 2.0E-09
sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1 43 298 3.0E-09
sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56b PE=3 SV=1 68 297 6.0E-09
sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1 53 298 7.0E-08
sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1 30 215 1.0E-06
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0110165 cellular anatomical entity No
GO:0031224 intrinsic component of membrane No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 36 58 22
2 78 97 19
3 112 134 22
4 141 160 19
5 165 187 22
6 200 217 17
7 258 280 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|3255
MKDPFFIPPIPWLSDLARPLCELLHLPSLPLHIHEVILSAIFYSLIFYPVSPILSSLLAPHHYTTLSRKKRLSWD
AHVVSMIQSILISVLAVWIRIVDDELGGMSWEERIWGYTGASGMIQALATGYFLWDLVVTSRNLDVFGIGTLAHA
LAALLVFSFGFRPFVNYYACVFILWEISTPFLNIHWFLDKTNRTGSRAQLYNGYMLLFTFFSTRLVYGTYSSMIC
FFDVWATIGRRMDTVPRNDTIMVFVDDSAAVPLWLGYVYLASNITLNGLNFYWFVMMIKAVRKRFQPGKTDQPLT
EAEISISSGLAPNVSTNKTRRRA*
Coding >Ophun1|3255
ATGAAAGATCCGTTCTTCATCCCCCCAATCCCATGGCTATCGGATTTGGCGAGGCCGTTATGCGAGCTTCTTCAT
CTACCCTCGCTTCCTCTGCACATCCACGAAGTCATTCTCTCCGCCATCTTCTACTCGCTCATCTTTTATCCCGTC
TCTCCCATCCTCTCCAGTCTTCTGGCGCCCCACCACTACACCACGCTATCGCGCAAGAAGCGCCTTAGCTGGGAT
GCCCATGTCGTGTCAATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAG
CTTGGCGGCATGAGCTGGGAAGAGCGGATATGGGGCTACACCGGCGCCTCCGGCATGATCCAGGCATTGGCCACT
GGCTATTTCCTCTGGGACCTGGTTGTCACAAGCCGCAATCTTGATGTCTTTGGAATCGGAACTTTGGCTCACGCC
TTGGCCGCGTTGCTGGTCTTTTCCTTTGGCTTTAGACCGTTTGTCAATTACTACGCCTGCGTGTTCATTCTCTGG
GAAATCTCGACGCCTTTCTTGAACATTCACTGGTTTCTAGATAAGACGAACAGGACCGGGTCTCGAGCGCAGCTT
TACAACGGTTACATGTTACTCTTCACCTTCTTTTCCACTCGCCTCGTCTACGGGACCTACTCCTCCATGATCTGC
TTCTTCGACGTCTGGGCAACCATCGGCCGCAGGATGGACACTGTTCCGCGCAACGACACAATCATGGTCTTTGTC
GACGACAGCGCCGCTGTTCCCCTTTGGCTGGGTTACGTTTACCTGGCCAGCAACATCACCCTGAACGGCTTGAAC
TTTTATTGGTTTGTCATGATGATCAAGGCTGTTCGAAAGCGCTTCCAGCCCGGCAAGACAGATCAGCCTTTGACC
GAGGCTGAGATCTCTATTTCATCAGGCTTGGCCCCAAATGTCTCGACCAACAAGACACGCCGCAGGGCATGA
Transcript >Ophun1|3255
ATGAAAGATCCGTTCTTCATCCCCCCAATCCCATGGCTATCGGATTTGGCGAGGCCGTTATGCGAGCTTCTTCAT
CTACCCTCGCTTCCTCTGCACATCCACGAAGTCATTCTCTCCGCCATCTTCTACTCGCTCATCTTTTATCCCGTC
TCTCCCATCCTCTCCAGTCTTCTGGCGCCCCACCACTACACCACGCTATCGCGCAAGAAGCGCCTTAGCTGGGAT
GCCCATGTCGTGTCAATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAG
CTTGGCGGCATGAGCTGGGAAGAGCGGATATGGGGCTACACCGGCGCCTCCGGCATGATCCAGGCATTGGCCACT
GGCTATTTCCTCTGGGACCTGGTTGTCACAAGCCGCAATCTTGATGTCTTTGGAATCGGAACTTTGGCTCACGCC
TTGGCCGCGTTGCTGGTCTTTTCCTTTGGCTTTAGACCGTTTGTCAATTACTACGCCTGCGTGTTCATTCTCTGG
GAAATCTCGACGCCTTTCTTGAACATTCACTGGTTTCTAGATAAGACGAACAGGACCGGGTCTCGAGCGCAGCTT
TACAACGGTTACATGTTACTCTTCACCTTCTTTTCCACTCGCCTCGTCTACGGGACCTACTCCTCCATGATCTGC
TTCTTCGACGTCTGGGCAACCATCGGCCGCAGGATGGACACTGTTCCGCGCAACGACACAATCATGGTCTTTGTC
GACGACAGCGCCGCTGTTCCCCTTTGGCTGGGTTACGTTTACCTGGCCAGCAACATCACCCTGAACGGCTTGAAC
TTTTATTGGTTTGTCATGATGATCAAGGCTGTTCGAAAGCGCTTCCAGCCCGGCAAGACAGATCAGCCTTTGACC
GAGGCTGAGATCTCTATTTCATCAGGCTTGGCCCCAAATGTCTCGACCAACAAGACACGCCGCAGGGCATGA
Gene >Ophun1|3255
ATGAAAGATCCGTTCTTCATCCCCCCAATCCCATGGCTATCGGATTTGGCGAGGCCGTTATGCGAGCTTCTTCAT
CTACCCTCGCTTCCTCTGCACATCCACGAAGTCATTCTCTCCGCCATCTTCTACTCGCTCATCTTTTATCCCGTC
TCTCCCATCCTCTCCAGTCTTCTGGCGCCCCACCACTACACCACGCTATCGCGCAAGAAGCGCCTTAGCTGGGAT
GCCCATGTCGTGTCAATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAG
CTTGGCGGCATGAGCTGGGAAGAGCGGATATGGGGCTACACCGGCGCCTCCGGCATGATCCAGGCATTGGCCACT
GGCTATTTCCTCTGGGACCTGGTTGTCACAAGCCGCAATCTTGATGTCTTTGGAATCGGAACTTTGGCTCACGCC
TTGGCCGCGTTGCTGGTCTTTTCCTTTGGCTTTGTAAGAGAACTCCCCTCGAATCTTTTTCTCGGCATTATACCT
GTCAGTCTTGTCAAAGATTCACTGACTTGAACGCAGAGACCGTTTGTCAATTACTACGCCTGCGTGTTCATTCTC
TGGGAAATCTCGACGCCTTTCTTGAACATTCACTGGTTTCTAGATAAGACGAACAGGACCGGGTCTCGAGCGCAG
CTTTACAACGGTTACATGTTACTCTTCACCTTCTTTTCCACTCGCCTCGTCTACGGGACCTACTCCTCCATGATC
TGCTTCTTCGACGTCTGGGCAACCATCGGCCGCAGGATGGACACTGTTCCGCGCAACGACACAATCATGGTCTTT
GTCGACGACAGCGCCGCTGTTCCCCTTTGGCTGGGTTACGTTTACCTGGCCAGCAACATCACCCTGAACGGCTTG
AACTTTTATTGGTTTGTCATGATGATCAAGGCTGTTCGAAAGCGCTTCCAGCCCGGCAAGACAGATCAGCCTTTG
ACCGAGGCTGAGATCTCTATTTCATCAGGCTTGGCCCCAAATGTCTCGACCAACAAGACACGCCGCAGGGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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