Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophun1\|3195
Gene name
Location	Contig_284:10544..11698
Strand	+
Gene length (bp)	1154
Transcript length (bp)	1026
Coding sequence length (bp)	1026
Protein length (aa)	342

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF11788	MRP-L46	39S mitochondrial ribosomal protein L46	3.0E-26	67	203

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P36528\|RM17_YEAST	54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL17 PE=1 SV=2	72	340	1.0E-23
sp\|O94398\|RM17_SCHPO	54S ribosomal protein L17, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl17 PE=3 SV=1	53	341	3.0E-18
sp\|Q5RK00\|RM46_RAT	39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1	59	340	5.0E-15
sp\|Q3SZ22\|RM46_BOVIN	39S ribosomal protein L46, mitochondrial OS=Bos taurus GN=MRPL46 PE=2 SV=1	59	340	1.0E-13
sp\|Q9EQI8\|RM46_MOUSE	39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=1 SV=1	73	340	2.0E-12

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P36528\|RM17_YEAST	54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL17 PE=1 SV=2	72	340	1.0E-23
sp\|O94398\|RM17_SCHPO	54S ribosomal protein L17, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl17 PE=3 SV=1	53	341	3.0E-18
sp\|Q5RK00\|RM46_RAT	39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1	59	340	5.0E-15
sp\|Q3SZ22\|RM46_BOVIN	39S ribosomal protein L46, mitochondrial OS=Bos taurus GN=MRPL46 PE=2 SV=1	59	340	1.0E-13
sp\|Q9EQI8\|RM46_MOUSE	39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=1 SV=1	73	340	2.0E-12
sp\|Q9H2W6\|RM46_HUMAN	39S ribosomal protein L46, mitochondrial OS=Homo sapiens GN=MRPL46 PE=1 SV=1	59	340	3.0E-12
sp\|Q5RBU2\|RM46_PONAB	39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1	59	340	3.0E-11

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 40	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophun1\|3195 MSASSRGGRVLGGALSASARKQVCFRCAAAASIRPFSSAAAVESTVMTSQTISTMQKLSPASESLPYDLYSGVIL TRAPLLTRKLHPFENAFFFYQKRLEERLCSKFIPRIYYKKDTVRLLDWEVKIKERKGHVAKELGEYQGQNSMAWD DELRVGDRLSEPESMVECLLKDAESRVSDDAEVLAPEDVVPVPRPASRETEADRVGDVTRLDRKLDRTLYLVVKG NEGWGFPAGVMGNEENLHEAARRVLDTAAGVDMNTWIIGRVPVAHIVAPPVVDANGSILQRTRKTFFLKARIIAG QANLSDNPFGFTQFKWLVREEVEEVLAPEYFQKVRNMMPDR*
Coding	>Ophun1\|3195 ATGTCGGCCAGCAGCAGAGGCGGTCGCGTCCTGGGCGGCGCATTGAGCGCTTCGGCGCGGAAGCAGGTTTGCTTT CGATGCGCTGCCGCCGCCTCCATCCGGCCTTTTTCGTCTGCCGCGGCGGTTGAGTCGACGGTCATGACCTCCCAG ACGATCTCTACGATGCAGAAGCTATCTCCTGCTTCGGAATCGCTGCCGTACGACCTCTACTCGGGCGTGATCCTG ACGCGGGCACCTCTCCTAACGCGAAAGCTGCACCCCTTCGAAAACGCCTTCTTCTTCTACCAAAAGCGGCTCGAA GAACGACTGTGCTCCAAGTTCATCCCGCGGATCTACTACAAGAAGGACACGGTGCGTCTGCTGGACTGGGAAGTC AAGATCAAGGAGCGGAAGGGGCACGTCGCCAAGGAGCTGGGGGAGTACCAGGGGCAGAATTCCATGGCGTGGGAC GACGAGCTGCGTGTTGGCGATAGGCTGAGCGAGCCGGAGAGTATGGTGGAGTGCTTGCTCAAGGATGCGGAGTCG AGGGTTTCGGACGATGCTGAGGTTTTGGCGCCTGAGGATGTCGTTCCGGTGCCTAGGCCGGCTTCCAGGGAGACG GAGGCGGATAGGGTGGGGGATGTTACCAGGTTGGATAGGAAGCTTGATCGGACGCTCTATCTTGTTGTCAAGGGG AACGAGGGATGGGGGTTTCCGGCTGGTGTCATGGGCAATGAGGAGAACCTCCACGAAGCAGCGCGACGCGTCCTC GACACAGCAGCAGGCGTCGACATGAACACCTGGATAATAGGCCGCGTCCCCGTCGCCCACATCGTCGCCCCGCCC GTCGTCGACGCCAACGGCAGCATCCTCCAGCGCACGCGCAAGACCTTCTTCCTCAAGGCTCGCATCATCGCCGGC CAGGCTAACCTCTCTGATAACCCCTTTGGCTTCACGCAGTTCAAGTGGCTCGTTAGGGAGGAGGTGGAGGAGGTG CTGGCGCCGGAGTACTTTCAGAAAGTGCGCAATATGATGCCTGATCGGTGA
Transcript	>Ophun1\|3195 ATGTCGGCCAGCAGCAGAGGCGGTCGCGTCCTGGGCGGCGCATTGAGCGCTTCGGCGCGGAAGCAGGTTTGCTTT CGATGCGCTGCCGCCGCCTCCATCCGGCCTTTTTCGTCTGCCGCGGCGGTTGAGTCGACGGTCATGACCTCCCAG ACGATCTCTACGATGCAGAAGCTATCTCCTGCTTCGGAATCGCTGCCGTACGACCTCTACTCGGGCGTGATCCTG ACGCGGGCACCTCTCCTAACGCGAAAGCTGCACCCCTTCGAAAACGCCTTCTTCTTCTACCAAAAGCGGCTCGAA GAACGACTGTGCTCCAAGTTCATCCCGCGGATCTACTACAAGAAGGACACGGTGCGTCTGCTGGACTGGGAAGTC AAGATCAAGGAGCGGAAGGGGCACGTCGCCAAGGAGCTGGGGGAGTACCAGGGGCAGAATTCCATGGCGTGGGAC GACGAGCTGCGTGTTGGCGATAGGCTGAGCGAGCCGGAGAGTATGGTGGAGTGCTTGCTCAAGGATGCGGAGTCG AGGGTTTCGGACGATGCTGAGGTTTTGGCGCCTGAGGATGTCGTTCCGGTGCCTAGGCCGGCTTCCAGGGAGACG GAGGCGGATAGGGTGGGGGATGTTACCAGGTTGGATAGGAAGCTTGATCGGACGCTCTATCTTGTTGTCAAGGGG AACGAGGGATGGGGGTTTCCGGCTGGTGTCATGGGCAATGAGGAGAACCTCCACGAAGCAGCGCGACGCGTCCTC GACACAGCAGCAGGCGTCGACATGAACACCTGGATAATAGGCCGCGTCCCCGTCGCCCACATCGTCGCCCCGCCC GTCGTCGACGCCAACGGCAGCATCCTCCAGCGCACGCGCAAGACCTTCTTCCTCAAGGCTCGCATCATCGCCGGC CAGGCTAACCTCTCTGATAACCCCTTTGGCTTCACGCAGTTCAAGTGGCTCGTTAGGGAGGAGGTGGAGGAGGTG CTGGCGCCGGAGTACTTTCAGAAAGTGCGCAATATGATGCCTGATCGGTGA
Gene	>Ophun1\|3195 ATGTCGGCCAGCAGCAGAGGCGGTCGCGTCCTGGGCGGCGCATTGAGCGGTATGAGAGCCCTTCTGAAGATGGAG ATGAAGCTCTAGAGCTGGATGAACTGATTTGACTGATTCTGGGGAGCAGCTTCGGCGCGGAAGCAGGTTTGCTTT CGATGCGCTGCCGCCGCCTCCATCCGGCCTTTTTCGTCTGCCGCGGCGGTTGAGTCGACGGTCATGACCTCCCAG ACGATCTCTACGATGCAGAAGCTATCTCCTGCTTCGGAATCGCTGCCGTACGACCTCTACTCGGGCGTGATCCTG ACGCGGGCACCTCTCCTAACGCGAAAGCTGCACCCCTTCGAAAACGCCTTCTTCTTCTACCAAAAGCGGCTCGAA GAACGACTGTGCTCCAAGTTCATCCCGCGGATCTACTACAAGAAGGACACGGTGCGTCTGCTGGACTGGGAAGTC AAGATCAAGGAGCGGAAGGGGCACGTCGCCAAGGAGCTGGGGGAGTACCAGGGGCAGAATTCCATGGCGTGGGAC GACGAGCTGCGTGTTGGCGATAGGCTGAGCGAGCCGGAGAGTATGGTGGAGTGCTTGCTCAAGGATGCGGAGTCG AGGGTTTCGGACGATGCTGAGGTTTTGGCGCCTGAGGATGTCGTTCCGGTGCCTAGGCCGGCTTCCAGGGAGACG GAGGCGGATAGGGTGGGGGATGTTACCAGGTTGGATAGGAAGCTTGATCGGACGCTCTATCTTGTTGTCAAGGGG AACGAGGGATGGGGGTTTCCGGCTGGTGTCATGGGCAATGAGGAGAACCTCCACGAAGTTCGTTCCCCACCCCCC CCTAAACAAGTCCACGATACTAACACACAACTCAGGCAGCGCGACGCGTCCTCGACACAGCAGCAGGCGTCGACA TGAACACCTGGATAATAGGCCGCGTCCCCGTCGCCCACATCGTCGCCCCGCCCGTCGTCGACGCCAACGGCAGCA TCCTCCAGCGCACGCGCAAGACCTTCTTCCTCAAGGCTCGCATCATCGCCGGCCAGGCTAACCTCTCTGATAACC CCTTTGGCTTCACGCAGTTCAAGTGGCTCGTTAGGGAGGAGGTGGAGGAGGTGCTGGCGCCGGAGTACTTTCAGA AAGTGCGCAATATGATGCCTGATCGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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