© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3134 |
| Gene name | |
| Location | Contig_28:19504..20290 |
| Strand | + |
| Gene length (bp) | 786 |
| Transcript length (bp) | 546 |
| Coding sequence length (bp) | 546 |
| Protein length (aa) | 182 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04051 | TRAPP | Transport protein particle (TRAPP) component | 1.4E-42 | 19 | 176 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q86SZ2|TPC6B_HUMAN | Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1 | 59 | 174 | 2.0E-39 |
| sp|Q32L78|TPC6B_BOVIN | Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1 | 59 | 174 | 2.0E-39 |
| sp|Q9D289|TPC6B_MOUSE | Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1 | 59 | 174 | 2.0E-38 |
| sp|Q09784|YA95_SCHPO | Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13G6.05c PE=1 SV=3 | 14 | 178 | 1.0E-30 |
| sp|Q3T086|TPC6A_BOVIN | Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1 | 58 | 174 | 2.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q86SZ2|TPC6B_HUMAN | Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1 | 59 | 174 | 2.0E-39 |
| sp|Q32L78|TPC6B_BOVIN | Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1 | 59 | 174 | 2.0E-39 |
| sp|Q9D289|TPC6B_MOUSE | Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1 | 59 | 174 | 2.0E-38 |
| sp|Q09784|YA95_SCHPO | Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13G6.05c PE=1 SV=3 | 14 | 178 | 1.0E-30 |
| sp|Q3T086|TPC6A_BOVIN | Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1 | 58 | 174 | 2.0E-29 |
| sp|O75865|TPC6A_HUMAN | Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2 | 60 | 174 | 2.0E-28 |
| sp|Q78XR0|TPC6A_MOUSE | Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1 SV=1 | 60 | 174 | 8.0E-28 |
| sp|Q99394|TRS33_YEAST | Trafficking protein particle complex subunit 33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS33 PE=1 SV=1 | 45 | 168 | 1.0E-22 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3134 MPPYNASDPTATFLSASALDFLLIEMVPLAQRVAASTLRPSTTTADEDEDVVVDAVHLRLELLGYRVGVGLVERP RFNDALDIIKFLCKDLWSLLFGKNIDNLKTNHRGVYVLTDNMFRPFSRMSTEAGGQAVARAQPFLWFPCGIVRGA LAALGMETIVQAEINDLPGAVFQIKTIPAKA* |
| Coding | >Ophun1|3134 ATGCCCCCCTACAACGCCTCCGACCCAACCGCAACCTTCCTCTCAGCCTCAGCCCTCGACTTCCTCCTCATCGAG ATGGTTCCCCTCGCCCAACGCGTCGCCGCCTCCACCCTGCGCCCCTCCACCACCACCGCGGACGAGGACGAGGAT GTCGTCGTCGACGCCGTGCATCTCCGTCTTGAGCTCTTGGGGTATAGAGTTGGCGTTGGGCTTGTTGAGCGACCC CGGTTCAACGACGCGCTCGACATCATTAAATTCCTCTGCAAGGATCTATGGTCCCTCCTCTTCGGCAAGAATATC GATAACCTCAAGACCAACCATCGCGGCGTCTACGTCCTAACAGACAACATGTTCCGCCCCTTCTCCAGAATGAGT ACCGAAGCAGGCGGACAGGCCGTCGCTCGAGCTCAGCCTTTCCTCTGGTTTCCCTGTGGCATCGTTCGAGGCGCC CTGGCGGCATTGGGCATGGAGACCATCGTCCAAGCAGAGATCAACGATCTGCCAGGCGCCGTCTTTCAAATAAAG ACGATTCCCGCCAAGGCCTGA |
| Transcript | >Ophun1|3134 ATGCCCCCCTACAACGCCTCCGACCCAACCGCAACCTTCCTCTCAGCCTCAGCCCTCGACTTCCTCCTCATCGAG ATGGTTCCCCTCGCCCAACGCGTCGCCGCCTCCACCCTGCGCCCCTCCACCACCACCGCGGACGAGGACGAGGAT GTCGTCGTCGACGCCGTGCATCTCCGTCTTGAGCTCTTGGGGTATAGAGTTGGCGTTGGGCTTGTTGAGCGACCC CGGTTCAACGACGCGCTCGACATCATTAAATTCCTCTGCAAGGATCTATGGTCCCTCCTCTTCGGCAAGAATATC GATAACCTCAAGACCAACCATCGCGGCGTCTACGTCCTAACAGACAACATGTTCCGCCCCTTCTCCAGAATGAGT ACCGAAGCAGGCGGACAGGCCGTCGCTCGAGCTCAGCCTTTCCTCTGGTTTCCCTGTGGCATCGTTCGAGGCGCC CTGGCGGCATTGGGCATGGAGACCATCGTCCAAGCAGAGATCAACGATCTGCCAGGCGCCGTCTTTCAAATAAAG ACGATTCCCGCCAAGGCCTGA |
| Gene | >Ophun1|3134 ATGCCCCCCTACAACGCCTCCGACCCAACCGCAACCTTCCTCTCAGCCTCAGCCCTCGACTTCCTCCTCATCGAG ATGGTTCCCCTCGCCCAACGCGTCGCCGCCTCCACCCTGCGCCCCTCCACCACCACCGCGGACGAGGACGAGGAT GTCGTCGTCGACGCCGTGCATCTCCGTCTTGAGCTCTTGGGGTATAGAGTTGGCGTTGGGCTTGTTGAGCGGTTC GTTGTTTTTTTTTTTTTGTTGTTTCTTTCCTGCCTTGCCCTTTGGCGCGTGAGAGGGGGGGGTTGGGGGGCTAAG GGGGTGTAGATTCTCGAGGGATAGACCCCGGTTCAACGACGCGCTCGACATCATTAAATTCCTCTGCAAGGATCT ATGGTCCCTCCTCTTCGGCAAGAATATCGATAACCTCAAGACCAACCATCGCGTACCTCTCCCCTCTCTCTTCCC CTTCCCCTTCCCATTCCCATTCCTCGCTTACAAACTTGACAGGGCGTCTACGTCCTAACAGACAACATGTTCCGC CCCTTCTCCAGAATGAGTACCGAAGCAGGCGGACAGGCCGTCGCTCGAGCTCAGCCTGTACGTTCATCTCCTGTC CGATACTTCCGTCTTCGTCTGTGCAAGTCGAATCCTCACGCCTGCTTTTCTCAGTTCCTCTGGTTTCCCTGTGGC ATCGTTCGAGGCGCCCTGGCGGCATTGGGCATGGAGACCATCGTCCAAGCAGAGATCAACGATCTGCCAGGCGCC GTCTTTCAAATAAAGACGATTCCCGCCAAGGCCTGA |