© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3060 |
| Gene name | |
| Location | Contig_271:12714..13436 |
| Strand | + |
| Gene length (bp) | 722 |
| Transcript length (bp) | 651 |
| Coding sequence length (bp) | 651 |
| Protein length (aa) | 217 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08229 | SHR3_chaperone | ER membrane protein SH3 | 3.4E-72 | 19 | 215 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q02774|SHR3_YEAST | Secretory component protein SHR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHR3 PE=1 SV=2 | 15 | 190 | 1.0E-19 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 75 | 97 | 22 |
| 3 | 104 | 126 | 22 |
| 4 | 164 | 182 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3060 MAPYVDYSKTTRSKSYRGSGSFATFLIIGPTCFFLGILFASFPYDFPLLWTKEPAGDDYYNQLEAHLKFLHRSPP LIGRMLNIVVSVGFLGLFAKLFRPSEANFLFDGASLILYTIGVAVYVSNIVKGLRTLSSGLWDSDEFRNSREGRF EGEYILGREDSLKVLAASNTILALVLIGILVLQAGQWYAEKRESDDEDSVQQAPGGKAVATTKKKQ* |
| Coding | >Ophun1|3060 ATGGCGCCTTACGTCGATTACTCCAAGACGACCAGGTCAAAGAGCTACCGAGGCTCAGGCTCCTTTGCGACCTTT CTAATCATTGGACCGACCTGCTTCTTCCTCGGCATCCTCTTCGCCTCTTTTCCCTACGATTTCCCGCTGTTGTGG ACCAAAGAGCCCGCAGGCGATGACTACTATAACCAGCTCGAGGCGCATCTCAAGTTCCTACACCGGTCGCCGCCG CTCATCGGCCGCATGCTCAACATCGTCGTCAGCGTCGGCTTCCTCGGTCTCTTCGCCAAGCTCTTCCGCCCCAGC GAGGCCAATTTTCTCTTCGACGGCGCGTCCCTGATTCTCTACACCATCGGCGTGGCCGTCTACGTTTCCAACATC GTCAAGGGTCTACGCACTCTCAGCTCGGGCCTCTGGGACAGCGACGAGTTCCGCAACAGTCGCGAGGGCCGCTTT GAGGGAGAGTACATCCTGGGACGCGAGGATAGTCTCAAGGTGCTGGCTGCGAGCAACACCATCCTGGCACTCGTC CTCATCGGCATCCTCGTTCTTCAGGCTGGACAGTGGTACGCCGAGAAGAGGGAATCGGATGACGAGGATAGCGTG CAGCAGGCTCCGGGCGGAAAAGCCGTGGCTACGACCAAGAAGAAGCAGTGA |
| Transcript | >Ophun1|3060 ATGGCGCCTTACGTCGATTACTCCAAGACGACCAGGTCAAAGAGCTACCGAGGCTCAGGCTCCTTTGCGACCTTT CTAATCATTGGACCGACCTGCTTCTTCCTCGGCATCCTCTTCGCCTCTTTTCCCTACGATTTCCCGCTGTTGTGG ACCAAAGAGCCCGCAGGCGATGACTACTATAACCAGCTCGAGGCGCATCTCAAGTTCCTACACCGGTCGCCGCCG CTCATCGGCCGCATGCTCAACATCGTCGTCAGCGTCGGCTTCCTCGGTCTCTTCGCCAAGCTCTTCCGCCCCAGC GAGGCCAATTTTCTCTTCGACGGCGCGTCCCTGATTCTCTACACCATCGGCGTGGCCGTCTACGTTTCCAACATC GTCAAGGGTCTACGCACTCTCAGCTCGGGCCTCTGGGACAGCGACGAGTTCCGCAACAGTCGCGAGGGCCGCTTT GAGGGAGAGTACATCCTGGGACGCGAGGATAGTCTCAAGGTGCTGGCTGCGAGCAACACCATCCTGGCACTCGTC CTCATCGGCATCCTCGTTCTTCAGGCTGGACAGTGGTACGCCGAGAAGAGGGAATCGGATGACGAGGATAGCGTG CAGCAGGCTCCGGGCGGAAAAGCCGTGGCTACGACCAAGAAGAAGCAGTGA |
| Gene | >Ophun1|3060 ATGGCGCCTTACGTCGATTACTCCAAGACGACCAGGTCAAAGAGCTACCGAGGCTCAGGCTCCTTTGCGACCTTT CTAATCATTGGACGTGCGTTAACCCACCCCCCTTTCCCTTTCCCCGCTGCATAATCGAGTCTCGAGGCCGACGAT GATTCTTAGCGACCTGCTTCTTCCTCGGCATCCTCTTCGCCTCTTTTCCCTACGATTTCCCGCTGTTGTGGACCA AAGAGCCCGCAGGCGATGACTACTATAACCAGCTCGAGGCGCATCTCAAGTTCCTACACCGGTCGCCGCCGCTCA TCGGCCGCATGCTCAACATCGTCGTCAGCGTCGGCTTCCTCGGTCTCTTCGCCAAGCTCTTCCGCCCCAGCGAGG CCAATTTTCTCTTCGACGGCGCGTCCCTGATTCTCTACACCATCGGCGTGGCCGTCTACGTTTCCAACATCGTCA AGGGTCTACGCACTCTCAGCTCGGGCCTCTGGGACAGCGACGAGTTCCGCAACAGTCGCGAGGGCCGCTTTGAGG GAGAGTACATCCTGGGACGCGAGGATAGTCTCAAGGTGCTGGCTGCGAGCAACACCATCCTGGCACTCGTCCTCA TCGGCATCCTCGTTCTTCAGGCTGGACAGTGGTACGCCGAGAAGAGGGAATCGGATGACGAGGATAGCGTGCAGC AGGCTCCGGGCGGAAAAGCCGTGGCTACGACCAAGAAGAAGCAGTGA |