© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|3004 |
| Gene name | |
| Location | Contig_267:14188..15070 |
| Strand | + |
| Gene length (bp) | 882 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07962 | Swi3 | Replication Fork Protection Component Swi3 | 2.1E-25 | 66 | 147 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A4RCW0|CSM3_MAGO7 | Chromosome segregation in meiosis protein 3 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CSM3 PE=3 SV=1 | 1 | 270 | 3.0E-50 |
| sp|Q7SHE8|CSM3_NEUCR | Chromosome segregation in meiosis protein 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csm-3 PE=3 SV=1 | 20 | 292 | 2.0E-44 |
| sp|Q2H3R6|CSM3_CHAGB | Chromosome segregation in meiosis protein 3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CSM3 PE=3 SV=1 | 24 | 221 | 4.0E-40 |
| sp|Q0CU66|CSM3_ASPTN | Chromosome segregation in meiosis protein 3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=csm3 PE=3 SV=2 | 14 | 207 | 1.0E-35 |
| sp|A1D9E6|CSM3_NEOFI | Chromosome segregation in meiosis protein 3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=csm3 PE=3 SV=1 | 30 | 272 | 1.0E-33 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A4RCW0|CSM3_MAGO7 | Chromosome segregation in meiosis protein 3 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CSM3 PE=3 SV=1 | 1 | 270 | 3.0E-50 |
| sp|Q7SHE8|CSM3_NEUCR | Chromosome segregation in meiosis protein 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csm-3 PE=3 SV=1 | 20 | 292 | 2.0E-44 |
| sp|Q2H3R6|CSM3_CHAGB | Chromosome segregation in meiosis protein 3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CSM3 PE=3 SV=1 | 24 | 221 | 4.0E-40 |
| sp|Q0CU66|CSM3_ASPTN | Chromosome segregation in meiosis protein 3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=csm3 PE=3 SV=2 | 14 | 207 | 1.0E-35 |
| sp|A1D9E6|CSM3_NEOFI | Chromosome segregation in meiosis protein 3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=csm3 PE=3 SV=1 | 30 | 272 | 1.0E-33 |
| sp|Q0UJ25|CSM3_PHANO | Chromosome segregation in meiosis protein 3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=CSM3 PE=3 SV=1 | 48 | 161 | 4.0E-32 |
| sp|Q1DME8|CSM3_COCIM | Chromosome segregation in meiosis protein 3 OS=Coccidioides immitis (strain RS) GN=CSM3 PE=3 SV=2 | 48 | 270 | 6.0E-32 |
| sp|A4DA84|CSM3_ASPFU | Chromosome segregation in meiosis protein 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=csm3 PE=3 SV=1 | 6 | 272 | 7.0E-32 |
| sp|A1C8Y9|CSM3_ASPCL | Chromosome segregation in meiosis protein 3 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=csm3 PE=3 SV=1 | 24 | 272 | 5.0E-30 |
| sp|O14350|SWI3_SCHPO | Swi1-interacting protein swi3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swi3 PE=1 SV=2 | 48 | 146 | 5.0E-17 |
| sp|Q6C656|CSM3_YARLI | Chromosome segregation in meiosis protein 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CSM3 PE=3 SV=1 | 48 | 213 | 5.0E-16 |
| sp|Q3ZCC4|TIPIN_BOVIN | TIMELESS-interacting protein OS=Bos taurus GN=TIPIN PE=2 SV=1 | 66 | 174 | 2.0E-08 |
| sp|Q6CIH2|CSM3_KLULA | Chromosome segregation in meiosis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CSM3 PE=3 SV=1 | 56 | 144 | 2.0E-08 |
| sp|Q6FU57|CSM3_CANGA | Chromosome segregation in meiosis protein 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CSM3 PE=3 SV=1 | 47 | 142 | 4.0E-08 |
| sp|Q91WA1|TIPIN_MOUSE | TIMELESS-interacting protein OS=Mus musculus GN=Tipin PE=1 SV=2 | 66 | 174 | 5.0E-08 |
| sp|Q5F416|TIPIN_CHICK | TIMELESS-interacting protein OS=Gallus gallus GN=TIPIN PE=2 SV=1 | 66 | 134 | 9.0E-08 |
| sp|Q4QR88|TIPIN_RAT | TIMELESS-interacting protein OS=Rattus norvegicus GN=Tipin PE=2 SV=1 | 66 | 174 | 1.0E-07 |
| sp|Q6DBR4|TIPIN_DANRE | TIMELESS-interacting protein OS=Danio rerio GN=tipin PE=2 SV=1 | 53 | 134 | 1.0E-07 |
| sp|Q75DC6|CSM3_ASHGO | Chromosome segregation in meiosis protein 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CSM3 PE=3 SV=1 | 55 | 146 | 3.0E-07 |
| sp|Q9BVW5|TIPIN_HUMAN | TIMELESS-interacting protein OS=Homo sapiens GN=TIPIN PE=1 SV=2 | 66 | 134 | 3.0E-07 |
| sp|Q8INX3|TIPIN_DROME | Protein TIPIN homolog OS=Drosophila melanogaster GN=CG10336 PE=2 SV=2 | 54 | 136 | 4.0E-07 |
| sp|Q0IHI4|TIPIN_XENLA | TIMELESS-interacting protein OS=Xenopus laevis GN=tipin PE=1 SV=1 | 57 | 134 | 7.0E-07 |
| sp|Q04659|CSM3_YEAST | Chromosome segregation in meiosis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSM3 PE=1 SV=1 | 55 | 131 | 9.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006974 | cellular response to DNA damage stimulus | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0048478 | replication fork protection | Yes |
| GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:2000104 | negative regulation of DNA-templated DNA replication | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0051053 | negative regulation of DNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0006275 | regulation of DNA replication | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0044238 | primary metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009892 | negative regulation of metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0090329 | regulation of DNA-templated DNA replication | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0006950 | response to stress | No |
| GO:0045005 | DNA-templated DNA replication maintenance of fidelity | No |
| GO:0008156 | negative regulation of DNA replication | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0051172 | negative regulation of nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0048519 | negative regulation of biological process | No |
| GO:0051052 | regulation of DNA metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0010605 | negative regulation of macromolecule metabolic process | No |
| GO:0031324 | negative regulation of cellular metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0048523 | negative regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|3004 MSSSNPSRARVAGLDDYDVDDSDPFRSPSPQPAASPTSQKRKAGVSTLGLDEEVSVKKRARAPAFKLDENLLLSP AGIPRMRERARKMRLRGRGYEFEDADRMLNMFQFWLDDLYPKARFKDALAMVEKAGHKKLLLQARMEWINEGKPG ARKKDDEDDEVDNDDQDDNKNGNDNMDNHDDVNQRSTDQDPPQPAPNRPKTPERNDVPNPDDLDDIYDATPRAPT RTINALSQSVDVAVQGEGQANGHQQPANNAEPDEEDLDALIAEAEGLDRKGHDSVDEDAMAEAAALNM* |
| Coding | >Ophun1|3004 ATGTCCAGCTCCAATCCCTCACGCGCTCGCGTCGCCGGTCTTGACGACTATGATGTCGACGACTCCGATCCCTTC CGCTCTCCCTCTCCCCAACCAGCCGCCTCGCCCACAAGCCAGAAGCGCAAAGCCGGCGTCAGCACCCTCGGCCTC GACGAGGAAGTCTCTGTGAAGAAGCGTGCGCGAGCTCCCGCCTTTAAGCTTGATGAGAATCTCCTTCTCAGCCCG GCTGGCATCCCGCGCATGCGCGAACGGGCCCGCAAGATGCGCCTCCGGGGTAGGGGATACGAGTTTGAGGATGCA GACCGGATGCTCAACATGTTTCAGTTCTGGCTGGATGATTTGTATCCCAAGGCTAGGTTTAAGGATGCGTTGGCT ATGGTTGAGAAGGCGGGACATAAGAAGCTTTTGCTTCAGGCGAGGATGGAATGGATCAACGAAGGGAAACCGGGG GCGCGGAAGAAGGACGACGAGGATGACGAGGTGGATAACGATGACCAAGATGACAACAAGAACGGTAACGACAAC ATGGACAACCACGATGATGTCAACCAACGCTCAACAGACCAAGATCCGCCCCAGCCCGCCCCCAACCGTCCCAAG ACGCCGGAGCGCAACGACGTCCCCAACCCCGACGACCTCGATGACATCTACGACGCAACCCCACGCGCACCCACT CGCACCATCAACGCCCTCTCCCAGTCCGTCGACGTCGCCGTTCAGGGCGAAGGGCAGGCCAACGGTCACCAACAA CCCGCAAATAACGCCGAGCCGGACGAAGAGGATCTGGATGCCCTGATCGCCGAAGCGGAGGGGCTGGACCGGAAA GGTCATGACTCTGTGGATGAGGACGCCATGGCTGAGGCGGCGGCGTTGAATATGTGA |
| Transcript | >Ophun1|3004 ATGTCCAGCTCCAATCCCTCACGCGCTCGCGTCGCCGGTCTTGACGACTATGATGTCGACGACTCCGATCCCTTC CGCTCTCCCTCTCCCCAACCAGCCGCCTCGCCCACAAGCCAGAAGCGCAAAGCCGGCGTCAGCACCCTCGGCCTC GACGAGGAAGTCTCTGTGAAGAAGCGTGCGCGAGCTCCCGCCTTTAAGCTTGATGAGAATCTCCTTCTCAGCCCG GCTGGCATCCCGCGCATGCGCGAACGGGCCCGCAAGATGCGCCTCCGGGGTAGGGGATACGAGTTTGAGGATGCA GACCGGATGCTCAACATGTTTCAGTTCTGGCTGGATGATTTGTATCCCAAGGCTAGGTTTAAGGATGCGTTGGCT ATGGTTGAGAAGGCGGGACATAAGAAGCTTTTGCTTCAGGCGAGGATGGAATGGATCAACGAAGGGAAACCGGGG GCGCGGAAGAAGGACGACGAGGATGACGAGGTGGATAACGATGACCAAGATGACAACAAGAACGGTAACGACAAC ATGGACAACCACGATGATGTCAACCAACGCTCAACAGACCAAGATCCGCCCCAGCCCGCCCCCAACCGTCCCAAG ACGCCGGAGCGCAACGACGTCCCCAACCCCGACGACCTCGATGACATCTACGACGCAACCCCACGCGCACCCACT CGCACCATCAACGCCCTCTCCCAGTCCGTCGACGTCGCCGTTCAGGGCGAAGGGCAGGCCAACGGTCACCAACAA CCCGCAAATAACGCCGAGCCGGACGAAGAGGATCTGGATGCCCTGATCGCCGAAGCGGAGGGGCTGGACCGGAAA GGTCATGACTCTGTGGATGAGGACGCCATGGCTGAGGCGGCGGCGTTGAATATGTGA |
| Gene | >Ophun1|3004 ATGTCCAGCTCCAATCCCTCACGCGCTCGCGTCGCCGGTCTTGACGACTATGATGTCGACGACTCCGATCCCTTC CGCTCTCCCTCTCCCCAACCAGCCGCCTCGCCCACAAGCCAGAAGCGCAAAGCCGGCGTCAGCACCCTCGGCCTC GACGAGGAAGTCTCTGTGAAGAAGCGTGCGCGAGCTCCCGCCTTTAAGCTTGATGAGAATCTCCTTCTCAGCCCG GCTGGCATCCCGCGCATGCGCGAACGGGCCCGCAAGATGCGCCTCCGGGGTAGGGGATACGAGTTTGAGGATGCA GACCGGATGCTCAACATGTTTCAGTTCTGGCTGGATGATTTGTATCCCAAGGCTAGGTTTAAGGATGCGTTGGCT ATGGTTGAGAAGGCGGGACATAAGAAGCTTTTGCTTCAGGCGAGGATGGAATGGATCAACGAAGGGAAACCGGGG GCGCGGAAGAAGGACGACGAGGATGACGAGGTGGATAACGATGACCAAGATGACAACAAGAACGGTAACGACAAC ATGGACAACCACGATGATGTCAACCAACGCTCAACAGACCAAGATCCGCCCCAGCCCGCCCCCAACCGTCCCAAG ACGCCGGAGCGCAACGACGTCCCCAACCCCGACGACCTCGATGACATCTACGACGCAACCCCACGCGCACCCACT CGCACCATCAACGCCCTCTCCCAGTCCGTCGACGTCGCCGTTCAGGGCGAAGGGCAGGCCAACGGTCACCAACAA CCCGCAAATAACGCCGAGCCGGACGAAGAGGATCTGGATGCCCTGATCGCCGAAGCGGAGGGGCTGGACCGGAAA GGTCATGACTCTGTGGATGAGGACGCCATGGCTGAGGCGGCGGCGTTGAATATGTGA |