© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|2977 |
| Gene name | |
| Location | Contig_265:2905..3549 |
| Strand | - |
| Gene length (bp) | 644 |
| Transcript length (bp) | 456 |
| Coding sequence length (bp) | 456 |
| Protein length (aa) | 152 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01090 | Ribosomal_S19e | Ribosomal protein S19e | 4.7E-57 | 6 | 142 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P27073|RS19_EMENI | 40S ribosomal protein S19 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rps19 PE=3 SV=1 | 3 | 140 | 9.0E-86 |
| sp|P58234|RS19A_SCHPO | 40S ribosomal protein S19-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1901 PE=2 SV=1 | 4 | 146 | 3.0E-63 |
| sp|P07281|RS19B_YEAST | 40S ribosomal protein S19-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS19B PE=1 SV=2 | 4 | 145 | 1.0E-62 |
| sp|P07280|RS19A_YEAST | 40S ribosomal protein S19-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS19A PE=1 SV=2 | 4 | 145 | 2.0E-62 |
| sp|P79016|RS19B_SCHPO | 40S ribosomal protein S19-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1902 PE=3 SV=2 | 4 | 145 | 3.0E-62 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P27073|RS19_EMENI | 40S ribosomal protein S19 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rps19 PE=3 SV=1 | 3 | 140 | 9.0E-86 |
| sp|P58234|RS19A_SCHPO | 40S ribosomal protein S19-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1901 PE=2 SV=1 | 4 | 146 | 3.0E-63 |
| sp|P07281|RS19B_YEAST | 40S ribosomal protein S19-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS19B PE=1 SV=2 | 4 | 145 | 1.0E-62 |
| sp|P07280|RS19A_YEAST | 40S ribosomal protein S19-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS19A PE=1 SV=2 | 4 | 145 | 2.0E-62 |
| sp|P79016|RS19B_SCHPO | 40S ribosomal protein S19-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1902 PE=3 SV=2 | 4 | 145 | 3.0E-62 |
| sp|Q8T5Z4|RS19_BRABE | 40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1 | 1 | 143 | 6.0E-50 |
| sp|P17074|RS19_RAT | 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3 | 4 | 146 | 4.0E-46 |
| sp|Q9CZX8|RS19_MOUSE | 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3 | 4 | 146 | 4.0E-46 |
| sp|Q9SGA6|RS191_ARATH | 40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1 | 1 | 137 | 4.0E-46 |
| sp|Q9FNP8|RS193_ARATH | 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1 | 1 | 143 | 1.0E-45 |
| sp|Q9LF30|RS192_ARATH | 40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1 | 1 | 137 | 2.0E-45 |
| sp|Q5R8M9|RS19_PONAB | 40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3 | 4 | 146 | 4.0E-45 |
| sp|Q9Y0H3|RS19_MYXGL | 40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1 | 4 | 137 | 4.0E-45 |
| sp|Q32PD5|RS19_BOVIN | 40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3 | 4 | 146 | 4.0E-45 |
| sp|P39019|RS19_HUMAN | 40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2 | 4 | 146 | 4.0E-45 |
| sp|P61155|RS19_PAGMA | 40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1 | 4 | 146 | 1.0E-44 |
| sp|Q90YQ4|RS19_ICTPU | 40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1 | 3 | 147 | 2.0E-44 |
| sp|Q94613|RS19_MYAAR | 40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1 | 4 | 141 | 2.0E-44 |
| sp|P40978|RS19_ORYSJ | 40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1 | 6 | 137 | 3.0E-44 |
| sp|Q29308|RS19_PIG | 40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3 | 4 | 137 | 5.0E-44 |
| sp|Q9DFR5|RS19_GILMI | 40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1 | 4 | 146 | 6.0E-44 |
| sp|Q8ITC3|RS19_ARGIR | 40S ribosomal protein S19 OS=Argopecten irradians GN=RPS19 PE=2 SV=1 | 4 | 142 | 2.0E-43 |
| sp|P39698|RS19S_ASCSU | 40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1 | 6 | 137 | 2.0E-37 |
| sp|Q54X51|RS19_DICDI | 40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1 | 5 | 138 | 8.0E-37 |
| sp|O15631|RS19_ENTHI | 40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2 SV=1 | 6 | 137 | 2.0E-36 |
| sp|P24494|RS19G_ASCSU | 40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1 | 1 | 144 | 1.0E-35 |
| sp|P39018|RS19A_DROME | 40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=1 SV=3 | 4 | 138 | 2.0E-35 |
| sp|Q7KS38|RS19B_DROME | 40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b PE=2 SV=3 | 4 | 146 | 2.0E-34 |
| sp|O18650|RS19_CAEEL | 40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2 SV=1 | 1 | 146 | 2.0E-33 |
| sp|P54057|RS19E_METJA | 30S ribosomal protein S19e OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rps19e PE=3 SV=1 | 5 | 138 | 3.0E-28 |
| sp|O27653|RS19E_METTH | 30S ribosomal protein S19e OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rps19e PE=3 SV=1 | 6 | 137 | 1.0E-25 |
| sp|Q9V0G8|RS19E_PYRAB | 30S ribosomal protein S19e OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rps19e PE=1 SV=1 | 6 | 146 | 7.0E-24 |
| sp|O59041|RS19E_PYRHO | 30S ribosomal protein S19e OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rps19e PE=3 SV=1 | 6 | 146 | 2.0E-23 |
| sp|Q9YD22|RS19E_AERPE | 30S ribosomal protein S19e OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps19e PE=3 SV=1 | 32 | 142 | 1.0E-20 |
| sp|O28210|RS19E_ARCFU | 30S ribosomal protein S19e OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rps19e PE=3 SV=1 | 6 | 137 | 3.0E-20 |
| sp|P19952|RS19E_HALMA | 30S ribosomal protein S19e OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps19e PE=1 SV=3 | 6 | 137 | 8.0E-17 |
| sp|Q97CU4|RS19E_THEVO | 30S ribosomal protein S19e OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rps19e PE=3 SV=1 | 5 | 148 | 2.0E-16 |
| sp|Q9HM21|RS19E_THEAC | 30S ribosomal protein S19e OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rps19e PE=3 SV=1 | 5 | 148 | 6.0E-16 |
| sp|Q8SQS8|RS19_ENCCU | 40S ribosomal protein S19 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPS19 PE=1 SV=1 | 7 | 116 | 8.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0005840 | ribosome | Yes |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|2977 MAGGITVRDVDAQKFIAAYSAFLKRQGKLPIPGWVDTVKTGPAKELPPQDMDWFYVRAASVARHVYLRKTVGVGR LRKVHGSAKNRGSRPSRHVDASGSVDRKVMQALEKIGVLEQDEEKGGRRITQSGQRDLDRIAQTTAEADEEDDDD E* |
| Coding | >Ophun1|2977 ATGGCAGGCGGCATCACGGTTCGCGACGTCGATGCGCAAAAGTTCATTGCGGCCTATTCGGCCTTTTTGAAGCGG CAGGGGAAGCTGCCGATTCCTGGCTGGGTCGATACCGTCAAAACAGGACCGGCCAAAGAACTCCCCCCGCAAGAC ATGGACTGGTTCTACGTTCGCGCCGCCTCGGTAGCCCGTCACGTCTACCTGCGCAAGACGGTGGGCGTCGGTCGT CTCCGCAAGGTGCACGGCTCGGCCAAGAACCGCGGGAGCCGACCTTCGCGACACGTGGATGCTTCGGGCTCCGTC GACCGCAAGGTTATGCAGGCGCTTGAGAAGATTGGCGTGCTGGAGCAGGATGAGGAGAAGGGGGGCAGGCGGATT ACGCAGTCTGGGCAGCGGGATTTGGATCGGATTGCGCAGACGACGGCTGAGGCGGATGAGGAGGATGATGATGAT GAGTAG |
| Transcript | >Ophun1|2977 ATGGCAGGCGGCATCACGGTTCGCGACGTCGATGCGCAAAAGTTCATTGCGGCCTATTCGGCCTTTTTGAAGCGG CAGGGGAAGCTGCCGATTCCTGGCTGGGTCGATACCGTCAAAACAGGACCGGCCAAAGAACTCCCCCCGCAAGAC ATGGACTGGTTCTACGTTCGCGCCGCCTCGGTAGCCCGTCACGTCTACCTGCGCAAGACGGTGGGCGTCGGTCGT CTCCGCAAGGTGCACGGCTCGGCCAAGAACCGCGGGAGCCGACCTTCGCGACACGTGGATGCTTCGGGCTCCGTC GACCGCAAGGTTATGCAGGCGCTTGAGAAGATTGGCGTGCTGGAGCAGGATGAGGAGAAGGGGGGCAGGCGGATT ACGCAGTCTGGGCAGCGGGATTTGGATCGGATTGCGCAGACGACGGCTGAGGCGGATGAGGAGGATGATGATGAT GAGTAG |
| Gene | >Ophun1|2977 ATGGCAGGCGGCATCACGGTTCGCGACGTCGATGTAGGTCTCCTCCTGGAAAGCGACGACATGGAAAGCCCAGAG CAGGCGTGAGGGGGTCGCGAGACCTCTGAAGACGGAATTTGCTAATGGGTTTGGGGGGGGATATTCAGGCGCAAA AGTTCATTGCGGCCTATTCGGCCTTTTTGAAGCGGCAGGGGAAGCTGCCGATTCCTGGTGAGTCTCTAGGGATTC CTTTCTGCTCTGGGAGCTTCTTTGAATCGTGGGCGGATGGACTGGCTGACGGTTTTATAGGCTGGGTCGATACCG TCAAAACAGGACCGGCCAAAGAACTCCCCCCGCAAGACATGGACTGGTTCTACGTTCGCGCCGCCTCGGTAGCCC GTCACGTCTACCTGCGCAAGACGGTGGGCGTCGGTCGTCTCCGCAAGGTGCACGGCTCGGCCAAGAACCGCGGGA GCCGACCTTCGCGACACGTGGATGCTTCGGGCTCCGTCGACCGCAAGGTTATGCAGGCGCTTGAGAAGATTGGCG TGCTGGAGCAGGATGAGGAGAAGGGGGGCAGGCGGATTACGCAGTCTGGGCAGCGGGATTTGGATCGGATTGCGC AGACGACGGCTGAGGCGGATGAGGAGGATGATGATGATGAGTAG |