Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|2903
Gene name
LocationContig_259:10216..10896
Strand+
Gene length (bp)680
Transcript length (bp)474
Coding sequence length (bp)474
Protein length (aa) 158

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05071 NDUFA12 NADH ubiquinone oxidoreductase subunit NDUFA12 1.6E-30 53 151

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6CG53|N7BM_YARLI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit N7BM OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=N7BM PE=1 SV=1 35 157 1.0E-29
sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1 36 151 3.0E-17
sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1 36 151 3.0E-17
sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1 36 151 3.0E-17
sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1 36 151 1.0E-16
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Swissprot ID Swissprot Description Start End E-value
sp|Q6CG53|N7BM_YARLI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit N7BM OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=N7BM PE=1 SV=1 35 157 1.0E-29
sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1 36 151 3.0E-17
sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1 36 151 3.0E-17
sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1 36 151 3.0E-17
sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1 36 151 1.0E-16
sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1 36 151 6.0E-16
sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2 36 151 9.0E-15
sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2 14 151 2.0E-13
sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2 36 136 1.0E-12
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GO

GO Term Description Terminal node
GO:0032981 mitochondrial respiratory chain complex I assembly Yes
GO:0016020 membrane Yes
GO:0043933 protein-containing complex organization No
GO:0065003 protein-containing complex assembly No
GO:0010257 NADH dehydrogenase complex assembly No
GO:0016043 cellular component organization No
GO:0071840 cellular component organization or biogenesis No
GO:0009987 cellular process No
GO:0005575 cellular_component No
GO:0033108 mitochondrial respiratory chain complex assembly No
GO:0110165 cellular anatomical entity No
GO:0008150 biological_process No
GO:0022607 cellular component assembly No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 34 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|2903
MSTISRTLRNLRKVGLKARLGNWEFMSIVPMLTFIGLQDYFWQMMYIGDTKHGTLIGRDRFGNQFFENKEELPLR
TRWVVYAKHDLDAAHIEPGWHAWMSYMVDRPPTEDALLVAGTRPFEKPHHTPNYTMTRGAFKTYNTTKPKIASWT
PVAAERT*
Coding >Ophun1|2903
ATGTCGACAATATCGCGGACGCTGCGCAACTTGCGCAAAGTCGGTCTGAAGGCACGTCTTGGAAACTGGGAGTTC
ATGTCTATCGTTCCTATGCTAACCTTTATCGGCTTGCAGGACTACTTCTGGCAGATGATGTACATCGGCGACACC
AAACACGGCACCCTCATCGGCCGCGACCGCTTCGGCAACCAATTCTTCGAAAACAAGGAGGAGCTGCCCCTCCGC
ACCCGCTGGGTCGTCTACGCCAAGCACGACCTCGACGCCGCTCACATTGAGCCGGGATGGCACGCCTGGATGAGC
TACATGGTGGACCGTCCGCCGACGGAAGACGCGCTTCTCGTTGCGGGGACGCGGCCGTTTGAGAAGCCGCACCAT
ACGCCGAATTATACTATGACGCGCGGAGCCTTCAAGACGTATAACACGACGAAGCCCAAGATTGCCTCGTGGACG
CCCGTCGCAGCAGAACGGACATGA
Transcript >Ophun1|2903
ATGTCGACAATATCGCGGACGCTGCGCAACTTGCGCAAAGTCGGTCTGAAGGCACGTCTTGGAAACTGGGAGTTC
ATGTCTATCGTTCCTATGCTAACCTTTATCGGCTTGCAGGACTACTTCTGGCAGATGATGTACATCGGCGACACC
AAACACGGCACCCTCATCGGCCGCGACCGCTTCGGCAACCAATTCTTCGAAAACAAGGAGGAGCTGCCCCTCCGC
ACCCGCTGGGTCGTCTACGCCAAGCACGACCTCGACGCCGCTCACATTGAGCCGGGATGGCACGCCTGGATGAGC
TACATGGTGGACCGTCCGCCGACGGAAGACGCGCTTCTCGTTGCGGGGACGCGGCCGTTTGAGAAGCCGCACCAT
ACGCCGAATTATACTATGACGCGCGGAGCCTTCAAGACGTATAACACGACGAAGCCCAAGATTGCCTCGTGGACG
CCCGTCGCAGCAGAACGGACATGA
Gene >Ophun1|2903
ATGTCGACAATATCGCGGACGCTGCGCAACTTGCGCAAAGTCGGTCTGAAGGCACGTCTTGGAAACTGGGAGTTC
ATGTCTATCGTTCCTATGCTAACCTTTATCGGCTTGCAGGACTACTTCTGGCAGATGATGGTTCGTGATAGCCCC
CTCCCTTCTCCCGGAGCCGAGCTGACAATACGCGCCGCAGTACATCGGTCCGTCCCCTCACCATCGCACACCCCA
GACACTCTCTCGAAAGACTCCCCCAAACTAATCACAAGCAACCCCCCCTAGGCGACACCAAACACGGCACCCTCA
TCGGCCGCGACCGCTTCGGCAACCAATTCTTCGAAAACAAGGAGGAGCTGCCCCTCCGCACCCGCTGGGTCGTCT
ACGCCAAGCACGACCTCGACGCCGCTCACATTGAGCCGGGATGGCACGCCTGGATGAGCTACATGGTGGACCGTC
CGCCGACGGAAGACGCGCTTCTCGTTGCGGGGACGCGGCCGTTTGAGAAGCCGCACCATACGCCGAATTATACTA
TGACGCGCGGAGCCTTCAAGACGTATAACACGTGCGTTTATTCTACTCTTCCGTGAAGGCAGCGTGAATTGCTTC
GCTACGGATCGTGCTGACTCTCGCTCAGGACGAAGCCCAAGATTGCCTCGTGGACGCCCGTCGCAGCAGAACGGA
CATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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