Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|2592
Gene name
LocationContig_231:21090..23230
Strand+
Gene length (bp)2140
Transcript length (bp)2025
Coding sequence length (bp)2025
Protein length (aa) 675

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09531 Ndc1_Nup Nucleoporin protein Ndc1-Nup 5.2E-175 17 610

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|G0S235|NDC1_CHATD Nucleoporin NDC1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NDC1 PE=3 SV=1 7 622 2.0E-144
sp|O13961|NDC1_SCHPO Nuclear envelope protein ndc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut11 PE=2 SV=2 11 602 3.0E-18

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.5

Transmembrane Domains

Domain # Start End Length
1 29 48 19
2 52 74 22
3 81 103 22
4 107 126 19
5 147 164 17
6 212 234 22
7 268 290 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|2592
MAVTPSRRAPYKDVLQPALHRRFSSTATLLLAVSYLEALFLAPWTSFFWSWFPFGPCGIRTGLIFACGLAILVLR
IANYQVGFRTTASGLHSLALILSSSGSWETAFWYGFSALLFCPVYLASVSVSSNLQWITYLSGDRARLNERPLFL
ACYLMMCSLWQTLRHYRLDLDHVDFEIPKRKAEDRESDSEAQSGALDVISSQIPKVLSECGVQALWSLGSAFALY
FACLRWFVWGWSMTVLRLFYSLPQSKIPPQSWPMDLFLMARCIYAGTLLFVIWSTGNTAFSLFMAKEPLKNGKPL
TSESKDPNGSLLNGLKSKKPSIQAFAMWELALISRDFDARRQAIYRDIDRKDGPMWAQICAICMELIQGIERRVD
QYGKPDALVVARPAEEVIRQRVSAPLREEPIMSKSYGVMVGVEKAWDQVGRTPGSSAMSELSPLAKKTWKGAKNR
LLSKEQQEALSPDHIRNGLESWAAGLADVWWIGGLLRQDSGKRLAATVLGSPRAEPTVYMHAVEALCELAVHSLA
EDEFGIVQRDVASVIRTMTAVTGKVESLKRQFPSHWTDPAGRAVTSPAVDAVMEALRTGLERLVTTFEPYGRDLG
LSRGDVRLAREAAIRTVEVKDVARAVERKKTAAGPKLRRGQEREREREREGERKRERERERQRAARGVEMEQVR*
Coding >Ophun1|2592
ATGGCCGTGACACCGAGCCGCAGGGCTCCGTACAAGGACGTGCTGCAGCCTGCCTTGCATAGGCGCTTCTCCTCG
ACGGCCACTCTCTTGCTAGCCGTGTCGTATCTCGAGGCTCTTTTCCTGGCGCCGTGGACATCCTTCTTTTGGTCG
TGGTTCCCCTTTGGACCATGCGGCATCCGCACCGGCCTCATCTTCGCATGCGGTCTCGCCATTCTCGTCCTTCGC
ATCGCAAACTACCAAGTCGGCTTCCGGACGACGGCCTCGGGACTTCACTCTCTCGCCTTGATTCTCTCTAGCTCG
GGATCTTGGGAGACGGCCTTTTGGTACGGCTTCTCGGCCTTGCTCTTTTGCCCCGTCTACCTGGCCTCCGTGTCC
GTCTCGTCCAACCTTCAATGGATCACGTATCTGAGCGGTGATCGCGCCAGACTCAACGAGCGGCCTTTGTTTCTG
GCTTGCTATCTGATGATGTGCTCCCTTTGGCAGACCTTGCGCCATTATAGGCTTGATCTGGATCACGTCGACTTC
GAGATACCGAAGCGGAAAGCCGAGGATCGAGAGTCGGACTCTGAAGCGCAGTCGGGGGCTCTCGACGTCATCTCT
TCTCAGATTCCCAAGGTTCTGTCGGAGTGTGGAGTTCAGGCCCTTTGGTCTCTGGGCTCGGCTTTCGCCCTTTAC
TTCGCCTGCTTGAGGTGGTTCGTCTGGGGCTGGTCTATGACCGTATTACGACTATTCTACAGCCTTCCGCAGTCA
AAGATACCGCCGCAATCATGGCCGATGGACCTGTTTCTCATGGCACGCTGCATATACGCCGGCACGCTCTTGTTC
GTCATCTGGTCGACGGGGAATACAGCCTTTTCCCTTTTCATGGCCAAAGAGCCCTTGAAGAACGGGAAGCCTCTG
ACATCGGAGTCGAAGGATCCCAACGGGAGTCTTTTGAACGGGCTCAAGAGTAAAAAACCGTCCATACAGGCCTTT
GCCATGTGGGAGTTGGCGCTCATATCCAGAGACTTTGACGCGCGCAGACAGGCTATATACCGAGACATCGACCGC
AAGGACGGCCCCATGTGGGCGCAGATTTGCGCCATCTGCATGGAACTTATACAGGGCATAGAGCGGCGGGTGGAC
CAATACGGAAAGCCGGACGCGTTGGTCGTCGCTCGGCCCGCAGAAGAGGTCATCAGACAACGGGTATCGGCGCCG
CTGCGGGAGGAGCCCATCATGAGCAAGAGCTACGGGGTGATGGTTGGCGTGGAAAAGGCGTGGGATCAAGTCGGT
CGAACGCCCGGCTCGTCGGCCATGTCCGAGCTGAGCCCGCTGGCGAAGAAGACGTGGAAGGGAGCCAAGAACCGG
CTTCTGAGCAAGGAGCAGCAGGAAGCGCTCTCGCCGGACCACATCAGGAACGGGCTCGAGAGTTGGGCAGCCGGA
TTGGCCGACGTCTGGTGGATCGGGGGTCTACTGCGGCAGGACTCGGGCAAGCGACTGGCAGCGACGGTTCTGGGC
TCGCCGCGCGCAGAGCCGACGGTGTACATGCACGCGGTCGAGGCGCTCTGTGAACTGGCAGTGCACAGCCTCGCG
GAAGACGAGTTCGGCATCGTGCAGCGAGACGTGGCGAGCGTGATACGGACCATGACAGCGGTGACGGGAAAGGTG
GAATCGCTCAAGCGGCAGTTCCCCAGTCACTGGACGGACCCTGCCGGGAGGGCGGTGACGAGTCCGGCCGTGGAC
GCGGTGATGGAGGCGCTGCGTACGGGGCTGGAGCGGCTGGTGACGACGTTTGAGCCCTACGGACGCGATCTGGGG
CTGTCGCGGGGAGACGTCCGGCTGGCGAGGGAGGCGGCGATTCGGACGGTCGAGGTCAAGGACGTGGCACGGGCC
GTGGAGAGGAAGAAGACGGCGGCGGGGCCGAAGCTGAGGAGAGGGCAGGAAAGGGAGAGGGAGAGGGAGAGGGAG
GGAGAACGGAAGCGCGAGAGGGAGCGGGAGAGACAGAGGGCGGCACGTGGCGTGGAGATGGAACAGGTTCGATGA
Transcript >Ophun1|2592
ATGGCCGTGACACCGAGCCGCAGGGCTCCGTACAAGGACGTGCTGCAGCCTGCCTTGCATAGGCGCTTCTCCTCG
ACGGCCACTCTCTTGCTAGCCGTGTCGTATCTCGAGGCTCTTTTCCTGGCGCCGTGGACATCCTTCTTTTGGTCG
TGGTTCCCCTTTGGACCATGCGGCATCCGCACCGGCCTCATCTTCGCATGCGGTCTCGCCATTCTCGTCCTTCGC
ATCGCAAACTACCAAGTCGGCTTCCGGACGACGGCCTCGGGACTTCACTCTCTCGCCTTGATTCTCTCTAGCTCG
GGATCTTGGGAGACGGCCTTTTGGTACGGCTTCTCGGCCTTGCTCTTTTGCCCCGTCTACCTGGCCTCCGTGTCC
GTCTCGTCCAACCTTCAATGGATCACGTATCTGAGCGGTGATCGCGCCAGACTCAACGAGCGGCCTTTGTTTCTG
GCTTGCTATCTGATGATGTGCTCCCTTTGGCAGACCTTGCGCCATTATAGGCTTGATCTGGATCACGTCGACTTC
GAGATACCGAAGCGGAAAGCCGAGGATCGAGAGTCGGACTCTGAAGCGCAGTCGGGGGCTCTCGACGTCATCTCT
TCTCAGATTCCCAAGGTTCTGTCGGAGTGTGGAGTTCAGGCCCTTTGGTCTCTGGGCTCGGCTTTCGCCCTTTAC
TTCGCCTGCTTGAGGTGGTTCGTCTGGGGCTGGTCTATGACCGTATTACGACTATTCTACAGCCTTCCGCAGTCA
AAGATACCGCCGCAATCATGGCCGATGGACCTGTTTCTCATGGCACGCTGCATATACGCCGGCACGCTCTTGTTC
GTCATCTGGTCGACGGGGAATACAGCCTTTTCCCTTTTCATGGCCAAAGAGCCCTTGAAGAACGGGAAGCCTCTG
ACATCGGAGTCGAAGGATCCCAACGGGAGTCTTTTGAACGGGCTCAAGAGTAAAAAACCGTCCATACAGGCCTTT
GCCATGTGGGAGTTGGCGCTCATATCCAGAGACTTTGACGCGCGCAGACAGGCTATATACCGAGACATCGACCGC
AAGGACGGCCCCATGTGGGCGCAGATTTGCGCCATCTGCATGGAACTTATACAGGGCATAGAGCGGCGGGTGGAC
CAATACGGAAAGCCGGACGCGTTGGTCGTCGCTCGGCCCGCAGAAGAGGTCATCAGACAACGGGTATCGGCGCCG
CTGCGGGAGGAGCCCATCATGAGCAAGAGCTACGGGGTGATGGTTGGCGTGGAAAAGGCGTGGGATCAAGTCGGT
CGAACGCCCGGCTCGTCGGCCATGTCCGAGCTGAGCCCGCTGGCGAAGAAGACGTGGAAGGGAGCCAAGAACCGG
CTTCTGAGCAAGGAGCAGCAGGAAGCGCTCTCGCCGGACCACATCAGGAACGGGCTCGAGAGTTGGGCAGCCGGA
TTGGCCGACGTCTGGTGGATCGGGGGTCTACTGCGGCAGGACTCGGGCAAGCGACTGGCAGCGACGGTTCTGGGC
TCGCCGCGCGCAGAGCCGACGGTGTACATGCACGCGGTCGAGGCGCTCTGTGAACTGGCAGTGCACAGCCTCGCG
GAAGACGAGTTCGGCATCGTGCAGCGAGACGTGGCGAGCGTGATACGGACCATGACAGCGGTGACGGGAAAGGTG
GAATCGCTCAAGCGGCAGTTCCCCAGTCACTGGACGGACCCTGCCGGGAGGGCGGTGACGAGTCCGGCCGTGGAC
GCGGTGATGGAGGCGCTGCGTACGGGGCTGGAGCGGCTGGTGACGACGTTTGAGCCCTACGGACGCGATCTGGGG
CTGTCGCGGGGAGACGTCCGGCTGGCGAGGGAGGCGGCGATTCGGACGGTCGAGGTCAAGGACGTGGCACGGGCC
GTGGAGAGGAAGAAGACGGCGGCGGGGCCGAAGCTGAGGAGAGGGCAGGAAAGGGAGAGGGAGAGGGAGAGGGAG
GGAGAACGGAAGCGCGAGAGGGAGCGGGAGAGACAGAGGGCGGCACGTGGCGTGGAGATGGAACAGGTTCGATGA
Gene >Ophun1|2592
ATGGCCGTGACACCGAGCCGCAGGGCTCCGTACAAGGACGTGCTGCAGCCTGCCTTGCATAGGCGCTTCTCCTCG
ACGGCCACTCTCTTGCTAGCCGTGTCGTATCTCGAGGCTCTTTTCCTGGCGCCGTGGACATCCTGTGAGCACATC
GTTGTGCGCGGTGATGATGCAGAGCTGACGAGACGCAGTCTTTTGGTCGTGGTTCCCCTTTGGACCATGCGGCAT
CCGCACCGGCCTCATCTTCGCATGCGGTCTCGCCATTCTCGTCCTTCGCATCGCAAACTACCAAGTCGGCTTCCG
GACGACGGCCTCGGGACTTCACTCTCTCGCCTTGATTCTCTCTAGCTCGGGATCTTGGGAGACGGCCTTTTGGTA
CGGCTTCTCGGCCTTGCTCTTTTGCCCCGTCTACCTGGCCTCCGTGTCCGTCTCGTCCAACCTTCAATGGATCAC
GTATCTGAGCGGTGATCGCGCCAGACTCAACGAGCGGCCTTTGTTTCTGGCTTGCTATCTGATGATGTGCTCCCT
TTGGCAGACCTTGCGCCATTATAGGCTTGATCTGGATCACGTCGACTTCGAGATACCGAAGCGGAAAGCCGAGGA
TCGAGAGTCGGACTCTGAAGCGCAGTCGGGGGCTCTCGACGTCATCTCTTCTCAGATTCCCAAGGTTCTGTCGGA
GTGTGGAGTTCAGGCCCTTTGGTCTCTGGGCTCGGCTTTCGCCCTTTACTTCGCCTGCTTGAGGTGGTTCGTCTG
GGGCTGGTCTATGACCGTATTACGACTATTCTACAGCCTTCCGCAGTCAAAGATACCGCCGCAATCATGGCCGAT
GGACCTGTTTCTCATGGCACGCTGCATATACGCCGGCACGCTCTTGTTCGTCATCTGGTCGACGGGGAATACAGC
CTTTTCCCTTTTCATGGCCAAAGAGCCCTTGAAGAACGGGAAGCCTCTGACATCGGAGTCGAAGGATCCCAACGG
GAGTCTTTTGAACGGGCTCAAGAGTAAAAAACCGTCCATACAGGTATGTCTAGCCAGCCAGCTACTGGTTCCGGT
ATGGTGATACCATCTTGGCTAACATGGACATTAGGCCTTTGCCATGTGGGAGTTGGCGCTCATATCCAGAGACTT
TGACGCGCGCAGACAGGCTATATACCGAGACATCGACCGCAAGGACGGCCCCATGTGGGCGCAGATTTGCGCCAT
CTGCATGGAACTTATACAGGGCATAGAGCGGCGGGTGGACCAATACGGAAAGCCGGACGCGTTGGTCGTCGCTCG
GCCCGCAGAAGAGGTCATCAGACAACGGGTATCGGCGCCGCTGCGGGAGGAGCCCATCATGAGCAAGAGCTACGG
GGTGATGGTTGGCGTGGAAAAGGCGTGGGATCAAGTCGGTCGAACGCCCGGCTCGTCGGCCATGTCCGAGCTGAG
CCCGCTGGCGAAGAAGACGTGGAAGGGAGCCAAGAACCGGCTTCTGAGCAAGGAGCAGCAGGAAGCGCTCTCGCC
GGACCACATCAGGAACGGGCTCGAGAGTTGGGCAGCCGGATTGGCCGACGTCTGGTGGATCGGGGGTCTACTGCG
GCAGGACTCGGGCAAGCGACTGGCAGCGACGGTTCTGGGCTCGCCGCGCGCAGAGCCGACGGTGTACATGCACGC
GGTCGAGGCGCTCTGTGAACTGGCAGTGCACAGCCTCGCGGAAGACGAGTTCGGCATCGTGCAGCGAGACGTGGC
GAGCGTGATACGGACCATGACAGCGGTGACGGGAAAGGTGGAATCGCTCAAGCGGCAGTTCCCCAGTCACTGGAC
GGACCCTGCCGGGAGGGCGGTGACGAGTCCGGCCGTGGACGCGGTGATGGAGGCGCTGCGTACGGGGCTGGAGCG
GCTGGTGACGACGTTTGAGCCCTACGGACGCGATCTGGGGCTGTCGCGGGGAGACGTCCGGCTGGCGAGGGAGGC
GGCGATTCGGACGGTCGAGGTCAAGGACGTGGCACGGGCCGTGGAGAGGAAGAAGACGGCGGCGGGGCCGAAGCT
GAGGAGAGGGCAGGAAAGGGAGAGGGAGAGGGAGAGGGAGGGAGAACGGAAGCGCGAGAGGGAGCGGGAGAGACA
GAGGGCGGCACGTGGCGTGGAGATGGAACAGGTTCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail