© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|2546 |
| Gene name | |
| Location | Contig_23:4876..7222 |
| Strand | + |
| Gene length (bp) | 2346 |
| Transcript length (bp) | 2199 |
| Coding sequence length (bp) | 2199 |
| Protein length (aa) | 733 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04152 | Mre11_DNA_bind | Mre11 DNA-binding presumed domain | 3.6E-55 | 295 | 469 |
| PF00149 | Metallophos | Calcineurin-like phosphoesterase | 3.4E-14 | 10 | 250 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9C291|MRE11_NEUCR | Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 | 5 | 567 | 0.0E+00 |
| sp|Q09683|RAD32_SCHPO | DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 | 2 | 503 | 2.0E-177 |
| sp|P32829|MRE11_YEAST | Double-strand break repair protein MRE11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1 SV=2 | 6 | 691 | 2.0E-160 |
| sp|Q9UVN9|MRE11_COPC7 | Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 | 8 | 493 | 2.0E-133 |
| sp|Q60HE6|MRE11_MACFA | Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 | 4 | 486 | 2.0E-129 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9C291|MRE11_NEUCR | Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 | 5 | 567 | 0.0E+00 |
| sp|Q09683|RAD32_SCHPO | DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 | 2 | 503 | 2.0E-177 |
| sp|P32829|MRE11_YEAST | Double-strand break repair protein MRE11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1 SV=2 | 6 | 691 | 2.0E-160 |
| sp|Q9UVN9|MRE11_COPC7 | Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 | 8 | 493 | 2.0E-133 |
| sp|Q60HE6|MRE11_MACFA | Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 | 4 | 486 | 2.0E-129 |
| sp|P49959|MRE11_HUMAN | Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A PE=1 SV=3 | 4 | 486 | 1.0E-128 |
| sp|Q61216|MRE11_MOUSE | Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a PE=1 SV=1 | 4 | 685 | 4.0E-128 |
| sp|Q9W6K1|MRE11_XENLA | Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11 PE=2 SV=1 | 4 | 486 | 5.0E-128 |
| sp|Q9JIM0|MRE11_RAT | Double-strand break repair protein MRE11A OS=Rattus norvegicus GN=Mre11a PE=1 SV=1 | 4 | 486 | 4.0E-127 |
| sp|Q9XGM2|MRE11_ARATH | Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=1 SV=1 | 1 | 486 | 2.0E-124 |
| sp|Q7XQR9|MRE11_ORYSJ | Double-strand break repair protein MRE11 OS=Oryza sativa subsp. japonica GN=MRE11 PE=1 SV=2 | 6 | 590 | 5.0E-122 |
| sp|Q25AA3|MRE11_ORYSI | Double-strand break repair protein MRE11 OS=Oryza sativa subsp. indica GN=H0410G08.11 PE=3 SV=1 | 6 | 590 | 5.0E-122 |
| sp|Q9IAM7|MRE11_CHICK | Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11 PE=2 SV=1 | 8 | 486 | 2.0E-120 |
| sp|Q23255|MRE11_CAEEL | Double-strand break repair protein mre-11 OS=Caenorhabditis elegans GN=mre-11 PE=1 SV=2 | 8 | 471 | 1.0E-96 |
| sp|Q8SRV0|MRE11_ENCCU | Double-strand break repair protein MRE11 OS=Encephalitozoon cuniculi (strain GB-M1) GN=MRE11 PE=3 SV=1 | 10 | 508 | 6.0E-69 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004519 | endonuclease activity | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0006302 | double-strand break repair | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0030145 | manganese ion binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0043229 | intracellular organelle | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0003824 | catalytic activity | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0044238 | primary metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0006950 | response to stress | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0004518 | nuclease activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0033554 | cellular response to stress | No |
| GO:0006281 | DNA repair | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043167 | ion binding | No |
| GO:0043226 | organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|2546 MSELTEADTIRILVATDNHVGFEERDAIRKDDSWRTFDEIMNIARTEDACFSPVDMVLLAGDLFHDNKPSRKSLY QVMRALRKNCLGMKPCPLEFLSDAAEVFEGAFTHVNYEDPDINISIPVFSIHGNHDDPSGDGNLCSLDLLQASGL LNYFGRVAEADNIEAKPILLQKGLTKLALFGLSNVRDERMFRTFRDHKVKWFRPNVQMGDWFNLLAVHQNHHAHT ATSYLPENVLPDWLDLVVWGHEHECLIDPTKNPETGFHVMQPGSSVATSLVPGEAVQKHVAIVSVTGKDFRVDKI PLQTVRPFVTRELVLSQDNRFKGLDKKKDNRQEVTRRLMEVVEEMIEEANADWEAIQTSDTALEERPLPLIRLKV EYGAQEGCQFECENPQRFSNRFVGKVANTNDVVYFHRKKTSIKKATAVTPAETLEALAEGSDVVKVESLVRDFLS AQSLKVLPQGPFGEAVNQFVAKDDKHAMELFVSEHLTGQVKQLLGLESDDEDLNGAMEIYRTRIEQQVANGAARQ QGGRKRILRPKPDTWDSDFDGNWEDEPDAWTFEDATLNVDSRSKTQLKGKSSTVKSRKGTGGRMPDAGEDDGPVP RAGTKARAARSTTTPKTTTRKTASTRGRGQQVVDENHDGADEDIIMESDGDPPPPKAETKTRRAQATRATTSKRA TTTTTTTRGAAKGRQTKLNFSQKGATQDQALEVSDDDISDDDDAFEPAPVATRTRRR* |
| Coding | >Ophun1|2546 ATGAGCGAACTTACAGAGGCGGATACGATCCGAATCTTGGTTGCAACCGACAACCACGTCGGCTTCGAGGAGCGC GACGCCATCCGAAAAGATGACAGCTGGCGCACATTTGACGAGATCATGAACATTGCGAGAACAGAAGACGCATGT TTCTCTCCTGTTGACATGGTCCTGCTCGCTGGCGATCTTTTCCACGACAACAAACCCTCTCGCAAGTCGCTATAC CAAGTCATGCGGGCCTTGCGCAAGAACTGTCTCGGGATGAAGCCATGTCCCCTCGAGTTTCTCTCCGACGCCGCA GAGGTCTTTGAAGGAGCCTTCACCCATGTCAACTACGAAGACCCTGACATCAATATCTCGATCCCCGTCTTCTCC ATTCACGGAAATCACGACGACCCCTCCGGCGACGGTAACCTGTGCTCCCTGGATCTGCTGCAGGCTAGCGGGCTT CTCAACTACTTTGGCCGCGTGGCTGAAGCTGACAACATCGAGGCCAAGCCCATCCTGCTTCAGAAGGGCCTCACG AAATTGGCTCTGTTTGGGCTCAGCAACGTCCGCGACGAACGCATGTTTCGCACCTTTAGGGACCACAAAGTCAAA TGGTTCCGTCCAAATGTACAGATGGGCGACTGGTTCAACCTGCTGGCCGTACATCAGAACCACCACGCCCATACC GCCACATCTTACTTACCCGAAAACGTGCTTCCCGACTGGCTGGATCTCGTTGTGTGGGGGCATGAACACGAATGT CTCATCGATCCCACGAAAAATCCCGAGACTGGTTTCCATGTCATGCAGCCCGGCTCGTCCGTTGCCACCTCACTG GTGCCTGGGGAGGCTGTTCAGAAACACGTGGCCATTGTCAGCGTCACTGGAAAGGACTTTCGAGTCGACAAGATC CCGCTGCAGACTGTGCGGCCATTTGTCACCCGTGAGCTTGTTCTGTCCCAGGACAACAGGTTCAAGGGCCTGGAC AAGAAGAAGGACAACAGGCAGGAGGTGACACGACGATTGATGGAGGTCGTTGAAGAGATGATTGAGGAAGCAAAT GCCGACTGGGAAGCAATCCAGACGAGCGACACTGCACTCGAAGAGCGTCCTCTGCCACTCATCCGCCTCAAGGTG GAATACGGCGCTCAAGAAGGGTGCCAGTTCGAATGCGAAAACCCTCAGCGCTTCTCGAACAGATTTGTCGGCAAG GTGGCCAATACAAATGACGTGGTCTATTTTCACCGGAAGAAGACCTCCATCAAGAAAGCCACGGCCGTCACACCG GCAGAAACGCTGGAAGCCCTCGCCGAAGGCAGCGACGTTGTCAAGGTTGAATCGCTTGTCCGGGACTTTTTGTCG GCCCAGTCCCTCAAGGTGCTGCCGCAAGGCCCCTTCGGCGAAGCTGTCAACCAGTTTGTCGCCAAAGATGACAAG CACGCCATGGAGCTATTCGTCTCAGAGCACCTTACGGGCCAGGTGAAGCAGCTGCTGGGTCTCGAGTCGGACGAT GAAGACCTCAACGGTGCTATGGAAATTTACCGCACGAGAATAGAACAGCAGGTGGCGAATGGGGCAGCGAGACAG CAAGGGGGAAGAAAGCGCATTCTGAGGCCCAAACCCGATACTTGGGATAGTGATTTTGACGGGAACTGGGAGGAT GAGCCCGATGCTTGGACATTTGAGGACGCGACTCTCAACGTTGACTCCAGATCAAAGACACAACTCAAGGGGAAA TCATCGACAGTGAAATCCCGCAAGGGCACTGGTGGCAGGATGCCAGACGCAGGAGAAGACGACGGACCAGTTCCA AGGGCTGGGACGAAGGCAAGGGCAGCAAGGTCGACTACGACACCAAAGACAACCACGAGAAAGACGGCATCTACT CGGGGTCGTGGACAGCAAGTTGTCGACGAAAACCATGACGGGGCCGATGAGGATATCATCATGGAGTCAGACGGG GATCCGCCGCCGCCAAAAGCCGAAACCAAGACGCGGCGGGCTCAAGCTACCAGAGCAACCACTTCAAAACGAGCG ACGACGACGACGACGACGACGAGAGGCGCAGCAAAGGGGCGGCAGACTAAACTCAACTTTTCGCAAAAAGGAGCG ACGCAGGACCAGGCGCTGGAAGTCAGCGACGACGACATCTCGGACGATGACGACGCGTTTGAGCCGGCGCCAGTG GCAACGAGAACGAGGAGACGGTGA |
| Transcript | >Ophun1|2546 ATGAGCGAACTTACAGAGGCGGATACGATCCGAATCTTGGTTGCAACCGACAACCACGTCGGCTTCGAGGAGCGC GACGCCATCCGAAAAGATGACAGCTGGCGCACATTTGACGAGATCATGAACATTGCGAGAACAGAAGACGCATGT TTCTCTCCTGTTGACATGGTCCTGCTCGCTGGCGATCTTTTCCACGACAACAAACCCTCTCGCAAGTCGCTATAC CAAGTCATGCGGGCCTTGCGCAAGAACTGTCTCGGGATGAAGCCATGTCCCCTCGAGTTTCTCTCCGACGCCGCA GAGGTCTTTGAAGGAGCCTTCACCCATGTCAACTACGAAGACCCTGACATCAATATCTCGATCCCCGTCTTCTCC ATTCACGGAAATCACGACGACCCCTCCGGCGACGGTAACCTGTGCTCCCTGGATCTGCTGCAGGCTAGCGGGCTT CTCAACTACTTTGGCCGCGTGGCTGAAGCTGACAACATCGAGGCCAAGCCCATCCTGCTTCAGAAGGGCCTCACG AAATTGGCTCTGTTTGGGCTCAGCAACGTCCGCGACGAACGCATGTTTCGCACCTTTAGGGACCACAAAGTCAAA TGGTTCCGTCCAAATGTACAGATGGGCGACTGGTTCAACCTGCTGGCCGTACATCAGAACCACCACGCCCATACC GCCACATCTTACTTACCCGAAAACGTGCTTCCCGACTGGCTGGATCTCGTTGTGTGGGGGCATGAACACGAATGT CTCATCGATCCCACGAAAAATCCCGAGACTGGTTTCCATGTCATGCAGCCCGGCTCGTCCGTTGCCACCTCACTG GTGCCTGGGGAGGCTGTTCAGAAACACGTGGCCATTGTCAGCGTCACTGGAAAGGACTTTCGAGTCGACAAGATC CCGCTGCAGACTGTGCGGCCATTTGTCACCCGTGAGCTTGTTCTGTCCCAGGACAACAGGTTCAAGGGCCTGGAC AAGAAGAAGGACAACAGGCAGGAGGTGACACGACGATTGATGGAGGTCGTTGAAGAGATGATTGAGGAAGCAAAT GCCGACTGGGAAGCAATCCAGACGAGCGACACTGCACTCGAAGAGCGTCCTCTGCCACTCATCCGCCTCAAGGTG GAATACGGCGCTCAAGAAGGGTGCCAGTTCGAATGCGAAAACCCTCAGCGCTTCTCGAACAGATTTGTCGGCAAG GTGGCCAATACAAATGACGTGGTCTATTTTCACCGGAAGAAGACCTCCATCAAGAAAGCCACGGCCGTCACACCG GCAGAAACGCTGGAAGCCCTCGCCGAAGGCAGCGACGTTGTCAAGGTTGAATCGCTTGTCCGGGACTTTTTGTCG GCCCAGTCCCTCAAGGTGCTGCCGCAAGGCCCCTTCGGCGAAGCTGTCAACCAGTTTGTCGCCAAAGATGACAAG CACGCCATGGAGCTATTCGTCTCAGAGCACCTTACGGGCCAGGTGAAGCAGCTGCTGGGTCTCGAGTCGGACGAT GAAGACCTCAACGGTGCTATGGAAATTTACCGCACGAGAATAGAACAGCAGGTGGCGAATGGGGCAGCGAGACAG CAAGGGGGAAGAAAGCGCATTCTGAGGCCCAAACCCGATACTTGGGATAGTGATTTTGACGGGAACTGGGAGGAT GAGCCCGATGCTTGGACATTTGAGGACGCGACTCTCAACGTTGACTCCAGATCAAAGACACAACTCAAGGGGAAA TCATCGACAGTGAAATCCCGCAAGGGCACTGGTGGCAGGATGCCAGACGCAGGAGAAGACGACGGACCAGTTCCA AGGGCTGGGACGAAGGCAAGGGCAGCAAGGTCGACTACGACACCAAAGACAACCACGAGAAAGACGGCATCTACT CGGGGTCGTGGACAGCAAGTTGTCGACGAAAACCATGACGGGGCCGATGAGGATATCATCATGGAGTCAGACGGG GATCCGCCGCCGCCAAAAGCCGAAACCAAGACGCGGCGGGCTCAAGCTACCAGAGCAACCACTTCAAAACGAGCG ACGACGACGACGACGACGACGAGAGGCGCAGCAAAGGGGCGGCAGACTAAACTCAACTTTTCGCAAAAAGGAGCG ACGCAGGACCAGGCGCTGGAAGTCAGCGACGACGACATCTCGGACGATGACGACGCGTTTGAGCCGGCGCCAGTG GCAACGAGAACGAGGAGACGGTGA |
| Gene | >Ophun1|2546 ATGAGCGAACTTACAGGTAGGACCAAGTAATCGCAAACTCTTGCTACTACACGCTCTAAGATACACTATTTCCAG AGGCGGATACGATCCGAATCTTGGTTGCAACCGACAACCACGTCGGCTTCGAGGAGCGCGACGCCATCCGAAAAG ATGACAGCTGGCGCACATTTGACGAGATCATGAACATTGCGAGAACAGAAGACGCATGTTTCTCTCCTGTTTCCA TACGCTTCTCTCGGCTAACAGACGTCGATTAGGTTGACATGGTCCTGCTCGCTGGCGATCTTTTCCACGACAACA AACCCTCTCGCAAGTCGCTATACCAAGTCATGCGGGCCTTGCGCAAGAACTGTCTCGGGATGAAGCCATGTCCCC TCGAGTTTCTCTCCGACGCCGCAGAGGTCTTTGAAGGAGCCTTCACCCATGTCAACTACGAAGACCCTGACATCA ATATCTCGATCCCCGTCTTCTCCATTCACGGAAATCACGACGACCCCTCCGGCGACGGTAACCTGTGCTCCCTGG ATCTGCTGCAGGCTAGCGGGCTTCTCAACTACTTTGGCCGCGTGGCTGAAGCTGACAACATCGAGGCCAAGCCCA TCCTGCTTCAGAAGGGCCTCACGAAATTGGCTCTGTTTGGGCTCAGCAACGTCCGCGACGAACGCATGTTTCGCA CCTTTAGGGACCACAAAGTCAAATGGTTCCGTCCAAATGTACAGATGGGCGACTGGTTCAACCTGCTGGCCGTAC ATCAGAACCACCACGCCCATACCGCCACATCTTACTTACCCGAAAACGTGCTTCCCGACTGGCTGGATCTCGTTG TGTGGGGGCATGAACACGAATGTCTCATCGATCCCACGAAAAATCCCGAGACTGGTTTCCATGTCATGCAGCCCG GCTCGTCCGTTGCCACCTCACTGGTGCCTGGGGAGGCTGTTCAGAAACACGTGGCCATTGTCAGCGTCACTGGAA AGGACTTTCGAGTCGACAAGATCCCGCTGCAGACTGTGCGGCCATTTGTCACCCGTGAGCTTGTTCTGTCCCAGG ACAACAGGTTCAAGGGCCTGGACAAGAAGAAGGACAACAGGCAGGAGGTGACACGACGATTGATGGAGGTCGTTG AAGAGATGATTGAGGAAGCAAATGCCGACTGGGAAGCAATCCAGACGAGCGACACTGCACTCGAAGAGCGTCCTC TGCCACTCATCCGCCTCAAGGTGGAATACGGCGCTCAAGAAGGGTGCCAGTTCGAATGCGAAAACCCTCAGCGCT TCTCGAACAGATTTGTCGGCAAGGTGGCCAATACAAATGACGTGGTCTATTTTCACCGGAAGAAGACCTCCATCA GTAAGTGCGGCTTACTCTTCTCCATCCTTGATGCTGATATCCGCTCAAGAGAAAGCCACGGCCGTCACACCGGCA GAAACGCTGGAAGCCCTCGCCGAAGGCAGCGACGTTGTCAAGGTTGAATCGCTTGTCCGGGACTTTTTGTCGGCC CAGTCCCTCAAGGTGCTGCCGCAAGGCCCCTTCGGCGAAGCTGTCAACCAGTTTGTCGCCAAAGATGACAAGCAC GCCATGGAGCTATTCGTCTCAGAGCACCTTACGGGCCAGGTGAAGCAGCTGCTGGGTCTCGAGTCGGACGATGAA GACCTCAACGGTGCTATGGAAATTTACCGCACGAGAATAGAACAGCAGGTGGCGAATGGGGCAGCGAGACAGCAA GGGGGAAGAAAGCGCATTCTGAGGCCCAAACCCGATACTTGGGATAGTGATTTTGACGGGAACTGGGAGGATGAG CCCGATGCTTGGACATTTGAGGACGCGACTCTCAACGTTGACTCCAGATCAAAGACACAACTCAAGGGGAAATCA TCGACAGTGAAATCCCGCAAGGGCACTGGTGGCAGGATGCCAGACGCAGGAGAAGACGACGGACCAGTTCCAAGG GCTGGGACGAAGGCAAGGGCAGCAAGGTCGACTACGACACCAAAGACAACCACGAGAAAGACGGCATCTACTCGG GGTCGTGGACAGCAAGTTGTCGACGAAAACCATGACGGGGCCGATGAGGATATCATCATGGAGTCAGACGGGGAT CCGCCGCCGCCAAAAGCCGAAACCAAGACGCGGCGGGCTCAAGCTACCAGAGCAACCACTTCAAAACGAGCGACG ACGACGACGACGACGACGAGAGGCGCAGCAAAGGGGCGGCAGACTAAACTCAACTTTTCGCAAAAAGGAGCGACG CAGGACCAGGCGCTGGAAGTCAGCGACGACGACATCTCGGACGATGACGACGCGTTTGAGCCGGCGCCAGTGGCA ACGAGAACGAGGAGACGGTGA |