© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|2483 |
| Gene name | |
| Location | Contig_224:7961..8579 |
| Strand | + |
| Gene length (bp) | 618 |
| Transcript length (bp) | 618 |
| Coding sequence length (bp) | 618 |
| Protein length (aa) | 206 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13774 | Longin | Regulated-SNARE-like domain | 1.4E-25 | 24 | 107 |
| PF00957 | Synaptobrevin | Synaptobrevin | 2.0E-14 | 123 | 202 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7L0|SEC22_SCHPO | Protein transport protein sec22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec22 PE=3 SV=2 | 2 | 205 | 2.0E-71 |
| sp|Q6C880|SEC22_YARLI | Protein transport protein SEC22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC22 PE=3 SV=1 | 2 | 205 | 2.0E-70 |
| sp|Q6CJA0|SEC22_KLULA | Protein transport protein SEC22 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC22 PE=3 SV=1 | 2 | 204 | 9.0E-64 |
| sp|Q74ZD2|SEC22_ASHGO | Protein transport protein SEC22 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC22 PE=3 SV=2 | 2 | 205 | 2.0E-63 |
| sp|P22214|SEC22_YEAST | Protein transport protein SEC22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC22 PE=1 SV=1 | 2 | 202 | 6.0E-62 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7L0|SEC22_SCHPO | Protein transport protein sec22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec22 PE=3 SV=2 | 2 | 205 | 2.0E-71 |
| sp|Q6C880|SEC22_YARLI | Protein transport protein SEC22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC22 PE=3 SV=1 | 2 | 205 | 2.0E-70 |
| sp|Q6CJA0|SEC22_KLULA | Protein transport protein SEC22 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC22 PE=3 SV=1 | 2 | 204 | 9.0E-64 |
| sp|Q74ZD2|SEC22_ASHGO | Protein transport protein SEC22 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC22 PE=3 SV=2 | 2 | 205 | 2.0E-63 |
| sp|P22214|SEC22_YEAST | Protein transport protein SEC22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC22 PE=1 SV=1 | 2 | 202 | 6.0E-62 |
| sp|Q6FWT0|SEC22_CANGA | Protein transport protein SEC22 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC22 PE=3 SV=1 | 2 | 193 | 5.0E-55 |
| sp|O08595|SC22B_CRIGR | Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3 | 2 | 205 | 4.0E-45 |
| sp|Q4KM74|SC22B_RAT | Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3 | 2 | 205 | 4.0E-45 |
| sp|Q5RAI9|SC22B_PONAB | Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3 | 2 | 205 | 4.0E-45 |
| sp|O08547|SC22B_MOUSE | Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3 | 2 | 205 | 4.0E-45 |
| sp|Q6P7L4|SC22B_XENTR | Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1 | 2 | 205 | 7.0E-45 |
| sp|Q7SXP0|S22BB_DANRE | Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1 | 2 | 205 | 3.0E-44 |
| sp|Q94AU2|SEC22_ARATH | 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1 | 20 | 203 | 4.0E-44 |
| sp|Q5ZJW4|SC22B_CHICK | Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1 | 2 | 205 | 5.0E-44 |
| sp|O75396|SC22B_HUMAN | Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=4 | 2 | 205 | 8.0E-42 |
| sp|Q7ZV15|S22BA_DANRE | Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1 | 2 | 205 | 7.0E-41 |
| sp|Q96IW7|SC22A_HUMAN | Vesicle-trafficking protein SEC22a OS=Homo sapiens GN=SEC22A PE=1 SV=1 | 2 | 133 | 2.0E-15 |
| sp|Q4R866|SC22A_MACFA | Vesicle-trafficking protein SEC22a OS=Macaca fascicularis GN=SEC22A PE=2 SV=1 | 2 | 133 | 3.0E-15 |
| sp|Q8BH47|SC22A_MOUSE | Vesicle-trafficking protein SEC22a OS=Mus musculus GN=Sec22a PE=2 SV=1 | 2 | 130 | 5.0E-14 |
| sp|Q642F4|SC22A_RAT | Vesicle-trafficking protein SEC22a OS=Rattus norvegicus GN=Sec22a PE=2 SV=1 | 2 | 130 | 2.0E-13 |
| sp|Q9FMR5|VA714_ARATH | Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1 | 26 | 202 | 5.0E-13 |
| sp|Q54NW7|VAM7A_DICDI | Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1 | 28 | 200 | 1.0E-10 |
| sp|P36015|YKT6_YEAST | Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKT6 PE=1 SV=1 | 31 | 178 | 4.0E-10 |
| sp|Q6FW27|YKT6_CANGA | Synaptobrevin homolog YKT6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YKT6 PE=3 SV=1 | 31 | 178 | 5.0E-10 |
| sp|Q5ZL74|VAMP7_CHICK | Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1 | 45 | 171 | 2.0E-09 |
| sp|O60073|YKT6_SCHPO | Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ykt6 PE=3 SV=1 | 34 | 178 | 2.0E-09 |
| sp|Q757A4|YKT6_ASHGO | Synaptobrevin homolog YKT6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YKT6 PE=3 SV=1 | 32 | 178 | 3.0E-09 |
| sp|Q6CSA2|YKT6_KLULA | Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YKT6 PE=3 SV=1 | 32 | 178 | 3.0E-09 |
| sp|Q8BXT9|SC22C_MOUSE | Vesicle-trafficking protein SEC22c OS=Mus musculus GN=Sec22c PE=2 SV=1 | 18 | 133 | 5.0E-09 |
| sp|Q6C537|YKT6_YARLI | Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YKT6 PE=3 SV=1 | 47 | 178 | 1.0E-08 |
| sp|P70280|VAMP7_MOUSE | Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=1 SV=1 | 45 | 171 | 2.0E-08 |
| sp|Q17QI5|VAMP7_BOVIN | Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1 | 45 | 171 | 2.0E-08 |
| sp|Q5RF94|VAMP7_PONAB | Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3 | 45 | 171 | 2.0E-08 |
| sp|Q6BSL0|YKT6_DEBHA | Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YKT6 PE=3 SV=1 | 32 | 178 | 2.0E-08 |
| sp|P51809|VAMP7_HUMAN | Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3 | 45 | 171 | 3.0E-08 |
| sp|Q9JHW5|VAMP7_RAT | Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1 | 45 | 171 | 4.0E-08 |
| sp|O49377|VA711_ARATH | Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=1 SV=2 | 13 | 176 | 4.0E-07 |
| sp|Q2YDJ2|SC22C_BOVIN | Vesicle-trafficking protein SEC22c OS=Bos taurus GN=SEC22C PE=2 SV=1 | 47 | 133 | 7.0E-07 |
| sp|Q9SIQ9|VA712_ARATH | Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1 | 18 | 178 | 8.0E-07 |
| sp|Q9LFP1|VA713_ARATH | Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1 | 13 | 202 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 181 | 203 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|2483 MLCASVDEDQNPSAPLQESKTQVRQVLRRLTRTSAPQASIECGSGHYTIHYLIDSDVIFLCICERSYPRKLAFTY LSDLSREFATSHPPSQTHNPALRPYAFMDFDSFIAKTRTTYADARAAQNLDKLNDELRDVTKVMTKNIEDLLYRG DSLDRMGEMSSRLRDDSKRYRRAAVRINWELLLKQYGPFAGVGFLVLLFVYLRFF* |
| Coding | >Ophun1|2483 ATGCTCTGCGCCTCAGTAGACGAAGACCAAAACCCCTCAGCCCCCCTCCAAGAATCCAAAACCCAAGTCCGACAG GTCCTCCGCCGCCTAACCCGCACGTCCGCGCCCCAAGCCTCCATCGAGTGCGGCTCCGGCCACTACACGATCCAC TACCTCATCGACTCGGACGTCATCTTCCTCTGCATCTGCGAGCGGTCCTACCCGCGCAAGCTGGCCTTCACATAC CTCTCCGACCTGTCCCGCGAGTTCGCCACCAGTCACCCGCCCTCGCAGACGCATAACCCCGCGTTGCGGCCCTAT GCGTTTATGGATTTTGATAGCTTTATTGCCAAGACGAGGACGACGTATGCGGATGCGCGCGCGGCGCAGAACTTG GATAAGCTGAATGATGAGCTGAGGGATGTGACCAAGGTCATGACGAAGAATATCGAGGACTTGCTCTATCGGGGG GATAGTCTGGATCGCATGGGGGAGATGAGTAGTCGGTTGAGGGATGATAGTAAGCGGTATCGGAGGGCGGCAGTG AGGATCAACTGGGAGTTGTTGTTGAAGCAGTACGGGCCCTTTGCTGGGGTTGGCTTTCTGGTGTTGCTGTTTGTC TATCTGCGCTTCTTCTAA |
| Transcript | >Ophun1|2483 ATGCTCTGCGCCTCAGTAGACGAAGACCAAAACCCCTCAGCCCCCCTCCAAGAATCCAAAACCCAAGTCCGACAG GTCCTCCGCCGCCTAACCCGCACGTCCGCGCCCCAAGCCTCCATCGAGTGCGGCTCCGGCCACTACACGATCCAC TACCTCATCGACTCGGACGTCATCTTCCTCTGCATCTGCGAGCGGTCCTACCCGCGCAAGCTGGCCTTCACATAC CTCTCCGACCTGTCCCGCGAGTTCGCCACCAGTCACCCGCCCTCGCAGACGCATAACCCCGCGTTGCGGCCCTAT GCGTTTATGGATTTTGATAGCTTTATTGCCAAGACGAGGACGACGTATGCGGATGCGCGCGCGGCGCAGAACTTG GATAAGCTGAATGATGAGCTGAGGGATGTGACCAAGGTCATGACGAAGAATATCGAGGACTTGCTCTATCGGGGG GATAGTCTGGATCGCATGGGGGAGATGAGTAGTCGGTTGAGGGATGATAGTAAGCGGTATCGGAGGGCGGCAGTG AGGATCAACTGGGAGTTGTTGTTGAAGCAGTACGGGCCCTTTGCTGGGGTTGGCTTTCTGGTGTTGCTGTTTGTC TATCTGCGCTTCTTCTAA |
| Gene | >Ophun1|2483 ATGCTCTGCGCCTCAGTAGACGAAGACCAAAACCCCTCAGCCCCCCTCCAAGAATCCAAAACCCAAGTCCGACAG GTCCTCCGCCGCCTAACCCGCACGTCCGCGCCCCAAGCCTCCATCGAGTGCGGCTCCGGCCACTACACGATCCAC TACCTCATCGACTCGGACGTCATCTTCCTCTGCATCTGCGAGCGGTCCTACCCGCGCAAGCTGGCCTTCACATAC CTCTCCGACCTGTCCCGCGAGTTCGCCACCAGTCACCCGCCCTCGCAGACGCATAACCCCGCGTTGCGGCCCTAT GCGTTTATGGATTTTGATAGCTTTATTGCCAAGACGAGGACGACGTATGCGGATGCGCGCGCGGCGCAGAACTTG GATAAGCTGAATGATGAGCTGAGGGATGTGACCAAGGTCATGACGAAGAATATCGAGGACTTGCTCTATCGGGGG GATAGTCTGGATCGCATGGGGGAGATGAGTAGTCGGTTGAGGGATGATAGTAAGCGGTATCGGAGGGCGGCAGTG AGGATCAACTGGGAGTTGTTGTTGAAGCAGTACGGGCCCTTTGCTGGGGTTGGCTTTCTGGTGTTGCTGTTTGTC TATCTGCGCTTCTTCTAA |