Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|2199
Gene name
LocationContig_2036:473..1049
Strand+
Gene length (bp)576
Transcript length (bp)411
Coding sequence length (bp)411
Protein length (aa) 137

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P36619|PMD1_SCHPO Leptomycin B resistance protein pmd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmd1 PE=3 SV=2 7 115 7.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 30 0.5

Transmembrane Domains

Domain # Start End Length
1 45 67 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|2199
METSKPTPEPKDQPRSEPQPRPQQTASFKDYRRVFSYASKWDLVAYAAGGLASVGAGVTLPLMNVVFGKLVGNAS
DFAPQTEADREHFRQRLSQLSLYMFALFIARFGLDYINKVDPSLSSATSTQQLIIASSVSA*
Coding >Ophun1|2199
ATGGAGACCAGCAAACCCACCCCCGAGCCGAAAGACCAGCCCCGGTCCGAGCCGCAACCCCGTCCGCAACAAACG
GCCTCCTTCAAAGACTACCGACGCGTCTTCAGCTACGCCTCGAAATGGGATCTGGTGGCCTATGCAGCCGGCGGC
CTGGCTTCGGTCGGCGCGGGCGTTACCCTTCCGCTCATGAACGTCGTCTTCGGCAAACTCGTGGGTAACGCGTCC
GACTTTGCGCCGCAGACGGAGGCGGATAGGGAGCATTTCCGACAGCGACTCAGCCAGCTATCCCTTTACATGTTT
GCTCTATTCATCGCCCGCTTTGGCCTCGACTATATCAACAAGGTAGATCCAAGTCTCTCCTCAGCAACCTCGACA
CAGCAGCTTATAATCGCCAGCTCTGTTTCCGCATGA
Transcript >Ophun1|2199
ATGGAGACCAGCAAACCCACCCCCGAGCCGAAAGACCAGCCCCGGTCCGAGCCGCAACCCCGTCCGCAACAAACG
GCCTCCTTCAAAGACTACCGACGCGTCTTCAGCTACGCCTCGAAATGGGATCTGGTGGCCTATGCAGCCGGCGGC
CTGGCTTCGGTCGGCGCGGGCGTTACCCTTCCGCTCATGAACGTCGTCTTCGGCAAACTCGTGGGTAACGCGTCC
GACTTTGCGCCGCAGACGGAGGCGGATAGGGAGCATTTCCGACAGCGACTCAGCCAGCTATCCCTTTACATGTTT
GCTCTATTCATCGCCCGCTTTGGCCTCGACTATATCAACAAGGTAGATCCAAGTCTCTCCTCAGCAACCTCGACA
CAGCAGCTTATAATCGCCAGCTCTGTTTCCGCATGA
Gene >Ophun1|2199
ATGGAGACCAGCAAACCCACCCCCGAGCCGAAAGACCAGCCCCGGTCCGAGCCGCAACCCCGTCCGCAACAAACG
GCCTCCTTCAAAGACTACCGAGTGAGCACCAATCTCTTCGCAGATGCAGAATCACAGCCTGACGACGACAACAGC
GCGTCTTCAGCTACGCCTCGAAATGGGATCTGGTGGCCTATGCAGCCGGCGGCCTGGCTTCGGTCGGCGCGGGCG
TTACCCTTCCGCTCATGAACGTCGTCTTCGGTATGCGCTCTTGTGGTGGTTGTTTGGGTGAGATGCGTTGTTGAT
GGCATTGTGCTTGCAGGCAAACTCGTGGGTAACGCGTCCGACTTTGCGCCGCAGACGGAGGCGGATAGGGAGCAT
TTCCGACAGCGACTCAGCCAGCTATCGTCAGTATCACAGTTGGTCGAGTTGGGCTGAGCTGATGGGCATCGTCGT
AGCCTTTACATGTTTGCTCTATTCATCGCCCGCTTTGGCCTCGACTATATCAACAAGGTAGATCCAAGTCTCTCC
TCAGCAACCTCGACACAGCAGCTTATAATCGCCAGCTCTGTTTCCGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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