© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|2126 |
| Gene name | |
| Location | Contig_20:7150..8792 |
| Strand | - |
| Gene length (bp) | 1642 |
| Transcript length (bp) | 1368 |
| Coding sequence length (bp) | 1368 |
| Protein length (aa) | 456 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 3.1E-09 | 154 | 404 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0006810 | transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0051179 | localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 349 | 371 | 22 |
| 2 | 384 | 406 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|2126 MNDVPNDCFVDSLRNPILLIDRTDEASQPIREASFLTEQDVDSYLAAHSTDYTTRFISLYQRNSWRPLQATRPML SSLAKTHDLGDAFCELVSCFYQRNDDIEEAYSVPLTRSVSGQWIDISYSLRYPEFKEETKQWCIRHSAIYHRFNV DTLQSIFILFSPRPEARAHDLVSNCVRAGEPGLFSLHNAFFSSYLPNWRRYITFCESDFHVISNNVSTADDYLFQ VGDKDLRRLYVLENKFRLVTSMLALTQQALADAIALIGRPPLKPPADAVQVLENNERHCVAYSRSADYLLQCTRS AAQVLTAALSLQNQRVARKQNDRIYMLHSAAEKQNSNMLKLNESAVFITTLTLLYAPASFIASFFGMNFFAMDQP NNRIVATSMIWIYVAATLALTIATVAFYYWLSQHDGVLYLRRISEFPKEAGIKFRNRRSHKQDNDVELQAREGSL ENPSG* |
| Coding | >Ophun1|2126 ATGAACGACGTACCGAACGACTGCTTCGTCGACAGTTTGAGGAATCCTATACTGCTCATTGACCGCACGGACGAA GCCAGCCAGCCCATCCGCGAAGCCAGCTTCCTGACAGAACAGGATGTCGACAGCTATCTCGCCGCCCACAGCACC GACTATACGACCCGCTTCATATCTTTATACCAGCGCAACTCGTGGCGACCGCTGCAGGCGACTCGGCCAATGCTC TCCTCTCTCGCCAAAACGCACGACCTAGGCGACGCCTTCTGCGAGCTAGTCTCGTGCTTCTATCAACGTAACGAC GACATTGAAGAGGCATATTCCGTGCCTCTGACACGCTCTGTCAGTGGGCAATGGATTGACATCTCCTACTCGCTT CGCTATCCCGAGTTCAAGGAAGAAACCAAACAATGGTGTATCCGTCACAGCGCCATCTATCACCGCTTCAACGTC GACACTCTCCAAAGCATATTTATCCTCTTTAGCCCACGACCCGAAGCCCGAGCCCATGACCTCGTCAGCAACTGT GTCCGCGCTGGAGAACCCGGTCTCTTTTCGCTGCACAACGCCTTCTTCTCTTCCTACCTACCCAATTGGAGGAGA TACATCACCTTCTGCGAGAGCGACTTTCACGTTATATCAAACAATGTCTCGACCGCGGACGACTACCTCTTTCAA GTCGGCGATAAAGACCTCAGGCGGTTATATGTCTTGGAAAACAAGTTCCGGCTTGTGACCAGCATGCTGGCCTTG ACGCAACAGGCCCTAGCTGATGCCATAGCTTTGATCGGCCGCCCACCGCTGAAACCGCCAGCCGACGCCGTCCAA GTCCTGGAGAACAACGAGCGCCACTGTGTCGCGTATTCACGCTCAGCCGACTATCTTCTCCAGTGCACACGGTCG GCGGCCCAGGTGCTGACGGCGGCGCTGTCGCTACAGAACCAACGCGTTGCCAGAAAGCAAAACGACAGGATTTAT ATGCTCCATTCTGCTGCTGAGAAGCAGAATAGCAACATGTTGAAGCTCAACGAGTCGGCAGTCTTTATCACTACC CTAACTCTCCTCTACGCGCCCGCCTCCTTCATCGCCTCCTTTTTCGGCATGAACTTCTTCGCCATGGATCAGCCC AACAACCGCATCGTCGCTACTTCTATGATCTGGATCTACGTCGCTGCCACTCTGGCCCTCACAATAGCCACTGTC GCATTCTACTACTGGCTGTCTCAGCACGATGGCGTCTTGTACTTGCGAAGAATATCCGAATTCCCTAAAGAAGCC GGCATCAAATTCCGGAACCGGCGGTCCCACAAGCAGGACAACGATGTAGAGCTCCAGGCACGCGAGGGGAGCTTA GAGAACCCTAGCGGATGA |
| Transcript | >Ophun1|2126 ATGAACGACGTACCGAACGACTGCTTCGTCGACAGTTTGAGGAATCCTATACTGCTCATTGACCGCACGGACGAA GCCAGCCAGCCCATCCGCGAAGCCAGCTTCCTGACAGAACAGGATGTCGACAGCTATCTCGCCGCCCACAGCACC GACTATACGACCCGCTTCATATCTTTATACCAGCGCAACTCGTGGCGACCGCTGCAGGCGACTCGGCCAATGCTC TCCTCTCTCGCCAAAACGCACGACCTAGGCGACGCCTTCTGCGAGCTAGTCTCGTGCTTCTATCAACGTAACGAC GACATTGAAGAGGCATATTCCGTGCCTCTGACACGCTCTGTCAGTGGGCAATGGATTGACATCTCCTACTCGCTT CGCTATCCCGAGTTCAAGGAAGAAACCAAACAATGGTGTATCCGTCACAGCGCCATCTATCACCGCTTCAACGTC GACACTCTCCAAAGCATATTTATCCTCTTTAGCCCACGACCCGAAGCCCGAGCCCATGACCTCGTCAGCAACTGT GTCCGCGCTGGAGAACCCGGTCTCTTTTCGCTGCACAACGCCTTCTTCTCTTCCTACCTACCCAATTGGAGGAGA TACATCACCTTCTGCGAGAGCGACTTTCACGTTATATCAAACAATGTCTCGACCGCGGACGACTACCTCTTTCAA GTCGGCGATAAAGACCTCAGGCGGTTATATGTCTTGGAAAACAAGTTCCGGCTTGTGACCAGCATGCTGGCCTTG ACGCAACAGGCCCTAGCTGATGCCATAGCTTTGATCGGCCGCCCACCGCTGAAACCGCCAGCCGACGCCGTCCAA GTCCTGGAGAACAACGAGCGCCACTGTGTCGCGTATTCACGCTCAGCCGACTATCTTCTCCAGTGCACACGGTCG GCGGCCCAGGTGCTGACGGCGGCGCTGTCGCTACAGAACCAACGCGTTGCCAGAAAGCAAAACGACAGGATTTAT ATGCTCCATTCTGCTGCTGAGAAGCAGAATAGCAACATGTTGAAGCTCAACGAGTCGGCAGTCTTTATCACTACC CTAACTCTCCTCTACGCGCCCGCCTCCTTCATCGCCTCCTTTTTCGGCATGAACTTCTTCGCCATGGATCAGCCC AACAACCGCATCGTCGCTACTTCTATGATCTGGATCTACGTCGCTGCCACTCTGGCCCTCACAATAGCCACTGTC GCATTCTACTACTGGCTGTCTCAGCACGATGGCGTCTTGTACTTGCGAAGAATATCCGAATTCCCTAAAGAAGCC GGCATCAAATTCCGGAACCGGCGGTCCCACAAGCAGGACAACGATGTAGAGCTCCAGGCACGCGAGGGGAGCTTA GAGAACCCTAGCGGATGA |
| Gene | >Ophun1|2126 ATGAACGACGTACCGAACGACTGCTTCGTCGACAGTTTGAGGAATCCTATACTGCTCATTGACCGCACGGACGAA GCCAGCCAGCCCATCCGCGAAGCCAGCTTCCTGACAGAACAGGATGTCGACAGCTATCTCGCCGCCCACAGCACC GACTATACGACCCGCTTCATGTGCGACGACCTGTACTTCTTGCAAACCTTGACATGACACTTACTTACGCGCGTC AGATCTTTATACCAGCGCAACTCGTGGCGACCGCTGCAGGCGACTCGGCCAATGCTCTCCTCTCTCGCCAAAACG CACGACCTAGGCGACGCCTTCTGCGAGCTAGTCTCGTGCTTCTATCAACGTAACGACGACATTGAAGAGGCATAT TCCGTGCCTCTGACACGCTCTGTCAGTGGGCAATGGATTGGTACGTTCTCCTCAATCTCCAGGGCTCCAGAGAGA GCGGCTAACAGGTTAGAACCCCAGACATCTCCTACTCGCTTCGCTATCCCGAGTTCAAGGAAGAAACCAAACAAT GGTGTATCCGTCACAGCGCCATCTATCACCGCTTCAACGTCGACACTCTCCAAAGCATATTTATCCTCTTTAGCC CACGACCCGAAGCCCGAGCCCATGACCTCGTCAGCAACTGTGTCCGCGCTGGAGAACCCGGTCTCTTTTCGCTGC ACAACGCCTTCTTCTCTTCCTACCTACCCAATTGGAGGAGATACATCACCTTCTGCGAGAGCGACTTTCACGTTA TAGTAAGTGATCAACAGATGTGATCACTTTCTCTCCCTGCATCGGCCTGACTGATAGTTTGTCCATCTCAATAGT CAAACAATGTCTCGACCGCGGACGACTACCTCTTTCAAGTCGGCGATAAAGACCTCAGGCGGTTATATGTCTTGG AAAACAAGTTCCGGCTTGTGACCAGCATGCTGGCCTTGACGCAACAGGCCCTAGCTGATGCCATAGCTTTGATCG GCCGCCCACCGCTGAAACCGCCAGCCGACGCCGTCCAAGTCCTGGAGAACAACGAGCGCCACTGTGTCGCGTATT CACGCTCAGCCGACTATCTTCTCCAGTGCACACGGTCGGCGGCCCAGGTGCTGACGGCGGCGCTGTCGCTACAGA ACCAACGCGTTGCCAGAAAGCAAAACGACAGGATTTATATGCTCCATTCTGCTGCTGAGAAGCAGAATAGCAACA TGTTGAAGCTCAACGAGTCGGCAGTCTTTATCACTACCCTAACTCTCCTCTACGCGCCCGCCTCCTTCATCGCCG TAAGTTGCTTGTCGTTGTTCTACTTTGTACGACACAAACAACTCTTCTTTACACCTGCCATCCTGCTAACACTCT TCTCATGCAGTCCTTTTTCGGCATGAACTTCTTCGCCATGGATCAGCCCAACAACCGCATCGTCGCTACTTCTAT GATCTGGATCTACGTCGCTGCCACTCTGGCCCTCACAATAGCCACTGTCGCATTCTACTACTGGCTGTCTCAGCA CGATGGCGTCTTGTACTTGCGAAGAATATCCGAATTCCCTAAAGAAGCCGGCATCAAATTCCGGAACCGGCGGTC CCACAAGCAGGACAACGATGTAGAGCTCCAGGCACGCGAGGGGAGCTTAGAGAACCCTAGCGGATGA |