Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophun1\|2042
Gene name
Location	Contig_195:18368..21080
Strand	+
Gene length (bp)	2712
Transcript length (bp)	2667
Coding sequence length (bp)	2667
Protein length (aa)	889

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03835	Rad4	Rad4 transglutaminase-like domain	8.2E-28	413	572
PF10405	BHD_3	Rad4 beta-hairpin domain 3	2.6E-26	715	786
PF10403	BHD_1	Rad4 beta-hairpin domain 1	3.0E-20	585	642
PF10404	BHD_2	Rad4 beta-hairpin domain 2	3.5E-15	646	708

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P87235\|RHP42_SCHPO	DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1	434	830	8.0E-75
sp\|Q10445\|RHP41_SCHPO	DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1	88	830	4.0E-60
sp\|Q24595\|XPC_DROME	DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster GN=Xpc PE=1 SV=2	432	830	1.0E-32
sp\|Q01831\|XPC_HUMAN	DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4	444	830	3.0E-30
sp\|P14736\|RAD4_YEAST	DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3	438	846	2.0E-28

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P87235\|RHP42_SCHPO	DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1	434	830	8.0E-75
sp\|Q10445\|RHP41_SCHPO	DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1	88	830	4.0E-60
sp\|Q24595\|XPC_DROME	DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster GN=Xpc PE=1 SV=2	432	830	1.0E-32
sp\|Q01831\|XPC_HUMAN	DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4	444	830	3.0E-30
sp\|P14736\|RAD4_YEAST	DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3	438	846	2.0E-28
sp\|P51612\|XPC_MOUSE	DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2	444	830	4.0E-27
sp\|Q8W489\|RAD4_ARATH	DNA repair protein RAD4 OS=Arabidopsis thaliana GN=RAD4 PE=1 SV=1	438	839	5.0E-20
sp\|P87235\|RHP42_SCHPO	DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1	139	358	1.0E-12
sp\|Q06665\|RAD34_YEAST	DNA repair protein RAD34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD34 PE=1 SV=1	429	832	3.0E-12

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GO

GO Term	Description	Terminal node
GO:0003677	DNA binding	Yes
GO:0097159	organic cyclic compound binding	No
GO:0003674	molecular_function	No
GO:0003676	nucleic acid binding	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 37	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophun1\|2042 MSPRVLRKRPRESQETKGKGKAPPSTPEPARKKPKTSLYHDLDASVTPKSGKESVLKGIVEDSDSSLTSLSELDA ATVAGAQSKDDDDDDDDDDDDDDIAFEDVAVPSDAAEEAPVVSGDLELTLQKDTRISLTNPYGNKKGPSKRERSV RNATHCLHVMSLLFHNAVRSSWLCDQEVQATMISHLPRSIWAEFDRWKRSSGLSTSVEPCETPKKNKDSPERASR NWSLAAAKLEEGAVDMSRGDPLFRLMQSLAAWWKQRFRITAHGLRKRGYMALERLDRLTKAFEAAQGEGALFGER IPGLEAFRERARACQGSRDVGAQLFTALLRGLGLEARMVANLPCLGFGWNKLEDADPEKEEDDKLASATAEKPAA KKSSRAGKQTKAQPAVKARSSRRAIPKEALRAQGSDSAESDDEKLYKQYMKATKPTGKLDNDLEYPHYWSEVLSP VTNKYVAVDALKGTIATNRDHFETFEPRGAKADRARQIMAYIVGYSPDGTAKDVTVRYLKRRVLPGRTRGARMPP EKVAVYDSRGKVKRHEQLDWFKTAMSGYRRGGKLHPLTDADHDEDATDLKPAEAVKKEVKEGEETVQYYKQSSEF VLERHLKREEALKEGAVPVKVFRNKAKGSKGEEEDVFLRADVVQVKSAETWHKQGRAPRAGEQPLKRVPYRAATL NRRREIVEAEAATGEKVLQGLFSLEQTDWIIPPPIKDGVIPKNEYGNIDLFAEHMCPEGAVHVPYRGAVRVCKRL EVDFAEAVVGFEFGNRMAVPVISGVVVAVEHHERVMQELATDEAERARREDEKRRKAALGKWRKFIMGLRIASRI RRDYGEVEERRDEVLPGGFLPEGFEEEEEGGEGGERSGFFPVGGDDEEEEEEDGDGVLTVEDA*
Coding	>Ophun1\|2042 ATGAGTCCTCGGGTTCTGCGTAAGCGTCCGCGCGAATCGCAAGAAACCAAGGGTAAAGGCAAAGCACCACCTTCG ACTCCGGAGCCGGCTCGCAAGAAGCCCAAGACGAGCCTATACCACGACCTCGACGCCTCCGTCACGCCCAAGTCG GGCAAAGAATCTGTGTTGAAGGGTATTGTCGAAGATAGCGACAGCTCATTGACATCTCTGTCGGAGTTGGACGCG GCGACTGTCGCTGGAGCTCAGTCGAAAGACGATGACGATGACGATGACGATGACGATGACGATGACGACATCGCC TTCGAGGACGTGGCGGTTCCTTCTGACGCTGCAGAAGAGGCTCCCGTCGTATCAGGAGACCTCGAGCTGACGCTA CAAAAAGACACGCGCATCTCGCTCACCAACCCCTATGGCAACAAAAAGGGCCCTTCCAAGCGAGAACGCAGCGTA CGCAACGCAACACACTGCCTCCACGTCATGTCGCTACTCTTCCACAACGCCGTCCGCAGCTCGTGGCTCTGCGAC CAAGAGGTTCAAGCCACGATGATATCCCACTTGCCCAGGAGCATCTGGGCCGAATTCGACCGCTGGAAACGCAGC TCTGGTCTGAGCACGTCAGTCGAACCCTGTGAGACGCCGAAGAAGAACAAAGACTCTCCTGAACGTGCTTCGCGC AATTGGAGCTTGGCGGCCGCGAAGCTGGAAGAGGGCGCAGTGGATATGAGCCGCGGAGACCCCCTCTTCCGTCTA ATGCAGTCGCTGGCAGCTTGGTGGAAGCAGCGCTTTCGCATCACGGCTCACGGTCTGAGAAAACGGGGCTATATG GCGTTGGAGCGGTTGGATCGACTGACCAAGGCCTTTGAGGCTGCGCAGGGGGAGGGTGCCTTGTTTGGCGAGAGG ATACCGGGTCTCGAGGCGTTTCGCGAACGTGCCCGTGCCTGTCAGGGGAGCCGTGATGTCGGGGCCCAACTGTTC ACTGCGCTGCTCAGGGGGCTGGGACTTGAAGCTCGGATGGTGGCCAACCTTCCGTGCCTGGGCTTTGGATGGAAT AAGCTCGAGGATGCGGATCCTGAAAAGGAGGAAGATGACAAGCTTGCGTCTGCGACTGCTGAGAAGCCAGCGGCG AAGAAGAGTTCGCGCGCTGGCAAGCAGACGAAGGCTCAGCCGGCTGTCAAGGCTCGGAGCTCGCGCCGTGCAATT CCGAAGGAGGCATTGCGAGCTCAGGGCAGCGATTCCGCCGAGTCGGATGACGAGAAGCTGTACAAGCAGTACATG AAAGCGACAAAACCGACCGGAAAGCTTGACAACGATCTCGAGTACCCTCACTACTGGTCAGAAGTGCTGTCACCC GTCACCAACAAATACGTTGCTGTCGATGCTTTAAAGGGCACAATCGCCACGAACCGAGACCACTTCGAGACGTTC GAGCCCCGGGGCGCCAAGGCCGACAGGGCGAGACAGATCATGGCCTACATCGTCGGATACTCGCCAGACGGCACA GCCAAAGACGTGACGGTGCGCTATCTCAAGCGACGCGTTCTCCCTGGGCGGACTAGAGGCGCGAGGATGCCGCCG GAAAAGGTTGCCGTCTACGACAGCCGCGGCAAGGTGAAGCGGCACGAGCAGCTGGACTGGTTCAAGACGGCCATG TCGGGATACAGACGAGGCGGTAAACTGCATCCTCTCACAGACGCGGACCACGATGAGGATGCGACGGACCTTAAG CCGGCCGAGGCAGTCAAGAAGGAGGTCAAAGAGGGCGAGGAGACGGTTCAATACTACAAGCAATCGAGCGAGTTC GTGTTGGAGAGACACCTCAAGCGGGAAGAGGCTCTCAAAGAGGGAGCGGTACCTGTCAAGGTGTTTAGAAACAAG GCAAAAGGCAGCAAAGGCGAGGAAGAAGACGTCTTCCTACGCGCCGACGTCGTTCAGGTAAAGAGTGCCGAAACG TGGCACAAACAGGGGAGGGCACCAAGGGCGGGCGAGCAGCCGCTGAAGAGAGTGCCTTACCGGGCCGCCACGCTC AACCGGCGGAGGGAGATTGTCGAGGCGGAGGCGGCGACGGGGGAAAAGGTGCTTCAGGGGCTGTTTAGCCTGGAG CAGACGGACTGGATTATCCCGCCGCCCATCAAAGACGGCGTGATTCCCAAGAATGAATACGGGAACATTGATCTC TTTGCGGAGCACATGTGCCCTGAAGGCGCCGTACATGTCCCTTACAGGGGCGCGGTCCGGGTCTGCAAGCGACTC GAGGTAGACTTTGCCGAGGCGGTGGTAGGCTTCGAGTTCGGGAACCGGATGGCTGTGCCGGTGATATCAGGCGTC GTCGTGGCAGTTGAGCACCACGAGCGCGTCATGCAAGAGCTAGCCACCGACGAGGCAGAGAGGGCACGACGCGAA GACGAGAAGCGACGCAAGGCGGCGCTCGGGAAGTGGCGGAAGTTCATCATGGGCTTGCGTATCGCGAGCCGGATA AGACGCGATTATGGGGAGGTGGAGGAGCGGCGTGATGAGGTCTTGCCGGGGGGGTTCTTGCCGGAGGGGTTTGAG GAGGAGGAGGAGGGGGGTGAGGGGGGTGAGCGGTCTGGGTTCTTTCCGGTTGGTGGTGATGATGAGGAGGAGGAG GAGGAGGATGGGGATGGGGTTCTGACGGTGGAAGATGCTTGA
Transcript	>Ophun1\|2042 ATGAGTCCTCGGGTTCTGCGTAAGCGTCCGCGCGAATCGCAAGAAACCAAGGGTAAAGGCAAAGCACCACCTTCG ACTCCGGAGCCGGCTCGCAAGAAGCCCAAGACGAGCCTATACCACGACCTCGACGCCTCCGTCACGCCCAAGTCG GGCAAAGAATCTGTGTTGAAGGGTATTGTCGAAGATAGCGACAGCTCATTGACATCTCTGTCGGAGTTGGACGCG GCGACTGTCGCTGGAGCTCAGTCGAAAGACGATGACGATGACGATGACGATGACGATGACGATGACGACATCGCC TTCGAGGACGTGGCGGTTCCTTCTGACGCTGCAGAAGAGGCTCCCGTCGTATCAGGAGACCTCGAGCTGACGCTA CAAAAAGACACGCGCATCTCGCTCACCAACCCCTATGGCAACAAAAAGGGCCCTTCCAAGCGAGAACGCAGCGTA CGCAACGCAACACACTGCCTCCACGTCATGTCGCTACTCTTCCACAACGCCGTCCGCAGCTCGTGGCTCTGCGAC CAAGAGGTTCAAGCCACGATGATATCCCACTTGCCCAGGAGCATCTGGGCCGAATTCGACCGCTGGAAACGCAGC TCTGGTCTGAGCACGTCAGTCGAACCCTGTGAGACGCCGAAGAAGAACAAAGACTCTCCTGAACGTGCTTCGCGC AATTGGAGCTTGGCGGCCGCGAAGCTGGAAGAGGGCGCAGTGGATATGAGCCGCGGAGACCCCCTCTTCCGTCTA ATGCAGTCGCTGGCAGCTTGGTGGAAGCAGCGCTTTCGCATCACGGCTCACGGTCTGAGAAAACGGGGCTATATG GCGTTGGAGCGGTTGGATCGACTGACCAAGGCCTTTGAGGCTGCGCAGGGGGAGGGTGCCTTGTTTGGCGAGAGG ATACCGGGTCTCGAGGCGTTTCGCGAACGTGCCCGTGCCTGTCAGGGGAGCCGTGATGTCGGGGCCCAACTGTTC ACTGCGCTGCTCAGGGGGCTGGGACTTGAAGCTCGGATGGTGGCCAACCTTCCGTGCCTGGGCTTTGGATGGAAT AAGCTCGAGGATGCGGATCCTGAAAAGGAGGAAGATGACAAGCTTGCGTCTGCGACTGCTGAGAAGCCAGCGGCG AAGAAGAGTTCGCGCGCTGGCAAGCAGACGAAGGCTCAGCCGGCTGTCAAGGCTCGGAGCTCGCGCCGTGCAATT CCGAAGGAGGCATTGCGAGCTCAGGGCAGCGATTCCGCCGAGTCGGATGACGAGAAGCTGTACAAGCAGTACATG AAAGCGACAAAACCGACCGGAAAGCTTGACAACGATCTCGAGTACCCTCACTACTGGTCAGAAGTGCTGTCACCC GTCACCAACAAATACGTTGCTGTCGATGCTTTAAAGGGCACAATCGCCACGAACCGAGACCACTTCGAGACGTTC GAGCCCCGGGGCGCCAAGGCCGACAGGGCGAGACAGATCATGGCCTACATCGTCGGATACTCGCCAGACGGCACA GCCAAAGACGTGACGGTGCGCTATCTCAAGCGACGCGTTCTCCCTGGGCGGACTAGAGGCGCGAGGATGCCGCCG GAAAAGGTTGCCGTCTACGACAGCCGCGGCAAGGTGAAGCGGCACGAGCAGCTGGACTGGTTCAAGACGGCCATG TCGGGATACAGACGAGGCGGTAAACTGCATCCTCTCACAGACGCGGACCACGATGAGGATGCGACGGACCTTAAG CCGGCCGAGGCAGTCAAGAAGGAGGTCAAAGAGGGCGAGGAGACGGTTCAATACTACAAGCAATCGAGCGAGTTC GTGTTGGAGAGACACCTCAAGCGGGAAGAGGCTCTCAAAGAGGGAGCGGTACCTGTCAAGGTGTTTAGAAACAAG GCAAAAGGCAGCAAAGGCGAGGAAGAAGACGTCTTCCTACGCGCCGACGTCGTTCAGGTAAAGAGTGCCGAAACG TGGCACAAACAGGGGAGGGCACCAAGGGCGGGCGAGCAGCCGCTGAAGAGAGTGCCTTACCGGGCCGCCACGCTC AACCGGCGGAGGGAGATTGTCGAGGCGGAGGCGGCGACGGGGGAAAAGGTGCTTCAGGGGCTGTTTAGCCTGGAG CAGACGGACTGGATTATCCCGCCGCCCATCAAAGACGGCGTGATTCCCAAGAATGAATACGGGAACATTGATCTC TTTGCGGAGCACATGTGCCCTGAAGGCGCCGTACATGTCCCTTACAGGGGCGCGGTCCGGGTCTGCAAGCGACTC GAGGTAGACTTTGCCGAGGCGGTGGTAGGCTTCGAGTTCGGGAACCGGATGGCTGTGCCGGTGATATCAGGCGTC GTCGTGGCAGTTGAGCACCACGAGCGCGTCATGCAAGAGCTAGCCACCGACGAGGCAGAGAGGGCACGACGCGAA GACGAGAAGCGACGCAAGGCGGCGCTCGGGAAGTGGCGGAAGTTCATCATGGGCTTGCGTATCGCGAGCCGGATA AGACGCGATTATGGGGAGGTGGAGGAGCGGCGTGATGAGGTCTTGCCGGGGGGGTTCTTGCCGGAGGGGTTTGAG GAGGAGGAGGAGGGGGGTGAGGGGGGTGAGCGGTCTGGGTTCTTTCCGGTTGGTGGTGATGATGAGGAGGAGGAG GAGGAGGATGGGGATGGGGTTCTGACGGTGGAAGATGCTTGA
Gene	>Ophun1\|2042 ATGAGTCCTCGGGTTCTGCGTAAGCGTCCGCGCGAATCGCAAGAAACCAAGGGTAAAGGCAAAGCACCACCTTCG ACTCCGGAGCCGGCTCGCAAGAAGCCCAAGACGAGCCTATACCACGACCTCGACGCCTCCGTCACGCCCAAGTCG GGCAAAGAATCTGTGTTGAAGGGTATTGTCGAAGATAGCGACAGCTCATTGACATCTCTGTCGGAGTTGGACGCG GCGACTGTCGCTGGAGCTCAGTCGAAAGACGATGACGATGACGATGACGATGACGATGACGATGACGACATCGCC TTCGAGGACGTGGCGGTTCCTTCTGACGCTGCAGAAGAGGCTCCCGTCGTATCAGGAGACCTCGAGCTGACGCTA CAAAAAGACACGCGCATCTCGCTCACCAACCCCTATGGCAACAAAAAGGGCCCTTCCAAGCGAGAACGCAGCGTA CGCAACGCAACACACTGCCTCCACGTCATGTCGCTACTCTTCCACAACGCCGTCCGCAGCTCGTGGCTCTGCGAC CAAGAGGTTCAAGCCACGATGATATCCCACTTGCCCAGGAGCATCTGGGCCGAATTCGACCGCTGGAAACGCAGC TCTGGTCTGAGCACGTCAGTCGAACCCTGTGAGACGCCGAAGAAGAACAAAGACTCTCCTGAACGTGCTTCGCGC AATTGGAGCTTGGCGGCCGCGAAGCTGGAAGAGGGCGCAGTGGATATGAGCCGCGGAGACCCCCTCTTCCGTCTA ATGCAGTCGCTGGCAGCTTGGTGGAAGCAGCGCTTTCGCATCACGGCTCACGGTCTGAGAAAACGGGGCTATATG GCGTTGGAGCGGTTGGATCGACTGACCAAGGCCTTTGAGGCTGCGCAGGGGGAGGGTGCCTTGTTTGGCGAGAGG ATACCGGGTCTCGAGGCGTTTCGCGAACGTGCCCGTGCCTGTCAGGGGAGCCGTGATGTCGGGGCCCAACTGTTC ACTGCGCTGCTCAGGGGGCTGGGACTTGAAGCTCGGATGGTGGCCAACCTTCCGTGCCTGGGCTTTGGATGGAAT AAGCTCGAGGATGCGGATCCTGAAAAGGAGGAAGATGACAAGCTTGCGTCTGCGACTGCTGAGAAGCCAGCGGCG AAGAAGAGTTCGCGCGCTGGCAAGCAGACGAAGGCTCAGCCGGCTGTCAAGGCTCGGAGCTCGCGCCGTGCAATT CCGAAGGAGGCATTGCGAGCTCAGGGCAGCGATTCCGCCGAGTCGGATGACGAGAAGCTGTACAAGCAGTACATG AAAGCGACAAAACCGACCGGAAAGCTTGACAACGATCTCGAGTACCCTCACTACTGGTCAGAAGTGCTGTCACCC GTCACCAACAAATACGTTGCTGTCGATGCTTTAAAGGGCACAATCGCCACGAACCGAGACCACTTCGAGACGTTC GAGCCCCGGGGCGCCAAGGCCGACAGGGCGAGACAGATCATGGCCTACATCGTCGGATACTCGCCAGACGGCACA GCCAAAGACGTGACGGTGCGCTATCTCAAGCGACGCGTTCTCCCTGGGCGGACTAGAGGCGCGAGGATGCCGCCG GAAAAGGTTGCCGTCTACGACAGCCGCGGCAAGGTGAAGCGGCACGAGCAGCTGGACTGGTTCAAGACGGCCATG TCGGGATACAGACGAGGCGGTAAACTGCATCCTCTCACAGACGCGGACCACGATGAGGATGCGACGGACCTTAAG CCGGCCGAGGCAGTCAAGAAGGAGGTCAAAGAGGGCGAGGAGACGGTTCAATACTACAAGCAATCGAGCGAGTTC GTGTTGGAGAGACACCTCAAGCGGGAAGAGGCTCTCAAAGAGGGAGCGGTACCTGTCAAGGTGTTTAGAAACAAG GCAAAAGGCAGCAAAGGCGAGGAAGAAGACGTCTTCCTACGCGCCGACGTCGTTCAGGTAAAGAGTGCCGAAACG TGGCACAAACAGGGGAGGGCACCAAGGGCGGGCGAGCAGCCGCTGAAGAGAGTGCCTTACCGGGCCGCCACGCTC AACCGGCGGAGGGAGATTGTCGAGGCGGAGGCGGCGACGGGGGAAAAGGTGCTTCAGGGGCTGTTTAGCCTGGAG CAGACGGACTGGATTATCCCGCCGCCCATCAAAGACGGCGTGATTCCCAAGAATGAATACGGGTAAGGCACCTCT TCTGCTGTCTGAGCTGGCTGACGCGAGATTAGGAACATTGATCTCTTTGCGGAGCACATGTGCCCTGAAGGCGCC GTACATGTCCCTTACAGGGGCGCGGTCCGGGTCTGCAAGCGACTCGAGGTAGACTTTGCCGAGGCGGTGGTAGGC TTCGAGTTCGGGAACCGGATGGCTGTGCCGGTGATATCAGGCGTCGTCGTGGCAGTTGAGCACCACGAGCGCGTC ATGCAAGAGCTAGCCACCGACGAGGCAGAGAGGGCACGACGCGAAGACGAGAAGCGACGCAAGGCGGCGCTCGGG AAGTGGCGGAAGTTCATCATGGGCTTGCGTATCGCGAGCCGGATAAGACGCGATTATGGGGAGGTGGAGGAGCGG CGTGATGAGGTCTTGCCGGGGGGGTTCTTGCCGGAGGGGTTTGAGGAGGAGGAGGAGGGGGGTGAGGGGGGTGAG CGGTCTGGGTTCTTTCCGGTTGGTGGTGATGATGAGGAGGAGGAGGAGGAGGATGGGGATGGGGTTCTGACGGTG GAAGATGCTTGA

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