Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophun1\|2031
Gene name
Location	Contig_1940:257..1023
Strand	+
Gene length (bp)	766
Transcript length (bp)	720
Coding sequence length (bp)	720
Protein length (aa)	240

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01168	Ala_racemase_N	Alanine racemase, N-terminal domain	9.8E-12	13	188

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9US35\|DSD1_SCHPO	D-serine dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.06 PE=3 SV=1	3	184	3.0E-25
sp\|P53095\|DSD1_YEAST	D-serine dehydratase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DSD1 PE=1 SV=2	13	217	4.0E-16

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophun1\|2031 MRLQVGPSGPVRIVVSTLAEAEFLLPALLDLGRSDRPVNILYGLPLPRSAIPRLSALSHALGPRSISVLVDDPAQ VPLIQTLASQAVDAPLVFIKIDMGGRRAGVTVEGERMAELVAALRAAKGIVLAGLYSHAGHSYAGRSRGDALRML GEEIGALGRGAERVREGFGDELGLVLSVGASPTALAARGLADDVNDADDDDDDMAAEKSTLTKLASTPSSTSNNS PPEASTRPASPGPT*
Coding	>Ophun1\|2031 ATGCGCCTCCAGGTCGGACCCTCCGGCCCCGTCCGTATCGTCGTCTCCACCCTCGCCGAAGCCGAGTTCCTCCTC CCGGCCCTCCTCGACCTCGGCCGCTCCGACCGGCCGGTGAATATCCTCTACGGCCTCCCGCTCCCCCGCTCGGCA ATCCCCCGTCTGTCCGCCCTCTCACACGCCCTCGGCCCTCGCTCCATCTCCGTCCTCGTCGACGACCCAGCCCAA GTGCCCCTCATCCAGACCCTCGCCTCCCAAGCCGTCGACGCACCCCTCGTCTTCATCAAGATCGACATGGGAGGA CGGAGAGCGGGCGTGACGGTCGAGGGGGAGCGCATGGCTGAGCTGGTTGCTGCGCTGAGGGCTGCCAAGGGGATC GTGCTGGCGGGCTTGTACTCGCATGCTGGGCATTCGTATGCGGGGAGGTCGAGGGGGGATGCGCTGAGGATGCTG GGTGAGGAGATTGGGGCGTTGGGCAGGGGGGCGGAGAGGGTTAGGGAGGGGTTTGGTGATGAGTTGGGGCTTGTG CTTTCTGTTGGGGCTTCGCCTACGGCTTTGGCGGCGAGGGGGTTGGCGGATGACGTCAATGACGCCGATGACGAT GACGATGACATGGCAGCCGAAAAGTCGACACTTACAAAACTCGCGTCTACCCCCTCCTCGACCTCCAACAACTCT CCGCCCGAAGCATCCACCCGTCCAGCCTCTCCTGGCCCGACCTAG
Transcript	>Ophun1\|2031 ATGCGCCTCCAGGTCGGACCCTCCGGCCCCGTCCGTATCGTCGTCTCCACCCTCGCCGAAGCCGAGTTCCTCCTC CCGGCCCTCCTCGACCTCGGCCGCTCCGACCGGCCGGTGAATATCCTCTACGGCCTCCCGCTCCCCCGCTCGGCA ATCCCCCGTCTGTCCGCCCTCTCACACGCCCTCGGCCCTCGCTCCATCTCCGTCCTCGTCGACGACCCAGCCCAA GTGCCCCTCATCCAGACCCTCGCCTCCCAAGCCGTCGACGCACCCCTCGTCTTCATCAAGATCGACATGGGAGGA CGGAGAGCGGGCGTGACGGTCGAGGGGGAGCGCATGGCTGAGCTGGTTGCTGCGCTGAGGGCTGCCAAGGGGATC GTGCTGGCGGGCTTGTACTCGCATGCTGGGCATTCGTATGCGGGGAGGTCGAGGGGGGATGCGCTGAGGATGCTG GGTGAGGAGATTGGGGCGTTGGGCAGGGGGGCGGAGAGGGTTAGGGAGGGGTTTGGTGATGAGTTGGGGCTTGTG CTTTCTGTTGGGGCTTCGCCTACGGCTTTGGCGGCGAGGGGGTTGGCGGATGACGTCAATGACGCCGATGACGAT GACGATGACATGGCAGCCGAAAAGTCGACACTTACAAAACTCGCGTCTACCCCCTCCTCGACCTCCAACAACTCT CCGCCCGAAGCATCCACCCGTCCAGCCTCTCCTGGCCCGACCTAG
Gene	>Ophun1\|2031 ATGCGCCTCCAGGTCGGACCCTCCGGCCCCGTCCGTATCGTCGTCTCCACCCTCGCCGAAGCCGAGTTCCTCCTC CCGGCCCTCCTCGACCTCGGCCGCTCCGACCGGCCGGTGAATATCCTCTACGGCCTCCCGCTCCCCCGCTCGGCA ATCCCCCGTCTGTCCGCCCTCTCACACGCCCTCGGCCCTCGCTCCATCTCCGTCCTCGTCGACGACCCAGCCCAA GTGCCCCTCATCCAGACCCTCGCCTCCCAAGCCGTCGACGCACCCCTCGTCTTCATCAAGATCGACATGGGAGGA CGGAGAGCGGGCGTGACGGTCGAGGGGGAGCGCATGGCTGAGCTGGTTGCTGCGCTGAGGGCTGCCAAGGGGATC GTGCTGGCGGGCTTGTACTCGCATGCTGGGCATTCGTATGCGGGGAGGTCGAGGGGGGATGCGCTGAGGATGCTG GGTGAGGAGATTGGGGCGTTGGGCAGGGGGGCGGAGAGGGTTAGGGAGGGGTTTGGTGATGAGTTGGGGCTTGTG CTTTCTGTTGGGGCTTCGCCTACGGCTTTGGCGGCGAGGGGGTTGGCGGATGACGTCAATGACGCCGATGACGAT GACGATGACATGGCAGCCGAAAAGTCGACACTTACAAAACTCGTCTCCTCGATGAAAACGCGGAACCTCAGTATA GAACTCCACGCAGGCGTCTACCCCCTCCTCGACCTCCAACAACTCTCCGCCCGAAGCATCCACCCGTCCAGCCTC TCCTGGCCCGACCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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