© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|2026 |
| Gene name | |
| Location | Contig_194:7975..9490 |
| Strand | - |
| Gene length (bp) | 1515 |
| Transcript length (bp) | 1401 |
| Coding sequence length (bp) | 1401 |
| Protein length (aa) | 467 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11911 | DUF3429 | Protein of unknown function (DUF3429) | 4.0E-45 | 97 | 261 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0C6U3|R1A_CVHN1 | Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) GN=1a PE=1 SV=1 | 319 | 460 | 3.0E-06 |
| sp|P0C6X2|R1AB_CVHN1 | Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) GN=rep PE=3 SV=1 | 319 | 460 | 3.0E-06 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 102 | 124 | 22 |
| 2 | 157 | 179 | 22 |
| 3 | 192 | 214 | 22 |
| 4 | 243 | 262 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 2094 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|2026 MRAPFQSQLVVSSRARSQLRFASSDSKTPPPRNSGEQLQKPVAEKLEVRPDKVSDRSSVRTIFEKSPPSAPKKDA DLGRELKHDIAVFRDTFRLSDVPQESRILGLAGTLPYVATSLSTLFLAWDLNRDIPTGNSIFDPIFIDHETAQYL LNLIEPLQLGYGAVIISFLGAIHWGLEYAEKQPSRSRTRFRYGIGVAASVVAWPTVLMPIEHALTAQFFAFVALY FADSRASSRGWAPYWYNTYRFLLTAIVGLAILVSLVGRANIGVQGRLSSSGLTSSMTTPGIADRETDWVKLEEEE KARIKKEEEEKAKKRKQKEAAERKKGGKKGGKKKDDQDKAKGNAAGTKDEEEADNDGEEEEDSEDGEKGEEGEDG EDGENDDDGEKEDDNNEEEDGEDDKGDEDDEKKAEGTNSKDNNGKDDEAKKDSKKKDSKAKDAKKQNNSQDDADK DDEADADSKTKAKKKR* |
| Coding | >Ophun1|2026 ATGCGTGCTCCTTTCCAATCACAGCTCGTCGTGTCTTCGCGAGCACGTTCCCAGCTCCGTTTCGCCAGCAGCGAC TCCAAGACGCCTCCTCCGCGGAACAGCGGCGAGCAGCTGCAGAAACCGGTGGCCGAGAAGCTCGAAGTACGACCC GACAAGGTCTCGGATCGGAGCTCCGTACGGACCATCTTTGAAAAGTCTCCGCCGTCTGCCCCCAAGAAGGACGCA GATCTGGGCCGCGAACTGAAGCATGACATCGCAGTCTTTCGCGACACCTTTCGCCTCTCTGACGTGCCGCAAGAG TCGCGCATCCTCGGTCTCGCCGGCACGCTTCCTTATGTCGCGACCTCGCTCTCGACTCTCTTCTTGGCCTGGGAT CTGAACAGGGATATACCGACGGGCAACTCGATCTTTGACCCCATCTTTATCGACCACGAGACGGCCCAGTATCTC CTCAATCTCATTGAGCCGCTACAGCTTGGATACGGAGCCGTCATCATCTCCTTTCTCGGTGCAATCCACTGGGGA CTCGAGTATGCTGAGAAGCAGCCTTCGCGCTCGCGGACGCGATTCCGCTACGGCATCGGCGTCGCCGCCTCCGTC GTAGCCTGGCCAACCGTCCTCATGCCCATCGAGCACGCTCTGACGGCCCAATTCTTTGCTTTCGTCGCCCTTTAC TTTGCCGACTCGAGGGCGTCGTCGCGAGGATGGGCTCCCTATTGGTACAACACGTACCGCTTCCTCCTCACGGCC ATCGTCGGTCTCGCCATCCTCGTGTCTCTGGTGGGCAGGGCCAATATCGGCGTCCAGGGAAGGCTCAGCTCTTCG GGCCTTACCTCGAGCATGACCACCCCGGGCATCGCCGACCGCGAGACTGACTGGGTTAAGCTGGAGGAAGAGGAG AAAGCCAGGATCAAGAAAGAGGAGGAGGAGAAGGCCAAGAAGAGGAAGCAGAAGGAAGCGGCCGAGCGCAAGAAG GGCGGCAAGAAGGGCGGCAAGAAGAAGGACGACCAGGACAAGGCCAAGGGAAATGCCGCGGGAACAAAAGACGAG GAAGAGGCTGACAATGACGGCGAAGAGGAAGAGGATAGTGAAGATGGAGAGAAAGGGGAGGAAGGGGAAGATGGC GAGGACGGCGAGAATGATGACGATGGCGAGAAGGAGGACGACAATAATGAGGAGGAAGATGGCGAGGACGACAAG GGTGACGAGGATGACGAGAAGAAGGCCGAGGGCACCAACAGCAAAGACAACAACGGCAAGGACGACGAGGCCAAG AAGGATAGCAAGAAGAAAGACTCCAAGGCCAAGGACGCCAAGAAGCAAAACAACAGCCAAGACGACGCAGACAAA GACGACGAAGCCGACGCCGACTCCAAGACCAAGGCTAAGAAGAAACGGTAG |
| Transcript | >Ophun1|2026 ATGCGTGCTCCTTTCCAATCACAGCTCGTCGTGTCTTCGCGAGCACGTTCCCAGCTCCGTTTCGCCAGCAGCGAC TCCAAGACGCCTCCTCCGCGGAACAGCGGCGAGCAGCTGCAGAAACCGGTGGCCGAGAAGCTCGAAGTACGACCC GACAAGGTCTCGGATCGGAGCTCCGTACGGACCATCTTTGAAAAGTCTCCGCCGTCTGCCCCCAAGAAGGACGCA GATCTGGGCCGCGAACTGAAGCATGACATCGCAGTCTTTCGCGACACCTTTCGCCTCTCTGACGTGCCGCAAGAG TCGCGCATCCTCGGTCTCGCCGGCACGCTTCCTTATGTCGCGACCTCGCTCTCGACTCTCTTCTTGGCCTGGGAT CTGAACAGGGATATACCGACGGGCAACTCGATCTTTGACCCCATCTTTATCGACCACGAGACGGCCCAGTATCTC CTCAATCTCATTGAGCCGCTACAGCTTGGATACGGAGCCGTCATCATCTCCTTTCTCGGTGCAATCCACTGGGGA CTCGAGTATGCTGAGAAGCAGCCTTCGCGCTCGCGGACGCGATTCCGCTACGGCATCGGCGTCGCCGCCTCCGTC GTAGCCTGGCCAACCGTCCTCATGCCCATCGAGCACGCTCTGACGGCCCAATTCTTTGCTTTCGTCGCCCTTTAC TTTGCCGACTCGAGGGCGTCGTCGCGAGGATGGGCTCCCTATTGGTACAACACGTACCGCTTCCTCCTCACGGCC ATCGTCGGTCTCGCCATCCTCGTGTCTCTGGTGGGCAGGGCCAATATCGGCGTCCAGGGAAGGCTCAGCTCTTCG GGCCTTACCTCGAGCATGACCACCCCGGGCATCGCCGACCGCGAGACTGACTGGGTTAAGCTGGAGGAAGAGGAG AAAGCCAGGATCAAGAAAGAGGAGGAGGAGAAGGCCAAGAAGAGGAAGCAGAAGGAAGCGGCCGAGCGCAAGAAG GGCGGCAAGAAGGGCGGCAAGAAGAAGGACGACCAGGACAAGGCCAAGGGAAATGCCGCGGGAACAAAAGACGAG GAAGAGGCTGACAATGACGGCGAAGAGGAAGAGGATAGTGAAGATGGAGAGAAAGGGGAGGAAGGGGAAGATGGC GAGGACGGCGAGAATGATGACGATGGCGAGAAGGAGGACGACAATAATGAGGAGGAAGATGGCGAGGACGACAAG GGTGACGAGGATGACGAGAAGAAGGCCGAGGGCACCAACAGCAAAGACAACAACGGCAAGGACGACGAGGCCAAG AAGGATAGCAAGAAGAAAGACTCCAAGGCCAAGGACGCCAAGAAGCAAAACAACAGCCAAGACGACGCAGACAAA GACGACGAAGCCGACGCCGACTCCAAGACCAAGGCTAAGAAGAAACGGTAG |
| Gene | >Ophun1|2026 ATGCGTGCTCCTTTCCAATCACAGCTCGTCGTGTCTTCGCGAGCACGTTCCCAGCTCCGTTTCGCCAGCAGCGAC TCCAAGACGCCTCCTCCGCGGAACAGCGGCGAGCAGCTGCAGAAACCGGTGGCCGAGAAGCTCGAAGTACGACCC GACAAGGTCTCGGATCGGAGCTCCGTACGGACCATCTTTGAAAAGTCTCCGCCGTCTGCCCCCAAGAAGGACGCA GATCTGGGCCGCGAACTGAAGCATGACATCGTGAGAGCGAGCAATAGCTAGTCGTCAGCCTGGACAACTGACCAA CCGGTGGGCAGGCAGTCTTTCGCGACACCTTTCGCCTCTCTGACGTGCCGCAAGAGTCGCGCATCCTCGGTCTCG CCGGCACGCTTCCTTATGTCGCGACCTCGCTCTCGACTCTCTTCTTGGCCTGGGATCTGAACAGGGATATACCGA CGGGCAACTCGATCTTTGACCCCATCTTTATCGACCACGAGACGGCCCAGTATCTCCTCAATCTCATTGAGCCGC TACAGCTTGGATACGGAGCCGTCATCATCTCCTTTCTCGGTGCAATCCACTGGGTAAGTGCCCCGTCCGGGAGAT GTAATAGAAGCACGTGCTGACGCTGGACGTCTCTAGGGACTCGAGTATGCTGAGAAGCAGCCTTCGCGCTCGCGG ACGCGATTCCGCTACGGCATCGGCGTCGCCGCCTCCGTCGTAGCCTGGCCAACCGTCCTCATGCCCATCGAGCAC GCTCTGACGGCCCAATTCTTTGCTTTCGTCGCCCTTTACTTTGCCGACTCGAGGGCGTCGTCGCGAGGATGGGCT CCCTATTGGTACAACACGTACCGCTTCCTCCTCACGGCCATCGTCGGTCTCGCCATCCTCGTGTCTCTGGTGGGC AGGGCCAATATCGGCGTCCAGGGAAGGCTCAGCTCTTCGGGCCTTACCTCGAGCATGACCACCCCGGGCATCGCC GACCGCGAGACTGACTGGGTTAAGCTGGAGGAAGAGGAGAAAGCCAGGATCAAGAAAGAGGAGGAGGAGAAGGCC AAGAAGAGGAAGCAGAAGGAAGCGGCCGAGCGCAAGAAGGGCGGCAAGAAGGGCGGCAAGAAGAAGGACGACCAG GACAAGGCCAAGGGAAATGCCGCGGGAACAAAAGACGAGGAAGAGGCTGACAATGACGGCGAAGAGGAAGAGGAT AGTGAAGATGGAGAGAAAGGGGAGGAAGGGGAAGATGGCGAGGACGGCGAGAATGATGACGATGGCGAGAAGGAG GACGACAATAATGAGGAGGAAGATGGCGAGGACGACAAGGGTGACGAGGATGACGAGAAGAAGGCCGAGGGCACC AACAGCAAAGACAACAACGGCAAGGACGACGAGGCCAAGAAGGATAGCAAGAAGAAAGACTCCAAGGCCAAGGAC GCCAAGAAGCAAAACAACAGCCAAGACGACGCAGACAAAGACGACGAAGCCGACGCCGACTCCAAGACCAAGGCT AAGAAGAAACGGTAG |