© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|1945 |
| Gene name | |
| Location | Contig_189:45..2029 |
| Strand | - |
| Gene length (bp) | 1984 |
| Transcript length (bp) | 1764 |
| Coding sequence length (bp) | 1764 |
| Protein length (aa) | 588 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04820 | Trp_halogenase | Tryptophan halogenase | 6.8E-11 | 9 | 64 |
| PF04820 | Trp_halogenase | Tryptophan halogenase | 8.5E-13 | 183 | 375 |
| PF01494 | FAD_binding_3 | FAD binding domain | 2.0E-07 | 8 | 378 |
| PF01134 | GIDA | Glucose inhibited division protein A | 1.4E-04 | 8 | 35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0VZ69|THAL_CHOCO | Tryptophan 2-halogenase OS=Chondromyces crocatus GN=cmdE PE=4 SV=1 | 1 | 476 | 4.0E-63 |
| sp|P95482|PRNC_PSEFL | Monodechloroaminopyrrolnitrin halogenase PrnC OS=Pseudomonas fluorescens GN=prnC PE=4 SV=1 | 9 | 368 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004497 | monooxygenase activity | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| Orthofinder run ID | 4 |
| Orthogroup | 339 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1945 MAVPQSSTVVVIGAGPAGAYAACCLAREGIDTVLLEADKFPRYHIGESTLPSLRHFFKFVDVDHVFDSYGFFKKE SGDGTAGFENGGLTLALQNGAVFRLNQLHPDACTDFIEALGPDGYAWNLIRSESDDLLFRHARTCGAHAFDETKV DTIQFEAGANRDEAGGPGRPVSATWSRKDGSTGSITFDYLIDASGRNGILSTKYLKSRTFNRGLKNVASWGYWKS DALYGKGTSWEGLPYFEALKDASGWCWYMPLHDGTRSVGVVQDQAMAADKKRSMGRPSASEYYAQSLDLATRTKE LLEGAELTSGIKSASDWSYTSSTYHIPHARICGDAGCFIDPLFSSGVHLAIVGGLSAAVTIAASIRGDMDEQTAG SWHSKKTVESYARFMLAVSAATKQIRYDDEPVMEDFNNDGLQGAFDLLKPIIQGTVDAEARGKTTDGEISQVLDF CHRAFNYVPQEKKDALFEKLRKLDPRSGTGDAITNMEELKSQLNEEEMQIVETLRSRRLVREDVFTLNSFTLDTI DGMAPRLIRGELGLVKSGSSKIDSRHMFSPPFLDGRVEAIRTKVEAEGFGEADRMVMSRLVV* |
| Coding | >Ophun1|1945 ATGGCAGTTCCCCAAAGCTCCACCGTCGTCGTCATAGGCGCCGGCCCTGCAGGAGCCTATGCGGCTTGCTGCTTG GCACGCGAGGGCATCGATACCGTCCTGCTTGAGGCAGACAAGTTCCCCCGATACCACATTGGCGAGAGCACGCTT CCCTCGCTGCGGCACTTCTTCAAGTTTGTCGACGTAGACCATGTCTTTGACTCGTATGGCTTCTTCAAGAAGGAA AGTGGCGACGGCACTGCGGGATTTGAGAACGGTGGATTAACTCTCGCCCTGCAGAACGGAGCAGTCTTTAGACTC AATCAGCTCCATCCCGATGCCTGTACCGACTTCATCGAGGCTCTGGGTCCAGACGGCTATGCTTGGAATCTGATC CGATCCGAATCGGACGACTTGCTGTTCAGGCACGCGAGAACTTGCGGGGCTCACGCCTTTGACGAGACAAAGGTC GATACCATTCAATTCGAGGCCGGCGCGAACCGGGACGAAGCCGGAGGACCAGGACGGCCCGTTTCTGCAACCTGG AGCCGTAAAGACGGGTCGACCGGGAGCATCACCTTTGACTATCTCATCGATGCCAGTGGACGGAACGGAATCCTT AGTACCAAGTATCTGAAGAGTAGGACCTTTAACCGCGGCCTCAAGAATGTCGCCAGCTGGGGATATTGGAAGAGC GACGCTCTGTACGGCAAGGGAACGTCCTGGGAGGGGCTACCGTACTTTGAGGCGCTGAAAGATGCGAGCGGTTGG TGTTGGTATATGCCACTTCATGACGGGACTCGCTCTGTCGGCGTTGTCCAGGACCAAGCCATGGCTGCCGACAAG AAGCGAAGTATGGGCAGGCCATCGGCCTCGGAGTACTACGCTCAATCGCTCGACCTAGCCACTCGCACGAAAGAG CTGCTTGAAGGAGCGGAACTTACTAGCGGTATCAAGTCAGCGTCAGACTGGTCCTACACGTCTTCCACCTACCAT ATCCCCCATGCCCGTATCTGCGGAGACGCCGGATGCTTCATCGACCCTCTCTTCTCGTCTGGCGTTCACCTGGCT ATAGTCGGCGGTCTATCGGCGGCAGTCACTATAGCTGCCTCCATTAGGGGCGACATGGACGAACAGACTGCCGGC TCGTGGCATTCCAAGAAGACGGTTGAGAGCTATGCCCGCTTCATGTTAGCCGTCAGCGCCGCCACGAAGCAGATT CGCTACGACGACGAGCCCGTCATGGAGGATTTCAACAACGACGGCTTGCAAGGGGCCTTTGATCTTCTCAAGCCC ATCATCCAGGGAACAGTCGACGCCGAAGCCAGGGGGAAGACAACGGATGGCGAGATCTCGCAGGTCCTCGACTTC TGTCACCGAGCCTTCAACTACGTGCCGCAGGAGAAGAAGGACGCGCTCTTCGAGAAGCTCCGCAAGCTCGACCCC AGATCCGGCACAGGCGACGCCATCACCAACATGGAAGAGCTCAAGTCGCAGCTAAACGAAGAAGAGATGCAAATC GTAGAGACGCTGCGTAGTCGACGCCTTGTCCGAGAAGACGTCTTCACCCTCAACAGCTTCACGCTCGACACCATC GACGGGATGGCGCCTAGGCTCATCCGCGGCGAGCTCGGCCTCGTCAAGAGCGGAAGTTCCAAGATCGATAGCCGG CATATGTTCTCGCCGCCTTTCCTGGACGGGAGAGTCGAGGCGATTCGGACAAAGGTCGAGGCTGAGGGGTTCGGA GAGGCCGACAGAATGGTGATGAGCCGTCTTGTAGTTTAG |
| Transcript | >Ophun1|1945 ATGGCAGTTCCCCAAAGCTCCACCGTCGTCGTCATAGGCGCCGGCCCTGCAGGAGCCTATGCGGCTTGCTGCTTG GCACGCGAGGGCATCGATACCGTCCTGCTTGAGGCAGACAAGTTCCCCCGATACCACATTGGCGAGAGCACGCTT CCCTCGCTGCGGCACTTCTTCAAGTTTGTCGACGTAGACCATGTCTTTGACTCGTATGGCTTCTTCAAGAAGGAA AGTGGCGACGGCACTGCGGGATTTGAGAACGGTGGATTAACTCTCGCCCTGCAGAACGGAGCAGTCTTTAGACTC AATCAGCTCCATCCCGATGCCTGTACCGACTTCATCGAGGCTCTGGGTCCAGACGGCTATGCTTGGAATCTGATC CGATCCGAATCGGACGACTTGCTGTTCAGGCACGCGAGAACTTGCGGGGCTCACGCCTTTGACGAGACAAAGGTC GATACCATTCAATTCGAGGCCGGCGCGAACCGGGACGAAGCCGGAGGACCAGGACGGCCCGTTTCTGCAACCTGG AGCCGTAAAGACGGGTCGACCGGGAGCATCACCTTTGACTATCTCATCGATGCCAGTGGACGGAACGGAATCCTT AGTACCAAGTATCTGAAGAGTAGGACCTTTAACCGCGGCCTCAAGAATGTCGCCAGCTGGGGATATTGGAAGAGC GACGCTCTGTACGGCAAGGGAACGTCCTGGGAGGGGCTACCGTACTTTGAGGCGCTGAAAGATGCGAGCGGTTGG TGTTGGTATATGCCACTTCATGACGGGACTCGCTCTGTCGGCGTTGTCCAGGACCAAGCCATGGCTGCCGACAAG AAGCGAAGTATGGGCAGGCCATCGGCCTCGGAGTACTACGCTCAATCGCTCGACCTAGCCACTCGCACGAAAGAG CTGCTTGAAGGAGCGGAACTTACTAGCGGTATCAAGTCAGCGTCAGACTGGTCCTACACGTCTTCCACCTACCAT ATCCCCCATGCCCGTATCTGCGGAGACGCCGGATGCTTCATCGACCCTCTCTTCTCGTCTGGCGTTCACCTGGCT ATAGTCGGCGGTCTATCGGCGGCAGTCACTATAGCTGCCTCCATTAGGGGCGACATGGACGAACAGACTGCCGGC TCGTGGCATTCCAAGAAGACGGTTGAGAGCTATGCCCGCTTCATGTTAGCCGTCAGCGCCGCCACGAAGCAGATT CGCTACGACGACGAGCCCGTCATGGAGGATTTCAACAACGACGGCTTGCAAGGGGCCTTTGATCTTCTCAAGCCC ATCATCCAGGGAACAGTCGACGCCGAAGCCAGGGGGAAGACAACGGATGGCGAGATCTCGCAGGTCCTCGACTTC TGTCACCGAGCCTTCAACTACGTGCCGCAGGAGAAGAAGGACGCGCTCTTCGAGAAGCTCCGCAAGCTCGACCCC AGATCCGGCACAGGCGACGCCATCACCAACATGGAAGAGCTCAAGTCGCAGCTAAACGAAGAAGAGATGCAAATC GTAGAGACGCTGCGTAGTCGACGCCTTGTCCGAGAAGACGTCTTCACCCTCAACAGCTTCACGCTCGACACCATC GACGGGATGGCGCCTAGGCTCATCCGCGGCGAGCTCGGCCTCGTCAAGAGCGGAAGTTCCAAGATCGATAGCCGG CATATGTTCTCGCCGCCTTTCCTGGACGGGAGAGTCGAGGCGATTCGGACAAAGGTCGAGGCTGAGGGGTTCGGA GAGGCCGACAGAATGGTGATGAGCCGTCTTGTAGTTTAG |
| Gene | >Ophun1|1945 ATGGCAGTTCCCCAAAGCTCCACCGTCGTCGTCATAGGCGCCGGCCCTGCAGGAGCCTATGCGGCTTGCTGCTTG GCACGCGAGGGCATCGATACCGTCCTGCTTGAGGCAGACAAGTTCCCCCGGTCAGTTCGGTCCGTGTAAGCCGTA GCCCCCCTTTCCCTGACAACTGGCAGATACCACATTGGCGAGAGCACGCTTCCCTCGCTGCGGCACTTCTTCAAG TTTGTCGACGTAGACCATGTCTTTGACTCGTATGGCTTCTTCAAGAAGGAAAGTGGCGACGGCACTGCGGGATTT GAGAACGGTGGATTAACTCTCGCCCTGCAGAACGGAGCAGTCTTTAGACTCAATCAGCTCCATCCCGATGCCTGT CCGTTTGGCCTTCACAACCCGCTGCTGAGAATGGGGCTGACGCGACAAGTCCAGGTACCGACTTCATCGAGGCTC TGGGTCCAGACGGCTATGCTTGGAATCTGATCCGATCCGAATCGGACGACTTGCTGTTCAGGCACGCGAGAACTT GCGGGGCTCACGCCTTTGACGAGACAAAGGTCGATACCATTCAATTCGAGGCCGGCGCGAACCGGGACGAAGCCG GAGGACCAGGACGGCCCGTTTCTGCAACCTGGAGCCGTAAAGACGGGTCGACCGGGAGCATCACCTTTGACTATC TCATCGATGCCAGTGGACGGAACGGAATCCTTAGTACCAAGTATCTGAAGAGTAGGACCTTTAACCGCGGCCTCA AGAATGTCGCCAGCTGGGGATATTGGAAGAGCGACGCTCTGTACGGCAAGGGAACGTCCTGGGAGGGGCTACCGT ACTTTGAGGCGCTGAAAGGTGAGTTGAACCGTGTCTTGTCCGTGCTCATCGGTGGCTGAAAGAGCCGTGGTAGAT GCGAGCGGTTGGTGTTGGTATATGCCACTTCATGACGGGACTCGCTCTGTCGGCGTTGTCCAGGACCAAGCCATG GCTGCCGACAAGAAGCGAAGTATGGGCAGGCCATCGGCCTCGGAGTACTACGCTCAATCGCTCGACCTAGCCACT CGCACGAAAGAGCTGCTTGAAGGAGCGGAACTTACTAGCGGTATCAAGTCAGCGTCAGACTGGTCCTACACGTCT TCCACCTACCATATCCCCCATGCCCGTATCTGCGGAGACGCCGGATGCTTCATCGACCCTCTCTTCTCGTCTGGC GTTCACCTGGCTATAGTCGGCGGTCTATCGGCGGCAGTCACTATAGCTGCCTCCATTAGGGGCGACATGGACGAA CAGACTGCCGGCTCGTGGCATTCCAAGAAGACGGTTGAGAGCTATGCCCGCTTCATGTTAGCCGTCAGCGCCGCC ACGAAGCAGATTCGCTACGACGACGAGCCCGTCATGGAGGATTTCAACAACGACGGCTTGCAAGGGGCCTTTGAT CTTCTCAAGCCCAGTGAGCATCTCCATCGTCTGCATACTTGAACAGGTTCAGCTGACGCCAGCCTCCCCAGTCAT CCAGGGAACAGTCGACGCCGAAGCCAGGGGGAAGACAACGGATGGCGAGATCTCGCAGGTCCTCGACTTCTGTCA CCGAGCCTTCAACTACGTGCCGCAGGAGAAGAAGGACGCGCTCTTCGAGAAGCTCCGCAAGCTCGACCCCAGATC CGGCACAGGCGACGCCATCACCAACATGGAAGAGCTCAAGTCGCAGCTAAACGAAGAAGAGATGCAAATCGTAGA GACGCTGCGTAGTCGACGCCTTGTCCGAGAAGACGTCTTCACCCTCAACAGCTTCACGCTCGACACCATCGACGG GATGGCGCCTAGGCTCATCCGCGGCGAGCTCGGCCTCGTCAAGAGCGGAAGTTCCAAGATCGATAGCCGGCATAT GTTCTCGCCGCCTTTCCTGGACGGGAGAGTCGAGGCGATTCGGACAAAGGTCGAGGCTGAGGGGTTCGGAGAGGC CGACAGAATGGTGATGAGCCGTCTTGTAGTTTAG |